Wall clock time and date at job start Mon Mar 30 2020 04:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47270 * 2 1 4 4 N 1.46500 * 109.47217 * 119.99740 * 2 1 3 5 5 C 1.36932 * 120.00104 * 294.94362 * 4 2 1 6 6 H 1.08006 * 120.00151 * 57.22469 * 5 4 2 7 7 C 1.38813 * 120.00131 * 237.22170 * 5 4 2 8 8 N 1.31619 * 119.99617 * 27.83691 * 7 5 4 9 9 Si 1.86803 * 120.00234 * 207.83553 * 7 5 4 10 10 H 1.48499 * 109.46841 * 59.99881 * 9 7 5 11 11 H 1.48503 * 109.47099 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47149 * 300.00086 * 9 7 5 13 13 C 1.46503 * 120.00128 * 114.93854 * 4 2 1 14 14 H 1.09006 * 110.43151 * 351.71146 * 13 4 2 15 15 C 1.54621 * 110.49184 * 229.02307 * 13 4 2 16 16 C 1.54480 * 101.76906 * 266.12144 * 15 13 4 17 17 N 1.46768 * 105.46959 * 334.58316 * 16 15 13 18 18 C 1.46502 * 124.34969 * 196.99671 * 17 16 15 19 19 C 1.53002 * 117.49890 * 188.61841 * 18 17 16 20 20 C 1.52994 * 117.49970 * 119.99572 * 18 17 16 21 21 C 1.34418 * 111.30246 * 17.01397 * 17 16 15 22 22 O 1.21281 * 124.94696 * 179.63167 * 21 17 16 23 23 H 1.09000 * 109.46886 * 63.94298 * 1 2 3 24 24 H 1.08999 * 109.46907 * 303.94446 * 1 2 3 25 25 H 1.09001 * 109.47378 * 183.94346 * 1 2 3 26 26 H 1.08999 * 109.47311 * 239.99904 * 2 1 3 27 27 H 1.08997 * 109.47673 * 60.30593 * 3 2 1 28 28 H 1.09007 * 109.46844 * 180.30781 * 3 2 1 29 29 H 1.09001 * 109.47047 * 300.30456 * 3 2 1 30 30 H 0.97008 * 119.99872 * 180.02562 * 8 7 5 31 31 H 1.09006 * 110.96683 * 24.24156 * 15 13 4 32 32 H 1.09001 * 110.97360 * 147.99756 * 15 13 4 33 33 H 1.08994 * 110.24823 * 215.58133 * 16 15 13 34 34 H 1.08995 * 110.24539 * 93.57563 * 16 15 13 35 35 H 1.09001 * 115.54583 * 334.32773 * 18 17 16 36 36 H 1.09006 * 117.49471 * 359.97438 * 19 18 17 37 37 H 1.08993 * 117.49715 * 145.01562 * 19 18 17 38 38 H 1.09003 * 117.50359 * 214.97710 * 20 18 17 39 39 H 1.09003 * 117.49857 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7751 -0.1654 2.4372 6 1 0.7600 0.0233 2.7542 7 6 2.8331 0.1243 3.2878 8 7 4.0131 0.4282 2.7904 9 14 2.5820 0.0829 5.1385 10 1 2.1536 -1.2783 5.5495 11 1 3.8562 0.4279 5.8187 12 1 1.5365 1.0667 5.5183 13 6 2.7669 -1.9430 1.0647 14 1 2.7445 -2.2931 0.0326 15 6 2.1940 -3.0185 2.0166 16 6 3.0956 -2.8513 3.2598 17 7 4.3513 -2.2801 2.7589 18 6 5.6135 -2.2788 3.5026 19 6 6.7739 -1.4671 2.9233 20 6 6.8074 -2.9958 2.8691 21 6 4.1944 -1.7580 1.5302 22 8 5.0700 -1.2179 0.8879 23 1 -0.3633 0.4514 -0.9232 24 1 -0.3633 0.5738 0.8525 25 1 -0.3634 -1.0252 0.0707 26 1 1.8933 -0.5138 -0.8900 27 1 1.6812 1.9548 0.8927 28 1 3.1301 1.4424 -0.0055 29 1 1.6722 1.9579 -0.8872 30 1 4.7526 0.6303 3.3849 31 1 1.1521 -2.8094 2.2593 32 1 2.3008 -4.0152 1.5885 33 1 3.2805 -3.8197 3.7246 34 1 2.6307 -2.1718 3.9742 35 1 5.5198 -2.3198 4.5878 36 1 6.5983 -0.9344 1.9887 37 1 7.4437 -0.9737 3.6274 38 1 7.4995 -3.5080 3.5375 39 1 6.6537 -3.4688 1.8991 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685984972.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:57 Heat of formation + Delta-G solvation = 32.372619 kcal Electronic energy + Delta-G solvation = -20868.712026 eV Core-core repulsion = 18006.668410 eV Total energy + Delta-G solvation = -2862.043616 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.57970 -36.51735 -35.25692 -34.56816 -32.04213 -30.54138 -28.03573 -26.18880 -26.00095 -23.73270 -21.99157 -21.72322 -20.69703 -19.55178 -18.04252 -16.53536 -15.83788 -15.27586 -14.83015 -14.62755 -13.83287 -13.60870 -13.13586 -12.93795 -12.55072 -12.48609 -12.25618 -11.97397 -11.66015 -11.38684 -11.22372 -11.07917 -10.96524 -10.80453 -10.51664 -10.49379 -10.27458 -9.95786 -9.86334 -9.83323 -9.67136 -9.48480 -8.40508 -8.21535 -7.28596 -6.35463 -5.73275 -3.60035 3.23813 3.33864 3.36328 3.93066 4.09630 4.39345 4.64418 5.16379 5.41830 5.49066 5.51537 5.57351 5.67529 5.81285 5.97405 6.07975 6.11541 6.20983 6.28705 6.34295 6.38524 6.41762 6.57461 6.60267 6.62250 6.78406 6.84452 6.94179 6.97628 7.02221 7.14626 7.38238 7.64111 7.82309 7.89324 8.46476 8.66565 9.15209 9.67104 9.73291 10.45524 11.09089 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.020536 B = 0.011958 C = 0.010118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.139579 B = 2340.964988 C = 2766.656142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.169 3.831 3 C -0.137 4.137 4 N -0.555 5.555 5 C -0.297 4.297 6 H 0.054 0.946 7 C 0.053 3.947 8 N -0.819 5.819 9 Si 0.867 3.133 10 H -0.274 1.274 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.153 3.847 14 H 0.071 0.929 15 C -0.134 4.134 16 C 0.112 3.888 17 N -0.590 5.590 18 C 0.103 3.897 19 C -0.180 4.180 20 C -0.208 4.208 21 C 0.550 3.450 22 O -0.539 6.539 23 H 0.034 0.966 24 H 0.053 0.947 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.022 0.978 30 H 0.259 0.741 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.141 0.859 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.265 -6.222 0.082 6.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.063 3.937 3 C -0.195 4.195 4 N -0.278 5.278 5 C -0.426 4.426 6 H 0.071 0.929 7 C -0.155 4.155 8 N -0.453 5.453 9 Si 0.695 3.305 10 H -0.201 1.201 11 H -0.217 1.217 12 H -0.208 1.208 13 C 0.042 3.958 14 H 0.089 0.911 15 C -0.173 4.173 16 C -0.011 4.011 17 N -0.323 5.323 18 C -0.003 4.003 19 C -0.217 4.217 20 C -0.247 4.247 21 C 0.338 3.662 22 O -0.415 6.415 23 H 0.054 0.946 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.158 0.842 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.571 -5.834 -0.207 5.865 hybrid contribution 0.112 0.062 1.520 1.525 sum -0.460 -5.772 1.313 5.937 Atomic orbital electron populations 1.22157 0.98730 1.00349 0.99754 1.20442 0.91545 0.92718 0.88990 1.21916 1.01574 0.97102 0.98950 1.43494 1.62575 1.19656 1.02031 1.18394 0.90901 1.42427 0.90860 0.92893 1.25585 0.96739 0.95303 0.97835 1.70101 1.01771 1.39345 1.34127 0.87148 0.77255 0.78126 0.87937 1.20058 1.21710 1.20785 1.20995 0.89946 0.88370 0.96511 0.91098 1.22786 1.00685 0.97649 0.96212 1.22063 0.84562 0.96676 0.97822 1.47270 1.07386 1.60076 1.17529 1.21017 0.80590 1.04837 0.93852 1.23611 0.99029 0.93189 1.05861 1.23323 1.02484 0.96369 1.02540 1.21332 0.90570 0.74385 0.79873 1.90360 1.47896 1.42786 1.60423 0.94648 0.92829 0.93922 0.94143 0.92435 0.92646 0.95934 0.93030 0.89255 0.92332 0.93532 0.90578 0.87830 0.84175 0.90296 0.89716 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.18 37.16 0.34 -2.41 16 2 C 0.17 3.56 3.37 -67.93 -0.23 3.33 16 3 C -0.14 -2.99 9.09 37.16 0.34 -2.66 16 4 N -0.56 -12.79 2.30 -158.16 -0.36 -13.16 16 5 C -0.30 -7.33 6.22 -15.06 -0.09 -7.42 16 6 H 0.05 1.36 7.60 -52.48 -0.40 0.96 16 7 C 0.05 1.33 3.01 -17.43 -0.05 1.28 16 8 N -0.82 -22.00 10.08 55.49 0.56 -21.44 16 9 Si 0.87 19.99 27.54 -169.99 -4.68 15.31 16 10 H -0.27 -6.02 6.30 56.52 0.36 -5.66 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.15 3.33 3.56 -67.94 -0.24 3.08 16 14 H 0.07 1.46 7.66 -51.93 -0.40 1.07 16 15 C -0.13 -2.46 6.39 -25.10 -0.16 -2.62 16 16 C 0.11 2.18 6.34 -3.12 -0.02 2.16 16 17 N -0.59 -12.62 2.16 -164.84 -0.36 -12.98 16 18 C 0.10 2.02 6.82 -67.93 -0.46 1.56 16 19 C -0.18 -3.59 9.77 -26.73 -0.26 -3.85 16 20 C -0.21 -3.65 10.34 -26.73 -0.28 -3.93 16 21 C 0.55 13.08 4.56 -10.86 -0.05 13.03 16 22 O -0.54 -14.43 14.15 5.56 0.08 -14.35 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 1.03 7.60 -51.93 -0.39 0.64 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.83 7.63 -51.93 -0.40 0.43 16 27 H 0.06 1.35 7.55 -51.93 -0.39 0.96 16 28 H 0.05 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.09 1.64 7.85 -51.93 -0.41 1.23 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.63 3.33 -51.93 -0.17 1.46 16 35 H 0.10 1.91 8.14 -51.93 -0.42 1.48 16 36 H 0.14 3.36 5.29 -51.93 -0.27 3.09 16 37 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 299.61 15.07 4.52 4.52 Total: -1.00 -28.00 299.61 -7.66 -35.66 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.24 Total: 4.87 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.17 Total: 1.57 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: -0.16 Total: -47.58 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.08 Total: -14.35 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.68 Total: 15.31 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.00 -7.66 -35.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685984972.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.030 kcal (2) G-P(sol) polarization free energy of solvation -27.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds