Wall clock time and date at job start Mon Mar 30 2020 03:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30971 * 125.77493 * 2 1 4 4 N 1.40073 * 108.46932 * 179.76072 * 3 2 1 5 5 C 1.46500 * 126.07904 * 180.26491 * 4 3 2 6 6 C 1.36078 * 107.83962 * 0.42220 * 4 3 2 7 7 N 1.39706 * 126.28388 * 179.84733 * 6 4 3 8 8 C 1.46903 * 110.99883 * 304.80080 * 7 6 4 9 9 C 1.50709 * 109.47050 * 198.81158 * 8 7 6 10 10 H 1.08000 * 119.99660 * 5.59109 * 9 8 7 11 11 C 1.37875 * 119.99688 * 185.60293 * 9 8 7 12 12 N 1.31515 * 120.00233 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99531 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46706 * 89.99761 * 13 11 9 15 15 H 1.48496 * 109.46973 * 209.99390 * 13 11 9 16 16 H 1.48494 * 109.47254 * 329.99773 * 13 11 9 17 17 C 1.46899 * 111.00328 * 68.75498 * 7 6 4 18 18 C 1.52999 * 109.47003 * 47.24781 * 17 7 6 19 19 C 1.52997 * 109.47326 * 167.25290 * 17 7 6 20 20 C 1.36405 * 107.42926 * 359.58523 * 6 4 3 21 21 N 1.41393 * 126.09159 * 180.30230 * 20 6 4 22 22 H 1.08995 * 109.47282 * 269.98010 * 1 2 3 23 23 H 1.09000 * 109.47157 * 29.98058 * 1 2 3 24 24 H 1.09000 * 109.47134 * 149.97746 * 1 2 3 25 25 H 1.09002 * 109.47399 * 267.50548 * 5 4 3 26 26 H 1.09004 * 109.47151 * 27.50071 * 5 4 3 27 27 H 1.09000 * 109.47180 * 147.49753 * 5 4 3 28 28 H 1.08995 * 109.47247 * 318.80507 * 8 7 6 29 29 H 1.08995 * 109.47107 * 78.80919 * 8 7 6 30 30 H 0.96995 * 119.99860 * 180.02562 * 12 11 9 31 31 H 1.09002 * 109.46949 * 287.25715 * 17 7 6 32 32 H 1.09004 * 109.46778 * 62.86767 * 18 17 7 33 33 H 1.08999 * 109.47345 * 182.86574 * 18 17 7 34 34 H 1.08996 * 109.47541 * 302.86784 * 18 17 7 35 35 H 1.08997 * 109.47037 * 72.89363 * 19 17 7 36 36 H 1.09003 * 109.47073 * 192.89218 * 19 17 7 37 37 H 1.08994 * 109.47179 * 312.88922 * 19 17 7 38 38 H 0.96992 * 120.00319 * 359.97438 * 21 20 6 39 39 H 0.97002 * 119.99607 * 179.97438 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0626 0.0000 4 7 3.6100 0.6459 0.0055 5 6 4.7858 1.5197 0.0129 6 6 3.6227 -0.7148 -0.0006 7 7 4.7565 -1.5310 -0.0011 8 6 5.6443 -1.1981 -1.1231 9 6 6.5861 -2.3471 -1.3765 10 1 6.4725 -3.2697 -0.8266 11 6 7.5928 -2.2203 -2.3100 12 7 7.7309 -1.0969 -2.9797 13 14 8.7606 -3.6443 -2.6234 14 1 8.2106 -4.5078 -3.6992 15 1 10.0843 -3.1162 -3.0407 16 1 8.9151 -4.4408 -1.3797 17 6 5.4704 -1.4411 1.2796 18 6 4.4718 -1.5771 2.4308 19 6 6.5053 -2.5647 1.3667 20 6 2.3252 -1.1355 -0.0004 21 7 1.8853 -2.4793 0.0003 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 5.1091 1.7026 -1.0119 26 1 4.5315 2.4672 0.4881 27 1 5.5918 1.0397 0.5680 28 1 5.0475 -1.0140 -2.0164 29 1 6.2187 -0.3045 -0.8792 30 1 8.4389 -1.0079 -3.6367 31 1 5.9743 -0.4770 1.3479 32 1 4.0048 -2.5613 2.3922 33 1 4.9938 -1.4596 3.3804 34 1 3.7054 -0.8075 2.3399 35 1 7.3381 -2.3441 0.6990 36 1 6.8712 -2.6431 2.3904 37 1 6.0437 -3.5073 1.0727 38 1 2.5326 -3.2015 0.0003 39 1 0.9360 -2.6788 0.0008 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042528872.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:09 Heat of formation + Delta-G solvation = 85.814140 kcal Electronic energy + Delta-G solvation = -19869.690712 eV Core-core repulsion = 17042.257245 eV Total energy + Delta-G solvation = -2827.433467 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.80962 -37.23648 -34.15595 -32.82080 -32.29263 -30.74512 -29.45368 -28.17826 -26.21976 -25.65252 -24.46270 -22.16403 -20.75652 -19.53844 -18.73849 -16.72444 -16.28511 -15.43474 -15.17416 -14.98707 -14.59496 -14.11613 -13.70082 -13.38824 -13.19786 -12.79491 -12.39152 -12.27418 -12.07438 -11.96588 -11.78035 -11.59762 -11.36708 -11.10785 -10.90364 -10.80157 -10.39459 -10.36077 -10.20877 -9.99792 -9.71765 -9.20570 -8.48258 -8.37595 -7.64960 -6.44103 -6.08909 -4.08386 2.43456 3.06360 3.27811 3.34670 3.36856 3.47614 4.33739 4.63777 4.68508 5.12450 5.25649 5.41564 5.50685 5.58318 5.62099 5.68115 5.81283 5.87052 5.91670 6.00705 6.09897 6.22598 6.38357 6.41248 6.52368 6.59065 6.81319 6.91867 7.05375 7.17818 7.29287 7.42147 7.81241 7.98694 8.07955 8.25031 8.29308 8.62372 8.67177 8.96057 9.52912 11.01349 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.025438 B = 0.006987 C = 0.006742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.434889 B = 4006.365850 C = 4152.361984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.024 3.976 3 N -0.293 5.293 4 N -0.385 5.385 5 C 0.105 3.895 6 C 0.200 3.800 7 N -0.453 5.453 8 C 0.192 3.808 9 C -0.505 4.505 10 H 0.074 0.926 11 C 0.055 3.945 12 N -0.898 5.898 13 Si 0.896 3.104 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.272 1.272 17 C 0.089 3.911 18 C -0.143 4.143 19 C -0.137 4.137 20 C 0.070 3.930 21 N -0.871 5.871 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.026 0.974 29 H 0.005 0.995 30 H 0.261 0.739 31 H 0.032 0.968 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.034 0.966 37 H 0.059 0.941 38 H 0.400 0.600 39 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.435 0.481 8.187 11.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.143 4.143 3 N -0.120 5.120 4 N -0.176 5.176 5 C -0.037 4.037 6 C -0.021 4.021 7 N -0.177 5.177 8 C 0.068 3.932 9 C -0.543 4.543 10 H 0.092 0.908 11 C -0.146 4.146 12 N -0.537 5.537 13 Si 0.724 3.276 14 H -0.207 1.207 15 H -0.214 1.214 16 H -0.197 1.197 17 C -0.019 4.019 18 C -0.201 4.201 19 C -0.195 4.195 20 C -0.040 4.040 21 N -0.419 5.419 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.044 0.956 29 H 0.023 0.977 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.228 0.772 39 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -8.258 1.503 7.990 11.588 hybrid contribution 1.020 -0.997 -0.369 1.473 sum -7.237 0.506 7.621 10.522 Atomic orbital electron populations 1.19978 0.87575 1.02483 1.01940 1.21666 0.96183 0.89742 1.06750 1.77024 0.86780 1.22466 1.25745 1.48826 1.04527 1.05214 1.59082 1.21940 0.84303 0.94008 1.03441 1.19253 0.93268 0.80926 1.08642 1.60185 1.06603 1.46486 1.04458 1.19922 0.90026 0.96516 0.86711 1.21283 1.12009 0.99903 1.21139 0.90778 1.24982 0.97856 0.95903 0.95909 1.69952 1.33127 1.25226 1.25442 0.86522 0.80060 0.82320 0.78701 1.20672 1.21381 1.19677 1.21574 0.93934 0.98053 0.88296 1.21911 0.98965 1.02208 0.96999 1.22061 0.99627 0.98150 0.99616 1.16873 0.89748 0.86223 1.11131 1.41461 1.08052 1.02186 1.90155 0.91474 0.91409 0.91345 0.90790 0.90336 0.89846 0.95640 0.97707 0.92891 0.94998 0.92140 0.93214 0.93256 0.89492 0.94713 0.92152 0.77167 0.78697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.76 10.29 36.01 0.37 -0.39 16 2 C 0.02 0.41 7.21 -82.32 -0.59 -0.18 16 3 N -0.29 -5.64 12.57 33.71 0.42 -5.22 16 4 N -0.39 -7.57 4.05 -66.82 -0.27 -7.84 16 5 C 0.11 1.82 9.77 59.85 0.58 2.40 16 6 C 0.20 4.04 3.56 -152.09 -0.54 3.49 16 7 N -0.45 -9.51 4.47 -166.55 -0.74 -10.26 16 8 C 0.19 4.79 4.05 -4.97 -0.02 4.77 16 9 C -0.50 -13.24 6.73 -34.44 -0.23 -13.47 16 10 H 0.07 1.90 5.76 -52.49 -0.30 1.60 16 11 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 12 N -0.90 -25.71 13.29 55.43 0.74 -24.98 16 13 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 C 0.09 1.67 2.44 -67.72 -0.17 1.50 16 18 C -0.14 -2.34 8.81 37.16 0.33 -2.01 16 19 C -0.14 -2.55 7.75 37.16 0.29 -2.26 16 20 C 0.07 1.28 7.05 -83.46 -0.59 0.69 16 21 N -0.87 -13.30 9.23 32.49 0.30 -13.00 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 0.73 7.69 -51.93 -0.40 0.33 16 25 H 0.07 1.34 8.07 -51.93 -0.42 0.92 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.08 1.44 4.91 -51.93 -0.25 1.19 16 28 H 0.03 0.72 7.93 -51.93 -0.41 0.31 16 29 H 0.01 0.13 5.99 -51.93 -0.31 -0.18 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.03 0.62 5.62 -51.93 -0.29 0.33 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.86 6.70 -51.93 -0.35 0.52 16 35 H 0.09 1.85 6.04 -51.93 -0.31 1.53 16 36 H 0.03 0.55 8.08 -51.93 -0.42 0.13 16 37 H 0.06 1.14 7.39 -51.93 -0.38 0.76 16 38 H 0.40 6.32 8.96 -40.82 -0.37 5.95 16 39 H 0.39 4.71 8.35 -40.82 -0.34 4.37 16 LS Contribution 308.10 15.07 4.64 4.64 Total: -1.00 -29.86 308.10 -6.41 -36.27 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -5.81 Total: 8.62 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -0.67 Total: -4.07 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: 0.44 Total: -61.29 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.86 -6.41 -36.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042528872.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.081 kcal (2) G-P(sol) polarization free energy of solvation -29.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds