Wall clock time and date at job start Mon Mar 30 2020 04:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53010 * 109.46776 * 2 1 4 4 H 1.08997 * 109.46598 * 54.52270 * 3 2 1 5 5 C 1.50695 * 109.47186 * 294.51666 * 3 2 1 6 6 H 1.07991 * 120.00247 * 273.16699 * 5 3 2 7 7 C 1.37885 * 119.99751 * 92.89125 * 5 3 2 8 8 N 1.31514 * 119.99943 * 3.99059 * 7 5 3 9 9 Si 1.86795 * 119.99981 * 183.97975 * 7 5 3 10 10 H 1.48508 * 109.46917 * 90.00480 * 9 7 5 11 11 H 1.48505 * 109.47305 * 210.00173 * 9 7 5 12 12 H 1.48501 * 109.47501 * 330.00855 * 9 7 5 13 13 N 1.46901 * 109.46618 * 174.51726 * 3 2 1 14 14 C 1.46685 * 111.00064 * 58.33937 * 13 3 2 15 15 C 1.52721 * 108.58039 * 168.86408 * 14 13 3 16 16 C 1.51654 * 110.59343 * 59.15919 * 15 14 13 17 17 C 1.49857 * 114.92883 * 315.48979 * 16 15 14 18 18 H 1.08997 * 107.90536 * 155.64913 * 17 16 15 19 19 C 1.50808 * 113.19130 * 274.65221 * 17 16 15 20 20 O 1.21281 * 125.40075 * 326.87159 * 19 17 16 21 21 N 1.34873 * 109.20316 * 146.87895 * 19 17 16 22 22 C 1.46975 * 111.13087 * 359.31227 * 21 19 17 23 23 C 1.46670 * 111.00222 * 293.80031 * 13 3 2 24 24 H 1.09004 * 111.95188 * 54.43074 * 23 13 3 25 25 H 1.09001 * 109.47214 * 304.70480 * 1 2 3 26 26 H 1.09005 * 109.47415 * 64.70338 * 1 2 3 27 27 H 1.09004 * 109.47001 * 184.70940 * 1 2 3 28 28 H 1.08997 * 109.46828 * 240.00433 * 2 1 3 29 29 H 1.09000 * 109.47218 * 120.00090 * 2 1 3 30 30 H 0.96998 * 119.99986 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.62307 * 288.59203 * 14 13 3 32 32 H 1.09005 * 109.62085 * 48.95127 * 14 13 3 33 33 H 1.09006 * 109.24960 * 179.44347 * 15 14 13 34 34 H 1.09000 * 109.25118 * 298.86418 * 15 14 13 35 35 H 1.09001 * 108.39175 * 76.90269 * 16 15 14 36 36 H 1.09004 * 108.39068 * 194.08086 * 16 15 14 37 37 H 0.96991 * 124.43109 * 179.33344 * 21 19 17 38 38 H 1.09002 * 110.34982 * 100.67702 * 22 21 19 39 39 H 1.08999 * 110.34881 * 222.84664 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5987 1.9839 0.8369 5 6 1.6515 2.1127 -1.2927 6 1 2.2904 2.0262 -2.1590 7 6 0.4775 2.8317 -1.3709 8 7 -0.2640 2.9987 -0.2976 9 14 -0.0595 3.5687 -3.0011 10 1 -0.9014 2.5891 -3.7338 11 1 -0.8428 4.8054 -2.7512 12 1 1.1387 3.8975 -3.8144 13 7 3.5030 1.4447 0.1323 14 6 4.1305 0.6899 -0.9577 15 6 5.6342 0.9554 -0.9307 16 6 6.2263 0.5352 0.4007 17 6 5.4354 0.9520 1.6034 18 1 5.6771 0.2680 2.4169 19 6 5.7569 2.3494 2.0705 20 8 6.8441 2.8819 1.9974 21 7 4.6438 2.9131 2.5826 22 6 3.4991 1.9949 2.5006 23 6 3.9129 0.9330 1.4444 24 1 3.4912 -0.0514 1.6477 25 1 -0.3634 0.5851 0.8448 26 1 -0.3634 0.4391 -0.9291 27 1 -0.3633 -1.0242 0.0844 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 -1.0900 3.5041 -0.3527 31 1 3.9444 -0.3752 -0.8199 32 1 3.7161 1.0131 -1.9127 33 1 6.1131 0.3913 -1.7311 34 1 5.8141 2.0194 -1.0844 35 1 6.3179 -0.5510 0.4089 36 1 7.2263 0.9612 0.4822 37 1 4.6039 3.8074 2.9558 38 1 3.3236 1.5206 3.4662 39 1 2.6071 2.5294 2.1739 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300075173.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:04 Heat of formation + Delta-G solvation = -52.234564 kcal Electronic energy + Delta-G solvation = -20196.884461 eV Core-core repulsion = 17331.172002 eV Total energy + Delta-G solvation = -2865.712459 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.89133 -39.14163 -36.76537 -36.05837 -33.85331 -32.22756 -31.51308 -28.49658 -27.42948 -25.93177 -24.24465 -23.00322 -22.62410 -20.67109 -19.41611 -18.47247 -17.95974 -17.45980 -16.62485 -16.14637 -15.78390 -15.77170 -15.26105 -14.84888 -14.62759 -14.33407 -14.03426 -13.88648 -13.47362 -13.27857 -13.10447 -12.82647 -12.66776 -12.49328 -12.26718 -12.12410 -11.86546 -11.69956 -11.59219 -11.26734 -10.87473 -10.74012 -10.66764 -10.36474 -9.93100 -8.67035 -8.03561 -6.06286 1.41033 1.45512 1.51924 1.66091 2.47386 2.59138 3.15728 3.41178 3.51935 3.57366 3.88646 4.20276 4.31231 4.35500 4.55707 4.59141 4.63352 4.70285 4.79393 4.84707 4.92704 4.96739 4.98133 5.09151 5.16977 5.25934 5.35853 5.43314 5.46520 5.58350 5.77984 5.83493 5.90463 5.94437 6.11866 6.26576 6.70684 6.90097 7.05412 7.36082 7.57999 9.03441 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.024724 B = 0.007512 C = 0.007469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.214167 B = 3726.585393 C = 3747.875745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.132 4.132 3 C 0.207 3.793 4 H 0.051 0.949 5 C -0.504 4.504 6 H 0.046 0.954 7 C 0.031 3.969 8 N -0.907 5.907 9 Si 0.933 3.067 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.537 5.537 14 C 0.064 3.936 15 C -0.109 4.109 16 C -0.095 4.095 17 C -0.108 4.108 18 H 0.124 0.876 19 C 0.526 3.474 20 O -0.586 6.586 21 N -0.718 5.718 22 C 0.108 3.892 23 C 0.071 3.929 24 H 0.089 0.911 25 H 0.038 0.962 26 H 0.032 0.968 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.048 0.952 30 H 0.258 0.742 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.036 0.964 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.410 0.590 38 H 0.099 0.901 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.035 -7.573 4.891 10.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.172 4.172 3 C 0.101 3.899 4 H 0.069 0.931 5 C -0.542 4.542 6 H 0.064 0.936 7 C -0.169 4.169 8 N -0.547 5.547 9 Si 0.761 3.239 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.261 5.261 14 C -0.064 4.064 15 C -0.147 4.147 16 C -0.133 4.133 17 C -0.130 4.130 18 H 0.142 0.858 19 C 0.314 3.686 20 O -0.467 6.467 21 N -0.370 5.370 22 C -0.016 4.016 23 C -0.038 4.038 24 H 0.106 0.894 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.248 0.752 38 H 0.117 0.883 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.582 -6.833 4.848 10.654 hybrid contribution -1.033 0.532 -0.817 1.420 sum 5.549 -6.301 4.032 9.314 Atomic orbital electron populations 1.21300 0.96260 0.97990 1.01183 1.22102 0.96431 0.99936 0.98709 1.19412 0.81963 0.91459 0.97095 0.93122 1.21247 1.04634 1.31389 0.96971 0.93618 1.25344 0.97236 0.96190 0.98108 1.69993 1.14417 1.41894 1.28385 0.85958 0.78024 0.77968 0.81981 1.20417 1.21571 1.20399 1.62370 1.10243 1.53090 1.00434 1.21823 0.93832 0.95311 0.95464 1.21197 0.95215 1.00591 0.97672 1.20306 0.98479 1.02216 0.92276 1.20930 0.96015 0.94800 1.01235 0.85781 1.21117 0.83009 0.89153 0.75310 1.90645 1.26343 1.70381 1.59376 1.46250 1.10573 1.18418 1.61793 1.22553 0.88697 0.91267 0.99105 1.22623 0.93041 0.97147 0.91029 0.89393 0.94261 0.94878 0.94227 0.94164 0.93337 0.93327 0.94556 0.92186 0.89863 0.94541 0.89214 0.91890 0.75213 0.88313 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.46 8.72 71.98 0.63 -3.83 16 2 C -0.13 -5.10 4.68 30.60 0.14 -4.96 16 3 C 0.21 9.01 1.77 44.17 0.08 9.09 16 4 H 0.05 2.47 5.28 -2.39 -0.01 2.46 16 5 C -0.50 -25.45 7.59 25.60 0.19 -25.26 16 6 H 0.05 2.38 6.04 -2.91 -0.02 2.36 16 7 C 0.03 1.61 4.32 84.66 0.37 1.97 16 8 N -0.91 -48.18 11.63 21.45 0.25 -47.93 16 9 Si 0.93 42.50 29.54 68.60 2.03 44.53 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 N -0.54 -20.26 4.25 -847.00 -3.60 -23.87 16 14 C 0.06 2.21 4.56 86.25 0.39 2.60 16 15 C -0.11 -3.30 6.12 30.06 0.18 -3.12 16 16 C -0.09 -2.52 5.38 29.14 0.16 -2.37 16 17 C -0.11 -2.98 2.60 -12.48 -0.03 -3.02 16 18 H 0.12 2.64 8.13 -2.39 -0.02 2.62 16 19 C 0.53 17.73 8.07 87.68 0.71 18.43 16 20 O -0.59 -23.81 17.37 -3.03 -0.05 -23.86 16 21 N -0.72 -21.67 6.28 -457.73 -2.87 -24.54 16 22 C 0.11 3.10 7.20 87.11 0.63 3.72 16 23 C 0.07 2.10 2.75 45.81 0.13 2.23 16 24 H 0.09 2.33 6.33 -2.39 -0.02 2.32 16 25 H 0.04 1.69 7.95 -2.39 -0.02 1.67 16 26 H 0.03 1.52 6.64 -2.38 -0.02 1.50 16 27 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.04 1.55 6.96 -2.39 -0.02 1.54 16 29 H 0.05 1.61 6.28 -2.39 -0.01 1.60 16 30 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 31 H 0.04 1.16 7.06 -2.39 -0.02 1.14 16 32 H 0.06 2.39 5.91 -2.38 -0.01 2.38 16 33 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.06 1.79 7.48 -2.38 -0.02 1.78 16 37 H 0.41 11.33 8.96 -92.72 -0.83 10.50 16 38 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.07 2.58 6.01 -2.39 -0.01 2.56 16 Total: -1.00 -60.31 292.19 -0.45 -60.76 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.23 Total: 19.40 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 3.57 Total: -4.49 kcal Atomic # 7 Polarization: -90.11 SS G_CDS: -6.23 Total: -96.33 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.05 Total: -23.86 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -60.31 -0.45 -60.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300075173.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.528 kcal (2) G-P(sol) polarization free energy of solvation -60.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds