Wall clock time and date at job start Mon Mar 30 2020 04:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99981 * 2 1 4 4 H 1.48498 * 109.47334 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46950 * 300.00518 * 3 2 1 6 6 H 1.48496 * 109.46878 * 60.00030 * 3 2 1 7 7 C 1.37875 * 120.00277 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00004 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00028 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47344 * 174.61617 * 9 7 2 11 11 C 1.46908 * 111.00290 * 159.01996 * 10 9 7 12 12 C 1.52999 * 109.47165 * 190.00144 * 11 10 9 13 13 C 1.52995 * 109.47005 * 180.02562 * 12 11 10 14 14 N 1.46903 * 109.47247 * 179.97438 * 13 12 11 15 15 C 1.48535 * 110.99948 * 52.60471 * 14 13 12 16 16 C 1.54930 * 103.22887 * 159.72068 * 15 14 13 17 17 C 1.54599 * 102.92127 * 322.58436 * 16 15 14 18 18 C 1.47901 * 110.99816 * 169.99695 * 14 13 12 19 19 C 1.46901 * 111.00017 * 282.97250 * 10 9 7 20 20 C 1.53000 * 117.49753 * 140.65415 * 19 10 9 21 21 C 1.53002 * 60.00274 * 252.51272 * 20 19 10 22 22 H 0.97001 * 120.00478 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47610 * 54.61172 * 9 7 2 24 24 H 1.09000 * 109.47201 * 294.61521 * 9 7 2 25 25 H 1.09001 * 109.46779 * 310.00195 * 11 10 9 26 26 H 1.08995 * 109.46783 * 69.99973 * 11 10 9 27 27 H 1.09001 * 109.47313 * 299.99723 * 12 11 10 28 28 H 1.09000 * 109.47249 * 59.99495 * 12 11 10 29 29 H 1.08999 * 109.47317 * 299.99962 * 13 12 11 30 30 H 1.09000 * 109.47586 * 59.99631 * 13 12 11 31 31 H 1.09000 * 110.66684 * 278.16020 * 15 14 13 32 32 H 1.09010 * 110.66454 * 41.28147 * 15 14 13 33 33 H 1.09007 * 110.72375 * 204.22745 * 16 15 14 34 34 H 1.08994 * 110.72587 * 80.94439 * 16 15 14 35 35 H 1.09003 * 110.31185 * 263.04260 * 17 16 15 36 36 H 1.08998 * 110.39068 * 140.91899 * 17 16 15 37 37 H 1.08993 * 109.92310 * 333.51358 * 18 14 13 38 38 H 1.08998 * 109.91799 * 94.61181 * 18 14 13 39 39 H 1.08997 * 115.55084 * 286.36271 * 19 10 9 40 40 H 1.09002 * 117.50045 * 359.97438 * 20 19 10 41 41 H 1.09005 * 117.49928 * 145.02630 * 20 19 10 42 42 H 1.08998 * 117.49801 * 252.51665 * 21 20 19 43 43 H 1.08997 * 117.51828 * 107.47412 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2004 -3.6125 -0.1320 11 6 1.6087 -4.8681 0.3493 12 6 2.6934 -5.9439 0.4328 13 6 2.0770 -7.2516 0.9334 14 7 3.1183 -8.2848 1.0131 15 6 4.2812 -7.8086 1.8049 16 6 4.9881 -9.1226 2.2222 17 6 3.8051 -10.0790 2.4978 18 6 2.6188 -9.4877 1.7139 19 6 2.6662 -3.7476 -1.5187 20 6 4.1408 -4.0913 -1.7382 21 6 3.6294 -2.6828 -2.0473 22 1 -0.4851 0.8400 0.0004 23 1 0.5543 -2.5158 -0.8397 24 1 0.6984 -2.6004 0.9323 25 1 1.1763 -4.7106 1.3373 26 1 0.8295 -5.1905 -0.3412 27 1 3.1258 -6.1014 -0.5553 28 1 3.4727 -5.6213 1.1232 29 1 1.6442 -7.0946 1.9214 30 1 1.2979 -7.5740 0.2427 31 1 4.9402 -7.1957 1.1899 32 1 3.9481 -7.2552 2.6830 33 1 5.5807 -8.9720 3.1246 34 1 5.6091 -9.5011 1.4103 35 1 3.5793 -10.1040 3.5639 36 1 4.0352 -11.0814 2.1369 37 1 1.8197 -9.2118 2.4019 38 1 2.2503 -10.2136 0.9891 39 1 1.9423 -4.1639 -2.2193 40 1 4.7655 -4.2167 -0.8538 41 1 4.3874 -4.7339 -2.5835 42 1 3.5394 -2.3988 -3.0958 43 1 3.9171 -1.8819 -1.3663 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:44 Heat of formation + Delta-G solvation = 28.364543 kcal Electronic energy + Delta-G solvation = -18946.797036 eV Core-core repulsion = 16220.412711 eV Total energy + Delta-G solvation = -2726.384325 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.06898 -37.70133 -34.31677 -33.21823 -32.08022 -29.73167 -28.87048 -26.63599 -24.08152 -22.21754 -21.89309 -21.54109 -20.88082 -20.12454 -19.31358 -16.49841 -16.11775 -15.87580 -15.16146 -14.84837 -14.57196 -14.23803 -13.92056 -13.55891 -13.08861 -12.62951 -12.62150 -12.26997 -11.90446 -11.67044 -11.51908 -11.27501 -11.23951 -11.10649 -10.88775 -10.79726 -10.71759 -10.63971 -10.52229 -10.29584 -9.86251 -9.47621 -9.11983 -9.05195 -8.42892 -8.36959 -7.24426 -5.97757 -3.97547 3.32851 3.40401 3.44791 3.95759 4.43826 4.53446 4.59709 4.63689 4.80106 4.87700 5.19182 5.29497 5.32518 5.37508 5.44721 5.55301 5.63844 5.70089 5.70506 5.73572 5.79372 5.81530 5.88258 5.89257 6.00694 6.04393 6.19084 6.24678 6.26328 6.40863 6.57998 6.67304 6.75269 6.88680 7.04425 7.06156 7.26318 7.42716 7.90018 8.16669 8.26531 8.59969 9.09614 9.65386 11.12991 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.033479 B = 0.004146 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.136071 B = 6751.713691 C = 6954.380852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.052 3.948 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.495 4.495 8 H 0.067 0.933 9 C 0.194 3.806 10 N -0.510 5.510 11 C 0.062 3.938 12 C -0.111 4.111 13 C 0.048 3.952 14 N -0.518 5.518 15 C 0.034 3.966 16 C -0.125 4.125 17 C -0.131 4.131 18 C 0.034 3.966 19 C 0.028 3.972 20 C -0.183 4.183 21 C -0.156 4.156 22 H 0.259 0.741 23 H -0.003 1.003 24 H 0.023 0.977 25 H 0.065 0.935 26 H 0.021 0.979 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.924 -17.014 2.248 18.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.533 4.533 8 H 0.085 0.915 9 C 0.070 3.930 10 N -0.235 5.235 11 C -0.067 4.067 12 C -0.150 4.150 13 C -0.081 4.081 14 N -0.242 5.242 15 C -0.094 4.094 16 C -0.163 4.163 17 C -0.169 4.169 18 C -0.094 4.094 19 C -0.082 4.082 20 C -0.221 4.221 21 C -0.193 4.193 22 H 0.069 0.931 23 H 0.015 0.985 24 H 0.041 0.959 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.298 -16.892 2.010 18.511 hybrid contribution -0.824 0.996 0.319 1.332 sum 6.474 -15.896 2.329 17.321 Atomic orbital electron populations 1.69966 1.06043 1.26478 1.51711 1.24987 0.94821 0.99195 0.95802 0.86504 0.80141 0.83738 0.77432 1.19635 1.21186 1.21162 1.21261 0.93556 0.89656 1.48864 0.91482 1.19717 0.89848 0.87506 0.95959 1.61897 1.41026 1.03539 1.17043 1.21956 0.94737 0.90526 0.99495 1.21634 0.98796 0.92153 1.02369 1.22326 0.93995 0.91960 0.99802 1.64810 1.07150 1.05137 1.47086 1.23244 0.93148 0.96635 0.96340 1.22494 0.97304 0.95255 1.01260 1.22392 0.95220 0.99484 0.99820 1.22869 0.96610 0.93566 0.96394 1.22039 0.91121 1.03993 0.90997 1.23006 0.97512 0.99467 1.02071 1.23047 1.02697 0.92852 1.00718 0.93125 0.98479 0.95884 0.91684 0.96120 0.90932 0.91501 0.94854 0.90960 0.89668 0.93607 0.91235 0.90848 0.91728 0.91223 0.93920 0.90608 0.91539 0.89077 0.90275 0.90233 0.86859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.49 -13.76 7.98 -34.44 -0.27 -14.03 16 8 H 0.07 1.85 5.84 -52.49 -0.31 1.54 16 9 C 0.19 5.09 4.77 -4.98 -0.02 5.06 16 10 N -0.51 -11.05 4.56 -228.08 -1.04 -12.09 16 11 C 0.06 1.13 4.94 -3.82 -0.02 1.11 16 12 C -0.11 -1.68 4.64 -26.73 -0.12 -1.81 16 13 C 0.05 0.63 5.03 -3.83 -0.02 0.61 16 14 N -0.52 -6.35 5.40 -230.46 -1.24 -7.60 16 15 C 0.03 0.38 5.10 -1.90 -0.01 0.38 16 16 C -0.13 -1.14 7.06 -24.87 -0.18 -1.32 16 17 C -0.13 -1.13 6.93 -25.37 -0.18 -1.31 16 18 C 0.03 0.35 6.69 -2.75 -0.02 0.33 16 19 C 0.03 0.55 4.22 -67.71 -0.29 0.27 16 20 C -0.18 -3.07 9.05 -26.73 -0.24 -3.32 16 21 C -0.16 -3.02 9.50 -26.73 -0.25 -3.28 16 22 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.00 -0.08 7.98 -51.93 -0.41 -0.49 16 24 H 0.02 0.64 7.71 -51.93 -0.40 0.24 16 25 H 0.06 1.20 7.82 -51.93 -0.41 0.79 16 26 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 27 H 0.07 1.14 6.46 -51.93 -0.34 0.80 16 28 H 0.07 1.05 6.80 -51.93 -0.35 0.69 16 29 H 0.03 0.44 7.81 -51.93 -0.41 0.03 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 1.00 7.66 -51.93 -0.40 0.60 16 32 H 0.05 0.54 8.00 -51.92 -0.42 0.12 16 33 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.04 0.43 7.57 -51.93 -0.39 0.04 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.11 2.46 5.69 -51.93 -0.30 2.17 16 LS Contribution 332.67 15.07 5.01 5.01 Total: -1.00 -29.34 332.67 -11.18 -40.52 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.91 Total: -0.40 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -1.72 Total: -15.92 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -1.55 Total: -45.88 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.34 -11.18 -40.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.884 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds