Wall clock time and date at job start Mon Mar 30 2020 04:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46866 * 2 1 4 4 N 1.46497 * 109.47106 * 119.99649 * 2 1 3 5 5 C 1.46822 * 124.33162 * 119.98780 * 4 2 1 6 6 C 1.54479 * 105.44257 * 196.99946 * 5 4 2 7 7 C 1.54630 * 101.79921 * 334.62686 * 6 5 4 8 8 H 1.08994 * 110.48239 * 266.10158 * 7 6 5 9 9 N 1.46498 * 110.48443 * 143.59192 * 7 6 5 10 10 C 1.36941 * 119.99918 * 299.99965 * 9 7 6 11 11 H 1.07997 * 119.99846 * 307.99459 * 10 9 7 12 12 C 1.38806 * 120.00049 * 128.00094 * 10 9 7 13 13 N 1.31627 * 119.99979 * 345.46434 * 12 10 9 14 14 Si 1.86800 * 120.00484 * 165.46803 * 12 10 9 15 15 H 1.48501 * 109.46794 * 359.97438 * 14 12 10 16 16 H 1.48490 * 109.47352 * 119.99616 * 14 12 10 17 17 H 1.48499 * 109.47088 * 240.00062 * 14 12 10 18 18 C 1.46496 * 120.00070 * 120.00538 * 9 7 6 19 19 C 1.53002 * 117.50035 * 181.99850 * 18 9 7 20 20 C 1.52996 * 59.99894 * 252.50465 * 19 18 9 21 21 C 1.34422 * 124.35220 * 300.02297 * 4 2 1 22 22 O 1.21280 * 124.93955 * 359.62890 * 21 4 2 23 23 H 1.08997 * 109.46609 * 300.00249 * 1 2 3 24 24 H 1.09000 * 109.46941 * 59.99714 * 1 2 3 25 25 H 1.08996 * 109.46842 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46854 * 240.00244 * 2 1 3 27 27 H 1.08998 * 109.46889 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47271 * 299.99690 * 3 2 1 29 29 H 1.08994 * 109.47680 * 59.99649 * 3 2 1 30 30 H 1.08990 * 110.23998 * 78.01845 * 5 4 2 31 31 H 1.09001 * 110.28126 * 316.00055 * 5 4 2 32 32 H 1.09001 * 110.97005 * 216.48849 * 6 5 4 33 33 H 1.08999 * 110.97066 * 92.76550 * 6 5 4 34 34 H 0.96996 * 119.99783 * 176.53325 * 13 12 10 35 35 H 1.09001 * 115.54826 * 327.70149 * 18 9 7 36 36 H 1.08997 * 117.50113 * 359.97438 * 19 18 9 37 37 H 1.09003 * 117.49866 * 145.01445 * 19 18 9 38 38 H 1.09006 * 117.50256 * 252.51165 * 20 19 18 39 39 H 1.09005 * 117.52186 * 107.47594 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.8658 -1.8893 1.1724 6 6 2.7612 -2.4952 2.5895 7 6 2.4036 -1.2534 3.4387 8 1 3.3049 -0.8045 3.8562 9 7 1.4698 -1.6150 4.5080 10 6 0.2472 -2.1483 4.1979 11 1 -0.3973 -1.6465 3.4914 12 6 -0.1637 -3.3338 4.7917 13 7 0.7094 -4.0921 5.4204 14 14 -1.9556 -3.8531 4.6984 15 1 -2.7275 -2.8344 3.9423 16 1 -2.0558 -5.1638 4.0078 17 1 -2.5082 -3.9735 6.0715 18 6 1.8438 -1.4061 5.9089 19 6 0.8445 -1.8472 6.9802 20 6 1.0592 -0.3583 6.7009 21 6 1.7477 -0.3084 2.4562 22 8 1.0749 0.6535 2.7610 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 3.8982 -1.6170 0.9538 31 1 2.4968 -2.5981 0.4310 32 1 3.7144 -2.9209 2.9031 33 1 1.9684 -3.2417 2.6371 34 1 0.4138 -4.8945 5.8782 35 1 2.9046 -1.5166 6.1337 36 1 -0.0914 -2.2924 6.6428 37 1 1.2478 -2.2481 7.9102 38 1 1.6038 0.2204 7.4471 39 1 0.2650 0.1760 6.1795 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686013023.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:58 Heat of formation + Delta-G solvation = 20.163533 kcal Electronic energy + Delta-G solvation = -20063.966796 eV Core-core repulsion = 17201.393754 eV Total energy + Delta-G solvation = -2862.573042 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.81817 -36.79665 -35.56651 -34.48451 -32.33435 -30.96295 -28.26786 -26.92094 -26.17683 -24.13606 -21.82561 -21.07953 -20.78004 -19.84618 -18.20894 -16.61784 -15.98193 -15.70640 -14.97892 -14.54207 -14.35184 -13.75917 -13.34312 -13.04207 -13.03507 -12.84214 -12.52054 -12.22240 -11.80586 -11.72117 -11.35354 -11.22860 -11.15547 -10.99492 -10.89961 -10.77937 -10.39285 -10.24603 -10.12124 -9.84474 -9.41079 -8.87581 -8.71541 -8.18747 -8.08736 -6.36956 -5.76356 -3.59855 3.29801 3.39596 3.40507 3.47106 3.63580 4.40836 4.97960 5.18281 5.20691 5.32362 5.38623 5.41064 5.45035 5.68297 5.71851 5.80600 5.85877 5.94253 6.05062 6.12569 6.14344 6.18342 6.25781 6.46383 6.52042 6.58720 6.60342 6.68816 6.82389 6.98604 7.16453 7.28016 7.36492 7.67518 7.83004 7.85815 8.59985 9.10012 9.17788 9.66999 10.36761 11.13926 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.021870 B = 0.008630 C = 0.007729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.988574 B = 3243.852165 C = 3621.897780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.154 3.846 3 C -0.164 4.164 4 N -0.626 5.626 5 C 0.108 3.892 6 C -0.138 4.138 7 C 0.150 3.850 8 H 0.082 0.918 9 N -0.529 5.529 10 C -0.270 4.270 11 H 0.053 0.947 12 C 0.040 3.960 13 N -0.866 5.866 14 Si 0.884 3.116 15 H -0.274 1.274 16 H -0.287 1.287 17 H -0.284 1.284 18 C 0.149 3.851 19 C -0.150 4.150 20 C -0.241 4.241 21 C 0.517 3.483 22 O -0.528 6.528 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.254 0.746 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.163 3.558 -7.987 10.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.051 3.949 3 C -0.223 4.223 4 N -0.362 5.362 5 C -0.016 4.016 6 C -0.177 4.177 7 C 0.039 3.961 8 H 0.100 0.900 9 N -0.245 5.245 10 C -0.400 4.400 11 H 0.070 0.930 12 C -0.163 4.163 13 N -0.504 5.504 14 Si 0.712 3.288 15 H -0.198 1.198 16 H -0.213 1.213 17 H -0.210 1.210 18 C 0.041 3.959 19 C -0.188 4.188 20 C -0.281 4.281 21 C 0.304 3.696 22 O -0.403 6.403 23 H 0.091 0.909 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.784 3.897 -7.830 9.969 hybrid contribution -0.986 -0.490 -0.021 1.101 sum 3.798 3.407 -7.851 9.363 Atomic orbital electron populations 1.22157 0.95185 1.02406 1.02645 1.20773 0.94285 0.92693 0.87101 1.22163 1.00781 0.96486 1.02830 1.48447 1.52100 1.29706 1.05983 1.22048 0.93378 0.86420 0.99730 1.23024 1.03160 0.99888 0.91668 1.20990 0.93015 0.92625 0.89506 0.90016 1.42863 1.14316 1.69881 0.97456 1.18749 0.92727 1.01395 1.27138 0.92965 1.25428 0.97224 0.94736 0.98960 1.70131 1.32089 1.13383 1.34763 0.86563 0.86029 0.78370 0.77884 1.19819 1.21306 1.21044 1.20695 0.92925 0.98907 0.83419 1.22954 1.03394 0.94304 0.98177 1.23502 1.06386 0.92985 1.05276 1.21973 0.79406 0.84777 0.83490 1.90560 1.38930 1.29336 1.81507 0.90856 0.92426 0.92497 0.90469 0.92926 0.92237 0.90963 0.92587 0.91750 0.91015 0.88074 0.93560 0.90383 0.87591 0.91741 0.91737 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 9.20 37.16 0.34 -2.24 16 2 C 0.15 2.28 3.47 -67.93 -0.24 2.04 16 3 C -0.16 -2.26 9.20 37.16 0.34 -1.92 16 4 N -0.63 -10.86 2.83 -164.80 -0.47 -11.33 16 5 C 0.11 1.62 7.31 -3.09 -0.02 1.59 16 6 C -0.14 -2.52 6.76 -25.10 -0.17 -2.69 16 7 C 0.15 3.16 3.48 -67.94 -0.24 2.92 16 8 H 0.08 1.60 7.97 -51.93 -0.41 1.18 16 9 N -0.53 -12.96 2.66 -158.17 -0.42 -13.38 16 10 C -0.27 -7.22 7.26 -15.06 -0.11 -7.33 16 11 H 0.05 1.53 7.62 -52.49 -0.40 1.13 16 12 C 0.04 1.05 3.14 -17.43 -0.05 1.00 16 13 N -0.87 -23.25 11.57 55.49 0.64 -22.60 16 14 Si 0.88 21.12 29.44 -169.99 -5.00 16.12 16 15 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 C 0.15 3.50 6.00 -67.93 -0.41 3.09 16 19 C -0.15 -3.54 8.34 -26.73 -0.22 -3.76 16 20 C -0.24 -5.38 10.37 -26.73 -0.28 -5.65 16 21 C 0.52 10.99 6.21 -10.86 -0.07 10.92 16 22 O -0.53 -12.93 15.11 5.56 0.08 -12.85 16 23 H 0.07 1.39 6.79 -51.93 -0.35 1.03 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 29 H 0.07 1.21 6.78 -51.93 -0.35 0.86 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.10 2.21 7.21 -51.93 -0.37 1.84 16 34 H 0.25 6.66 8.32 -40.82 -0.34 6.32 16 35 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 36 H 0.11 2.78 5.07 -51.93 -0.26 2.52 16 37 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 LS Contribution 311.05 15.07 4.69 4.69 Total: -1.00 -29.58 311.05 -7.96 -37.54 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.36 Total: 3.83 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -1.12 Total: -2.02 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.24 Total: -47.31 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.08 Total: -12.85 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.00 Total: 16.12 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.58 -7.96 -37.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686013023.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.703 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds