Wall clock time and date at job start Mon Mar 30 2020 04:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32993 * 120.00083 * 2 1 4 4 C 1.47095 * 119.99817 * 179.97438 * 3 2 1 5 5 O 1.21607 * 120.00486 * 5.92751 * 4 3 2 6 6 N 1.34786 * 119.99776 * 185.92495 * 4 3 2 7 7 C 1.46970 * 120.59138 * 185.21849 * 6 4 3 8 8 C 1.53373 * 108.63091 * 235.20351 * 7 6 4 9 9 H 1.08994 * 109.75018 * 190.74777 * 8 7 6 10 10 C 1.53000 * 109.60922 * 70.32097 * 8 7 6 11 11 N 1.46967 * 108.63700 * 310.57513 * 8 7 6 12 12 C 1.36931 * 120.59452 * 235.20807 * 11 8 7 13 13 H 1.08000 * 120.00030 * 147.71062 * 12 11 8 14 14 C 1.38815 * 120.00047 * 327.71126 * 12 11 8 15 15 N 1.31621 * 120.00066 * 343.78787 * 14 12 11 16 16 Si 1.86793 * 119.99920 * 163.78729 * 14 12 11 17 17 H 1.48503 * 109.47299 * 90.00134 * 16 14 12 18 18 H 1.48501 * 109.47407 * 210.00253 * 16 14 12 19 19 H 1.48504 * 109.47465 * 330.00498 * 16 14 12 20 20 C 1.46970 * 118.80909 * 55.22738 * 11 8 7 21 21 H 1.08998 * 109.60852 * 64.68923 * 20 11 8 22 22 C 1.52997 * 109.60921 * 185.03138 * 20 11 8 23 23 C 1.46959 * 120.59444 * 5.19275 * 6 4 3 24 24 H 1.08992 * 109.47402 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47113 * 299.99963 * 1 2 3 26 26 H 1.08999 * 109.46749 * 59.99747 * 1 2 3 27 27 H 1.08000 * 119.99850 * 180.02562 * 2 1 3 28 28 H 1.08000 * 120.00067 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.61051 * 115.46344 * 7 6 4 30 30 H 1.08997 * 109.61157 * 354.94274 * 7 6 4 31 31 H 1.09001 * 109.47092 * 300.85089 * 10 8 7 32 32 H 1.09001 * 109.46962 * 180.85296 * 10 8 7 33 33 H 1.09000 * 109.47194 * 60.85368 * 10 8 7 34 34 H 0.96989 * 119.99870 * 184.82795 * 15 14 12 35 35 H 1.09004 * 109.47223 * 58.77385 * 22 20 11 36 36 H 1.08993 * 109.47185 * 178.77908 * 22 20 11 37 37 H 1.09008 * 109.47224 * 298.78296 * 22 20 11 38 38 H 1.09003 * 109.60759 * 5.05490 * 23 6 4 39 39 H 1.09000 * 109.75422 * 244.62654 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6430 1.1517 0.0006 5 8 4.2511 0.1042 -0.1077 6 7 4.3169 2.3127 0.1211 7 6 5.7820 2.3423 0.0090 8 6 6.3569 2.9958 1.2718 9 1 7.4180 3.2008 1.1300 10 6 6.1704 2.0576 2.4659 11 7 5.6398 4.2550 1.5171 12 6 6.3244 5.4345 1.6395 13 1 5.8735 6.3577 1.3066 14 6 7.5981 5.4437 2.1913 15 7 8.0243 4.4065 2.8805 16 14 8.7073 6.9281 1.9559 17 1 8.4892 7.8901 3.0660 18 1 10.1263 6.4902 1.9520 19 1 8.3883 7.5844 0.6625 20 6 4.1747 4.2254 1.6291 21 1 3.8865 3.6471 2.5069 22 6 3.6405 5.6533 1.7569 23 6 3.5997 3.5718 0.3663 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 2.0470 -0.9353 -0.0004 28 1 1.6321 2.0871 0.0004 29 1 6.0703 2.9232 -0.8671 30 1 6.1625 1.3250 -0.0820 31 1 5.1091 1.8493 2.6020 32 1 6.5660 2.5305 3.3648 33 1 6.7031 1.1247 2.2817 34 1 8.8857 4.4402 3.3248 35 1 3.9433 6.2339 0.8854 36 1 2.5525 5.6302 1.8179 37 1 4.0454 6.1135 2.6583 38 1 2.5391 3.3664 0.5112 39 1 3.7298 4.2415 -0.4839 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911703024.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:39 Heat of formation + Delta-G solvation = 8.855298 kcal Electronic energy + Delta-G solvation = -19691.582810 eV Core-core repulsion = 16828.519406 eV Total energy + Delta-G solvation = -2863.063404 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.66169 -37.33844 -34.38270 -33.95376 -32.64193 -31.29845 -28.24192 -27.79181 -26.23201 -25.27237 -23.60592 -21.52981 -20.48608 -19.11196 -18.23078 -17.12576 -16.06411 -15.43729 -15.10429 -14.63821 -14.04017 -13.81916 -13.67098 -13.40306 -13.22528 -13.12068 -12.60201 -12.31822 -11.93907 -11.76036 -11.65260 -11.22500 -11.14354 -10.96951 -10.73387 -10.62606 -10.55425 -10.14740 -10.03314 -9.71248 -9.64689 -9.28858 -9.20694 -8.50059 -8.07938 -6.55921 -5.81660 -3.27363 1.56308 3.34600 3.43020 3.43761 3.54502 3.70528 4.44877 4.80274 5.00225 5.12673 5.31651 5.35180 5.44079 5.53892 5.68718 5.69934 5.74852 5.93313 6.06364 6.17781 6.27179 6.30564 6.37263 6.46227 6.49265 6.56003 6.68964 6.84785 6.94565 6.95909 7.06513 7.13370 7.59453 7.70154 7.83498 8.02474 8.45382 8.67228 9.18746 9.79973 10.39499 11.26511 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.036065 B = 0.006178 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.189782 B = 4530.928542 C = 4953.824441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.081 4.081 3 C -0.213 4.213 4 C 0.538 3.462 5 O -0.562 6.562 6 N -0.589 5.589 7 C 0.092 3.908 8 C 0.182 3.818 9 H 0.100 0.900 10 C -0.139 4.139 11 N -0.580 5.580 12 C -0.257 4.257 13 H 0.068 0.932 14 C 0.010 3.990 15 N -0.896 5.896 16 Si 0.900 3.100 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.279 1.279 20 C 0.153 3.847 21 H 0.031 0.969 22 C -0.134 4.134 23 C 0.093 3.907 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.021 0.979 32 H 0.077 0.923 33 H 0.027 0.973 34 H 0.254 0.746 35 H 0.056 0.944 36 H 0.039 0.961 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.107 -3.214 -4.594 13.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.101 4.101 3 C -0.234 4.234 4 C 0.328 3.672 5 O -0.443 6.443 6 N -0.319 5.319 7 C -0.032 4.032 8 C 0.075 3.925 9 H 0.118 0.882 10 C -0.198 4.198 11 N -0.303 5.303 12 C -0.387 4.387 13 H 0.086 0.914 14 C -0.190 4.190 15 N -0.540 5.540 16 Si 0.729 3.271 17 H -0.215 1.215 18 H -0.216 1.216 19 H -0.205 1.205 20 C 0.046 3.954 21 H 0.048 0.952 22 C -0.192 4.192 23 C -0.032 4.032 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.141 0.859 28 H 0.144 0.856 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.040 0.960 32 H 0.096 0.904 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.563 -3.753 -4.617 13.004 hybrid contribution 0.638 0.871 0.050 1.081 sum -10.925 -2.883 -4.567 12.187 Atomic orbital electron populations 1.20969 0.92349 1.02865 1.02565 1.23657 0.96018 0.98599 0.91857 1.22768 0.93926 0.99379 1.07313 1.18548 0.88029 0.83530 0.77073 1.90715 1.70294 1.31147 1.52189 1.47887 1.08083 1.06936 1.69031 1.22480 0.78471 1.01550 1.00672 1.20666 0.97573 0.84812 0.89439 0.88240 1.21988 0.98197 0.97659 1.01965 1.44118 0.99016 1.04250 1.82882 1.19097 0.97584 0.86925 1.35049 0.91403 1.25160 0.99502 0.97064 0.97256 1.69936 1.20800 1.29822 1.33426 0.86347 0.80267 0.82428 0.78016 1.21465 1.21624 1.20491 1.20785 0.86827 0.94589 0.93208 0.95158 1.21752 0.97786 0.96758 1.02908 1.22489 0.95293 0.85148 1.00245 0.91553 0.90869 0.90979 0.85904 0.85631 0.92361 0.90163 0.95955 0.90423 0.95355 0.93531 0.92537 0.94186 0.91608 0.90876 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 10.19 36.01 0.37 -0.73 16 2 C -0.08 -1.00 9.84 -36.12 -0.36 -1.35 16 3 C -0.21 -3.02 8.89 -37.81 -0.34 -3.35 16 4 C 0.54 10.02 7.63 -12.66 -0.10 9.93 16 5 O -0.56 -12.19 15.65 5.27 0.08 -12.11 16 6 N -0.59 -11.14 2.59 -173.88 -0.45 -11.60 16 7 C 0.09 1.90 5.97 -3.59 -0.02 1.88 16 8 C 0.18 4.25 2.34 -67.48 -0.16 4.09 16 9 H 0.10 2.60 6.27 -51.93 -0.33 2.28 16 10 C -0.14 -3.24 8.95 37.16 0.33 -2.91 16 11 N -0.58 -13.65 2.66 -157.02 -0.42 -14.06 16 12 C -0.26 -6.56 8.49 -15.06 -0.13 -6.69 16 13 H 0.07 1.69 6.31 -52.49 -0.33 1.36 16 14 C 0.01 0.25 4.90 -17.43 -0.09 0.17 16 15 N -0.90 -24.73 10.20 55.49 0.57 -24.16 16 16 Si 0.90 20.91 29.59 -169.99 -5.03 15.88 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C 0.15 3.03 3.23 -67.48 -0.22 2.81 16 21 H 0.03 0.65 7.41 -51.93 -0.38 0.27 16 22 C -0.13 -2.33 7.98 37.16 0.30 -2.03 16 23 C 0.09 1.57 5.79 -3.60 -0.02 1.55 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.12 1.65 7.50 -52.49 -0.39 1.25 16 28 H 0.13 1.49 6.04 -52.49 -0.32 1.17 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.08 1.70 6.96 -51.93 -0.36 1.34 16 31 H 0.02 0.50 7.02 -51.93 -0.36 0.14 16 32 H 0.08 2.00 7.00 -51.93 -0.36 1.64 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.25 6.89 8.32 -40.82 -0.34 6.55 16 35 H 0.06 0.99 7.29 -51.93 -0.38 0.61 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 1.26 7.76 -51.92 -0.40 0.85 16 38 H 0.07 1.01 5.40 -51.93 -0.28 0.73 16 39 H 0.06 1.07 8.11 -51.93 -0.42 0.65 16 LS Contribution 306.45 15.07 4.62 4.62 Total: -1.00 -29.62 306.45 -7.05 -36.67 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.00 Total: 1.40 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -0.42 Total: 3.36 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.30 Total: -49.82 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.08 Total: -12.11 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.62 -7.05 -36.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911703024.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.527 kcal (2) G-P(sol) polarization free energy of solvation -29.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds