Wall clock time and date at job start Mon Mar 30 2020 04:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99813 * 2 1 4 4 H 1.48502 * 109.46693 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46689 * 299.99571 * 3 2 1 6 6 H 1.48493 * 109.47295 * 59.99909 * 3 2 1 7 7 C 1.37876 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99474 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00210 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47131 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.46930 * 179.97438 * 10 9 7 12 12 C 1.46855 * 111.00034 * 66.04620 * 11 10 9 13 13 C 1.53031 * 109.52458 * 174.15560 * 12 11 10 14 14 C 1.53118 * 109.27665 * 59.18114 * 13 12 11 15 15 C 1.53118 * 109.16204 * 302.34466 * 14 13 12 16 16 H 1.09000 * 109.49923 * 297.67257 * 15 14 13 17 17 C 1.53001 * 109.50225 * 177.59756 * 15 14 13 18 18 H 1.09003 * 110.72277 * 296.90222 * 17 15 14 19 19 C 1.54937 * 110.67053 * 59.99822 * 17 15 14 20 20 C 1.54599 * 103.08133 * 155.93941 * 19 17 15 21 21 C 1.53997 * 105.13815 * 337.95045 * 20 19 17 22 22 N 1.47896 * 107.05754 * 358.77976 * 21 20 19 23 23 C 1.46847 * 111.00567 * 301.83911 * 11 10 9 24 24 H 0.97007 * 120.00089 * 0.02562 * 1 2 3 25 25 H 1.08992 * 109.47301 * 59.99501 * 9 7 2 26 26 H 1.09010 * 109.46803 * 299.99287 * 9 7 2 27 27 H 1.09004 * 109.47301 * 60.00072 * 10 9 7 28 28 H 1.09000 * 109.47216 * 299.99771 * 10 9 7 29 29 H 1.09008 * 109.45503 * 54.14272 * 12 11 10 30 30 H 1.08995 * 109.45261 * 294.17332 * 12 11 10 31 31 H 1.08997 * 109.50672 * 299.24134 * 13 12 11 32 32 H 1.09003 * 109.53441 * 179.14377 * 13 12 11 33 33 H 1.09004 * 109.52331 * 182.43982 * 14 13 12 34 34 H 1.09005 * 109.57493 * 62.28405 * 14 13 12 35 35 H 1.09002 * 110.72438 * 37.48998 * 19 17 15 36 36 H 1.08997 * 110.71973 * 274.38341 * 19 17 15 37 37 H 1.08999 * 110.30781 * 96.87090 * 20 19 17 38 38 H 1.09005 * 110.30457 * 218.93981 * 20 19 17 39 39 H 1.09008 * 109.91110 * 118.13320 * 21 20 19 40 40 H 1.08999 * 109.91411 * 239.22350 * 21 20 19 41 41 H 1.00900 * 110.99727 * 145.84528 * 22 21 20 42 42 H 1.08990 * 109.46601 * 65.81897 * 23 11 10 43 43 H 1.09007 * 109.45579 * 305.85353 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 0.7651 -5.1120 -1.2515 13 6 0.1328 -6.5053 -1.2769 14 6 -0.8058 -6.6565 -0.0766 15 6 -0.0149 -6.4189 1.2128 16 1 0.7655 -7.1742 1.3054 17 6 -0.9579 -6.5090 2.4143 18 1 -1.7145 -5.7255 2.3705 19 6 -1.6221 -7.9071 2.4847 20 6 -1.9923 -8.0438 3.9795 21 6 -1.0614 -7.0625 4.7157 22 7 -0.1968 -6.4347 3.6931 23 6 0.6216 -5.0281 1.1661 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8720 -3.6043 0.8905 28 1 2.8719 -3.6043 -0.8895 29 1 1.4451 -5.0062 -2.0969 30 1 -0.0177 -4.3566 -1.3183 31 1 0.9161 -7.2615 -1.2239 32 1 -0.4332 -6.6319 -2.1998 33 1 -1.2251 -7.6626 -0.0666 34 1 -1.6120 -5.9265 -0.1492 35 1 -0.9172 -8.6843 2.1892 36 1 -2.5156 -7.9414 1.8613 37 1 -3.0347 -7.7675 4.1378 38 1 -1.8157 -9.0637 4.3211 39 1 -1.6523 -6.2991 5.2219 40 1 -0.4523 -7.6019 5.4410 41 1 0.0117 -5.4774 3.9342 42 1 -0.1605 -4.2731 1.0878 43 1 1.1973 -4.8614 2.0766 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037918012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:04 Heat of formation + Delta-G solvation = -19.114766 kcal Electronic energy + Delta-G solvation = -19427.692837 eV Core-core repulsion = 16699.249655 eV Total energy + Delta-G solvation = -2728.443183 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.44375 -37.68999 -34.21794 -32.51378 -31.30890 -30.23417 -28.87578 -27.34345 -25.05374 -22.95999 -22.85581 -21.07354 -20.69775 -19.81396 -18.87655 -16.63891 -16.44996 -15.62944 -14.85443 -14.56255 -14.44519 -14.00970 -13.75052 -13.45422 -13.07643 -12.87942 -12.47548 -12.21726 -12.14837 -11.96354 -11.87365 -11.37366 -11.16927 -11.07514 -10.90935 -10.87247 -10.70360 -10.59765 -10.36964 -9.95583 -9.86978 -9.75904 -9.65172 -9.10054 -8.47681 -8.35629 -7.40065 -6.01996 -4.04514 3.29580 3.37171 3.41766 4.17096 4.42661 4.51308 4.71762 4.75869 4.95033 5.16642 5.20544 5.23554 5.33598 5.33970 5.44692 5.61996 5.67835 5.71448 5.85625 5.86423 5.92469 5.95711 6.04099 6.10911 6.16227 6.18724 6.24405 6.29136 6.48086 6.49588 6.57691 6.67560 6.76047 6.90774 6.98071 7.36054 7.58958 7.61666 7.75197 7.92982 8.00972 8.43479 9.03128 9.59782 11.09119 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024620 B = 0.005015 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.004035 B = 5581.433949 C = 6245.709142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.056 0.944 9 C -0.009 4.009 10 C 0.057 3.943 11 N -0.540 5.540 12 C 0.052 3.948 13 C -0.113 4.113 14 C -0.114 4.114 15 C -0.066 4.066 16 H 0.082 0.918 17 C 0.074 3.926 18 H 0.050 0.950 19 C -0.116 4.116 20 C -0.132 4.132 21 C 0.040 3.960 22 N -0.668 5.668 23 C 0.062 3.938 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.017 0.983 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.037 0.963 40 H 0.074 0.926 41 H 0.340 0.660 42 H 0.038 0.962 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.243 -15.740 4.281 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.047 4.047 10 C -0.070 4.070 11 N -0.263 5.263 12 C -0.076 4.076 13 C -0.151 4.151 14 C -0.152 4.152 15 C -0.085 4.085 16 H 0.100 0.900 17 C -0.036 4.036 18 H 0.068 0.932 19 C -0.155 4.155 20 C -0.171 4.171 21 C -0.089 4.089 22 N -0.298 5.298 23 C -0.066 4.066 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.036 0.964 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.093 0.907 41 H 0.156 0.844 42 H 0.056 0.944 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.585 -16.577 4.213 17.476 hybrid contribution -0.962 2.502 0.146 2.685 sum -4.547 -14.075 4.358 15.420 Atomic orbital electron populations 1.69981 1.06106 1.26433 1.51072 1.25022 0.94815 0.99275 0.95275 0.86549 0.80216 0.83791 0.77556 1.19640 1.21032 1.21040 1.21226 0.93094 0.90966 1.50333 0.92539 1.19665 0.95019 0.92831 0.97198 1.22303 0.96825 0.86889 1.00952 1.62286 1.27215 1.35274 1.01556 1.22029 0.96963 0.95716 0.92897 1.21559 0.98461 0.97837 0.97263 1.21611 0.98011 1.00898 0.94690 1.21088 0.96811 0.98608 0.92022 0.89984 1.22718 0.94118 0.96388 0.90376 0.93229 1.22497 1.00173 0.97226 0.95563 1.22402 0.98971 0.99789 0.95897 1.22594 0.94392 0.96930 0.95026 1.63094 1.41496 1.23151 1.02032 1.22016 0.95472 0.94934 0.94196 0.93127 0.96613 0.96439 0.92042 0.92165 0.91470 0.94245 0.91621 0.92192 0.92294 0.92424 0.90737 0.91322 0.91825 0.91281 0.94473 0.90747 0.84352 0.94421 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C -0.01 -0.23 4.27 -27.89 -0.12 -0.35 16 10 C 0.06 1.24 5.30 -3.83 -0.02 1.22 16 11 N -0.54 -10.09 4.86 -234.67 -1.14 -11.23 16 12 C 0.05 0.91 5.05 -3.83 -0.02 0.89 16 13 C -0.11 -1.57 6.09 -26.65 -0.16 -1.73 16 14 C -0.11 -1.50 5.01 -26.61 -0.13 -1.64 16 15 C -0.07 -0.94 2.13 -90.54 -0.19 -1.13 16 16 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 17 C 0.07 0.94 2.73 -65.52 -0.18 0.76 16 18 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 19 C -0.12 -1.23 5.39 -24.87 -0.13 -1.37 16 20 C -0.13 -1.26 6.93 -25.37 -0.18 -1.44 16 21 C 0.04 0.42 7.52 -2.76 -0.02 0.40 16 22 N -0.67 -8.46 6.91 -102.84 -0.71 -9.17 16 23 C 0.06 1.09 3.99 -3.84 -0.02 1.07 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.02 0.44 6.68 -51.93 -0.35 0.09 16 26 H 0.02 0.48 6.51 -51.92 -0.34 0.14 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.06 1.29 8.06 -51.93 -0.42 0.87 16 29 H 0.07 1.14 8.06 -51.92 -0.42 0.72 16 30 H 0.04 0.77 6.75 -51.93 -0.35 0.42 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.66 7.33 -51.93 -0.38 0.28 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 36 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.04 0.37 8.14 -51.92 -0.42 -0.05 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.34 4.37 8.52 -39.29 -0.33 4.03 16 42 H 0.04 0.75 6.61 -51.93 -0.34 0.41 16 43 H 0.07 1.27 7.57 -51.93 -0.39 0.87 16 LS Contribution 324.59 15.07 4.89 4.89 Total: -1.00 -29.84 324.59 -10.76 -40.60 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.93 Total: 1.32 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -1.58 Total: -16.82 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: -1.11 Total: -46.75 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.84 -10.76 -40.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037918012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.484 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds