Wall clock time and date at job start Mon Mar 30 2020 04:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46769 * 2 1 4 4 H 1.09007 * 109.47145 * 304.99277 * 3 2 1 5 5 C 1.50707 * 109.47112 * 185.00130 * 3 2 1 6 6 H 1.07998 * 120.00049 * 239.99769 * 5 3 2 7 7 C 1.37881 * 119.99925 * 59.99507 * 5 3 2 8 8 N 1.31517 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99556 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47510 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47200 * 120.00398 * 9 7 5 12 12 H 1.48505 * 109.46878 * 239.99713 * 9 7 5 13 13 N 1.46497 * 109.47313 * 65.00173 * 3 2 1 14 14 C 1.34777 * 119.99525 * 274.99614 * 13 3 2 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 3 17 17 C 1.56250 * 116.68822 * 297.69171 * 16 14 13 18 18 C 1.56953 * 102.16159 * 200.71241 * 17 16 14 19 19 N 1.49519 * 105.47097 * 358.87509 * 18 17 16 20 20 C 1.49525 * 105.92336 * 289.06084 * 19 18 17 21 21 C 1.54651 * 105.28324 * 71.26155 * 20 19 18 22 22 C 1.50470 * 102.03696 * 35.47076 * 19 18 17 23 23 H 1.08997 * 109.47199 * 299.99670 * 1 2 3 24 24 H 1.08992 * 109.47177 * 60.00686 * 1 2 3 25 25 H 1.09001 * 109.46770 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47412 * 240.00234 * 2 1 3 27 27 H 1.09001 * 109.47746 * 119.99475 * 2 1 3 28 28 H 0.97001 * 119.99544 * 179.97438 * 8 7 5 29 29 H 0.97000 * 120.00580 * 95.00360 * 13 3 2 30 30 H 1.09000 * 110.66822 * 319.47099 * 17 16 14 31 31 H 1.08992 * 110.66858 * 82.61133 * 17 16 14 32 32 H 1.08993 * 109.92115 * 240.00432 * 18 17 16 33 33 H 1.09004 * 110.46226 * 118.02785 * 18 17 16 34 34 H 1.09004 * 110.27501 * 312.30713 * 20 19 18 35 35 H 1.08993 * 110.27865 * 190.21257 * 20 19 18 36 36 H 1.09007 * 110.66478 * 242.22461 * 21 20 19 37 37 H 1.08998 * 110.67429 * 119.09127 * 21 20 19 38 38 H 1.08994 * 111.91345 * 188.40400 * 22 19 18 39 39 H 1.08997 * 111.90930 * 62.18982 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8891 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8802 -1.3811 10 1 6.5987 1.5455 -0.1937 11 1 6.4962 -0.5188 -1.4626 12 1 6.3999 1.6158 -2.6092 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3668 15 8 -0.3397 2.6319 0.4343 16 6 0.0340 3.3328 2.6566 17 6 -0.0356 2.4241 3.9258 18 6 -0.9667 3.2556 4.8771 19 7 -1.2992 4.5017 4.1206 20 6 -0.0400 5.3071 4.0830 21 6 0.8989 4.5508 3.1144 22 6 -1.3901 3.9954 2.7065 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.8292 -0.0604 -2.9502 29 1 2.2718 2.1233 1.9978 30 1 -0.4756 1.4569 3.6829 31 1 0.9545 2.2985 4.3637 32 1 -0.4342 3.5021 5.7956 33 1 -1.8752 2.6977 5.1043 34 1 0.4048 5.3594 5.0767 35 1 -0.2438 6.3093 3.7061 36 1 1.7956 4.2124 3.6336 37 1 1.1601 5.1788 2.2627 38 1 -1.4852 4.8096 1.9883 39 1 -2.1855 3.2595 2.5884 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715822599.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:59 Heat of formation + Delta-G solvation = -44.609167 kcal Electronic energy + Delta-G solvation = -19625.555642 eV Core-core repulsion = 16760.173845 eV Total energy + Delta-G solvation = -2865.381797 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.01610 -39.96592 -36.89791 -34.33269 -33.03310 -31.48889 -31.38217 -29.02681 -28.84596 -25.21623 -23.56861 -23.42913 -21.71805 -21.45434 -20.37772 -18.63302 -17.47349 -17.25638 -17.03507 -16.35759 -16.22490 -15.93546 -15.28250 -14.63927 -14.25000 -13.98877 -13.73857 -13.67251 -13.46256 -13.17974 -13.11142 -12.89982 -12.72824 -12.63906 -12.37575 -12.20222 -12.14903 -12.06485 -11.64003 -11.59378 -11.21360 -11.05617 -10.64644 -10.49722 -10.04292 -9.64304 -8.17441 -6.34811 1.42906 1.44314 1.55783 1.76996 2.33628 2.58043 2.89194 3.12165 3.51846 3.53915 3.86975 4.04772 4.06361 4.19658 4.35911 4.46900 4.52708 4.55319 4.55727 4.66521 4.75745 4.81698 4.86720 4.95297 4.96731 5.03948 5.05000 5.18323 5.24333 5.41910 5.49468 5.54918 5.61596 5.71034 5.77931 5.91343 6.15736 6.73570 6.98463 7.32427 7.57047 8.88194 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.031755 B = 0.005923 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.550372 B = 4726.076379 C = 5176.582814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.004 1.004 5 C -0.546 4.546 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.698 5.698 14 C 0.534 3.466 15 O -0.587 6.587 16 C -0.134 4.134 17 C -0.128 4.128 18 C 0.018 3.982 19 N -0.472 5.472 20 C 0.018 3.982 21 C -0.132 4.132 22 C 0.040 3.960 23 H 0.043 0.957 24 H 0.024 0.976 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.265 0.735 29 H 0.401 0.599 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.706 5.575 15.290 16.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.014 0.986 5 C -0.584 4.584 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.211 1.211 13 N -0.346 5.346 14 C 0.320 3.680 15 O -0.468 6.468 16 C -0.139 4.139 17 C -0.167 4.167 18 C -0.111 4.111 19 N -0.192 5.192 20 C -0.110 4.110 21 C -0.171 4.171 22 C -0.089 4.089 23 H 0.062 0.938 24 H 0.043 0.957 25 H 0.064 0.936 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.235 0.765 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.827 5.850 14.762 16.597 hybrid contribution 1.811 -0.675 -0.969 2.162 sum -3.015 5.175 13.794 15.038 Atomic orbital electron populations 1.21671 0.97036 0.99124 1.00182 1.21777 0.93684 0.99170 1.01286 1.18377 0.93674 0.89159 0.81360 0.98575 1.21594 0.91376 1.38810 1.06654 0.91096 1.25769 1.03284 0.94384 0.95030 1.70058 1.37009 1.38442 1.09885 0.85332 0.79168 0.77844 0.78202 1.18412 1.20425 1.21081 1.46211 1.15357 1.55625 1.17385 1.20007 0.81666 0.77955 0.88365 1.90656 1.52697 1.61266 1.42177 1.23734 0.99264 0.98132 0.92802 1.23603 1.02253 0.97974 0.92893 1.24066 0.99271 0.90508 0.97215 1.69978 1.29865 1.12973 1.06335 1.23656 0.88965 0.98036 1.00384 1.23225 0.99014 0.94848 0.99964 1.24208 0.94336 0.98592 0.91777 0.93813 0.95676 0.93557 0.91046 0.94015 0.92605 0.76456 0.91730 0.88789 0.87975 0.89301 0.87871 0.89523 0.88846 0.92192 0.90354 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.51 71.98 0.61 -4.95 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.75 16 3 C 0.28 14.17 2.24 44.25 0.10 14.27 16 4 H 0.00 -0.22 7.58 -2.38 -0.02 -0.24 16 5 C -0.55 -28.63 8.73 25.60 0.22 -28.40 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.02 0.82 5.29 84.66 0.45 1.27 16 8 N -0.92 -52.27 11.29 21.45 0.24 -52.03 16 9 Si 0.97 41.73 29.54 68.60 2.03 43.76 16 10 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 11 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 12 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 13 N -0.70 -28.42 5.02 -446.08 -2.24 -30.66 16 14 C 0.53 20.92 5.86 87.66 0.51 21.43 16 15 O -0.59 -28.09 13.70 -3.04 -0.04 -28.13 16 16 C -0.13 -3.76 1.36 -49.21 -0.07 -3.82 16 17 C -0.13 -2.78 6.21 33.11 0.21 -2.57 16 18 C 0.02 0.32 6.67 87.18 0.58 0.91 16 19 N -0.47 -10.27 6.94 -851.63 -5.91 -16.18 16 20 C 0.02 0.34 6.61 86.35 0.57 0.91 16 21 C -0.13 -2.96 6.02 32.28 0.19 -2.76 16 22 C 0.04 1.10 6.08 87.06 0.53 1.63 16 23 H 0.04 1.90 5.64 -2.39 -0.01 1.89 16 24 H 0.02 1.22 7.85 -2.39 -0.02 1.20 16 25 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.07 3.94 5.95 -2.38 -0.01 3.93 16 27 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.40 13.96 8.54 -92.71 -0.79 13.17 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 1.71 7.78 -2.39 -0.02 1.69 16 32 H 0.10 1.36 7.69 -2.39 -0.02 1.34 16 33 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.10 1.41 7.69 -2.38 -0.02 1.39 16 35 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.09 1.77 7.78 -2.38 -0.02 1.75 16 37 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -64.49 304.53 -1.60 -66.09 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.24 Total: 25.00 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 4.08 Total: -7.84 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -7.91 Total: -98.87 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.04 Total: -28.13 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -64.49 -1.60 -66.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715822599.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.481 kcal (2) G-P(sol) polarization free energy of solvation -64.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds