Wall clock time and date at job start Mon Mar 30 2020 03:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00443 * 2 1 4 4 C 1.52996 * 109.47528 * 94.99875 * 3 2 1 5 5 C 1.50703 * 119.99566 * 179.97438 * 2 1 3 6 6 N 1.46897 * 109.47390 * 94.99765 * 5 2 1 7 7 C 1.46905 * 110.99826 * 169.99874 * 6 5 2 8 8 C 1.53243 * 109.33672 * 187.25448 * 7 6 5 9 9 N 1.47076 * 108.52280 * 306.17389 * 8 7 6 10 10 C 1.34777 * 120.88062 * 231.18540 * 9 8 7 11 11 O 1.21687 * 120.00006 * 5.22924 * 10 9 8 12 12 C 1.46376 * 120.00313 * 185.22734 * 10 9 8 13 13 H 1.07997 * 119.99552 * 354.99977 * 12 10 9 14 14 C 1.40044 * 120.00321 * 175.00114 * 12 10 9 15 15 N 1.30673 * 119.99689 * 359.97438 * 14 12 10 16 16 Si 1.86795 * 120.00192 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47234 * 269.99511 * 16 14 12 18 18 H 1.48504 * 109.46981 * 29.99629 * 16 14 12 19 19 H 1.48500 * 109.47228 * 149.99275 * 16 14 12 20 20 C 1.47077 * 118.23996 * 51.45605 * 9 8 7 21 21 C 1.46898 * 111.00153 * 294.30172 * 6 5 2 22 22 H 1.08008 * 119.99590 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.00641 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.46868 * 215.00100 * 3 2 1 25 25 H 1.09000 * 109.46742 * 334.99459 * 3 2 1 26 26 H 1.09003 * 109.46945 * 59.99931 * 4 3 2 27 27 H 1.08997 * 109.47262 * 179.97438 * 4 3 2 28 28 H 1.09005 * 109.46848 * 300.00312 * 4 3 2 29 29 H 1.09003 * 109.46865 * 334.99787 * 5 2 1 30 30 H 1.09003 * 109.47067 * 215.00363 * 5 2 1 31 31 H 1.08994 * 109.49159 * 67.30254 * 7 6 5 32 32 H 1.08996 * 109.49043 * 307.21370 * 7 6 5 33 33 H 1.08999 * 109.62657 * 186.46027 * 8 7 6 34 34 H 1.09008 * 109.62520 * 65.87988 * 8 7 6 35 35 H 0.97000 * 120.00181 * 180.02562 * 15 14 12 36 36 H 1.09007 * 109.62715 * 68.25082 * 20 9 8 37 37 H 1.09000 * 109.63081 * 188.83321 * 20 9 8 38 38 H 1.09001 * 109.49368 * 292.70476 * 21 6 5 39 39 H 1.09004 * 109.49188 * 52.78672 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.4275 1.6839 1.4369 5 6 2.0634 -1.3052 0.0006 6 7 2.4127 -1.6696 -1.3789 7 6 3.3460 -2.8038 -1.4035 8 6 3.8250 -3.0358 -2.8406 9 7 2.6463 -3.1812 -3.7082 10 6 2.5289 -4.2310 -4.5453 11 8 3.3566 -5.1226 -4.5228 12 6 1.4057 -4.2985 -5.4815 13 1 0.6281 -3.5499 -5.4468 14 6 1.3394 -5.3339 -6.4222 15 7 2.2806 -6.2394 -6.4645 16 14 -0.0936 -5.4196 -7.6174 17 1 -1.1882 -6.2265 -7.0208 18 1 -0.5867 -4.0473 -7.8982 19 1 0.3549 -6.0531 -8.8834 20 6 1.6020 -2.1477 -3.6424 21 6 1.2077 -1.9538 -2.1696 22 1 -0.5400 0.9354 -0.0004 23 1 -0.5401 -0.9352 -0.0004 24 1 2.9743 1.1986 -0.5895 25 1 1.4387 2.0853 -0.4344 26 1 3.0524 0.9035 1.8713 27 1 2.9729 2.6276 1.4368 28 1 1.5167 1.7902 2.0264 29 1 1.4384 -2.0853 0.4353 30 1 2.9741 -1.1987 0.5900 31 1 2.8408 -3.6985 -1.0397 32 1 4.2022 -2.5842 -0.7657 33 1 4.4261 -3.9440 -2.8841 34 1 4.4194 -2.1836 -3.1704 35 1 2.2349 -6.9563 -7.1162 36 1 1.9869 -1.2119 -4.0478 37 1 0.7326 -2.4685 -4.2163 38 1 0.7323 -2.8604 -1.7950 39 1 0.5132 -1.1177 -2.0873 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572659799.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:53 Heat of formation + Delta-G solvation = -14.359983 kcal Electronic energy + Delta-G solvation = -18974.722507 eV Core-core repulsion = 16110.652413 eV Total energy + Delta-G solvation = -2864.070094 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.02418 -37.19425 -35.52310 -33.05903 -32.44522 -30.87985 -30.06880 -27.74355 -26.09607 -23.98818 -23.43936 -22.94079 -20.68697 -18.77413 -18.34326 -16.62747 -15.77943 -15.38480 -15.06175 -14.88209 -14.31147 -14.16871 -14.04755 -13.78307 -13.65854 -13.15509 -12.53695 -12.48478 -12.22062 -11.84671 -11.51305 -11.44372 -11.14252 -10.99956 -10.93477 -10.87115 -10.72540 -10.71404 -10.33102 -10.20165 -9.95659 -9.14102 -8.85641 -8.12152 -7.57353 -7.15669 -6.19318 -4.64123 2.16770 3.13776 3.20697 3.23890 4.07799 4.23241 4.56193 4.64737 4.74649 4.78935 5.18828 5.31163 5.35619 5.42628 5.51610 5.57133 5.64941 5.71244 5.79043 5.83449 5.86178 5.90865 5.93277 5.99878 6.12306 6.14687 6.29039 6.49318 6.56348 6.57909 6.74371 6.83143 7.28521 7.34659 7.45914 7.64011 8.14704 8.38134 9.02532 9.45947 10.58258 10.76928 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.036001 B = 0.004912 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.562732 B = 5699.516970 C = 6242.045135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.103 4.103 3 C -0.086 4.086 4 C -0.145 4.145 5 C 0.086 3.914 6 N -0.530 5.530 7 C 0.046 3.954 8 C 0.126 3.874 9 N -0.645 5.645 10 C 0.559 3.441 11 O -0.579 6.579 12 C -0.545 4.545 13 H 0.072 0.928 14 C 0.088 3.912 15 N -0.769 5.769 16 Si 0.906 3.094 17 H -0.272 1.272 18 H -0.264 1.264 19 H -0.279 1.279 20 C 0.130 3.870 21 C 0.038 3.962 22 H 0.097 0.903 23 H 0.095 0.905 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.268 0.732 36 H 0.049 0.951 37 H 0.093 0.907 38 H 0.033 0.967 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 12.747 11.865 17.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.103 4.103 3 C -0.124 4.124 4 C -0.202 4.202 5 C -0.041 4.041 6 N -0.255 5.255 7 C -0.083 4.083 8 C 0.001 3.999 9 N -0.383 5.383 10 C 0.365 3.635 11 O -0.462 6.462 12 C -0.581 4.581 13 H 0.090 0.910 14 C -0.132 4.132 15 N -0.397 5.397 16 Si 0.731 3.269 17 H -0.198 1.198 18 H -0.188 1.188 19 H -0.204 1.204 20 C 0.005 3.995 21 C -0.091 4.091 22 H 0.115 0.885 23 H 0.113 0.887 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.051 0.949 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.104 12.445 11.554 17.112 hybrid contribution -1.230 -0.659 -0.131 1.401 sum -3.334 11.786 11.423 16.748 Atomic orbital electron populations 1.23712 0.95312 1.01672 1.02731 1.21621 0.94908 0.95413 0.98377 1.20548 1.00633 0.93996 0.97198 1.21722 1.01221 1.01008 0.96272 1.21122 0.98957 0.93458 0.90559 1.61937 1.14957 1.38270 1.10359 1.22526 0.95579 0.91227 0.98977 1.21200 0.89901 1.01128 0.87650 1.48239 1.20247 1.26043 1.43792 1.18255 0.86658 0.79212 0.79340 1.90583 1.45783 1.38426 1.71440 1.20975 1.07993 1.12139 1.17013 0.90964 1.25728 0.96069 0.94371 0.97031 1.70017 1.30038 1.09762 1.29911 0.86395 0.81587 0.79159 0.79778 1.19756 1.18826 1.20437 1.21564 0.92958 0.91533 0.93462 1.22726 0.91489 0.99486 0.95370 0.88510 0.88700 0.90519 0.91715 0.92722 0.92711 0.92957 0.94700 0.90573 0.94852 0.90928 0.89596 0.93299 0.92110 0.93260 0.88880 0.94910 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.09 12.30 29.02 0.36 -1.73 16 2 C -0.10 -1.16 4.22 -101.07 -0.43 -1.59 16 3 C -0.09 -0.86 6.10 -27.89 -0.17 -1.03 16 4 C -0.14 -1.21 9.89 37.16 0.37 -0.85 16 5 C 0.09 1.10 5.15 -4.98 -0.03 1.07 16 6 N -0.53 -8.17 4.62 -235.46 -1.09 -9.26 16 7 C 0.05 0.76 5.62 -3.70 -0.02 0.74 16 8 C 0.13 2.55 6.61 -3.60 -0.02 2.53 16 9 N -0.64 -15.13 3.00 -173.84 -0.52 -15.65 16 10 C 0.56 16.19 7.63 -12.99 -0.10 16.09 16 11 O -0.58 -18.99 14.49 5.20 0.08 -18.91 16 12 C -0.54 -15.39 8.86 -35.63 -0.32 -15.71 16 13 H 0.07 1.86 5.74 -52.49 -0.30 1.56 16 14 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 15 N -0.77 -23.16 11.84 55.55 0.66 -22.50 16 16 Si 0.91 20.12 29.56 -169.99 -5.02 15.09 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 C 0.13 2.52 6.50 -3.36 -0.02 2.50 16 21 C 0.04 0.62 5.39 -3.46 -0.02 0.61 16 22 H 0.10 0.90 7.99 -52.48 -0.42 0.48 16 23 H 0.09 1.03 7.99 -52.49 -0.42 0.61 16 24 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 25 H 0.06 0.61 7.99 -51.93 -0.41 0.19 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.03 0.45 7.97 -51.93 -0.41 0.04 16 30 H 0.08 0.88 7.97 -51.93 -0.41 0.47 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.02 7.99 -51.93 -0.41 0.60 16 33 H 0.09 1.92 7.04 -51.93 -0.37 1.55 16 34 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 35 H 0.27 7.32 8.29 -40.82 -0.34 6.99 16 36 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 37 H 0.09 1.87 5.46 -51.93 -0.28 1.58 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 1.14 5.99 -51.93 -0.31 0.83 16 LS Contribution 314.15 15.07 4.73 4.73 Total: -1.00 -33.30 314.15 -7.93 -41.24 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.27 Total: 0.26 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -0.49 Total: 4.99 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -0.95 Total: -47.40 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.08 Total: -18.91 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.30 -7.93 -41.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572659799.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.878 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds