Wall clock time and date at job start Mon Mar 30 2020 04:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47265 * 2 1 4 4 N 1.46901 * 109.46663 * 120.00153 * 2 1 3 5 5 C 1.53002 * 109.46917 * 239.99700 * 2 1 3 6 6 H 1.09002 * 109.46869 * 176.24730 * 5 2 1 7 7 C 1.50696 * 109.47190 * 296.24420 * 5 2 1 8 8 C 1.39873 * 126.04150 * 81.40019 * 7 5 2 9 9 N 1.30837 * 108.20644 * 180.23078 * 8 7 5 10 10 N 1.40083 * 108.20126 * 359.77991 * 9 8 7 11 11 C 1.46505 * 126.03639 * 180.02562 * 10 9 8 12 12 C 1.34948 * 107.92915 * 0.02562 * 10 9 8 13 13 N 1.46903 * 109.47115 * 56.24614 * 5 2 1 14 14 C 1.46902 * 110.99877 * 55.66353 * 13 5 2 15 15 C 1.46904 * 110.99812 * 179.61514 * 13 5 2 16 16 C 1.50702 * 109.46833 * 169.99976 * 15 13 5 17 17 H 1.07995 * 120.00100 * 0.02562 * 16 15 13 18 18 C 1.37871 * 119.99620 * 179.97438 * 16 15 13 19 19 N 1.31512 * 120.00653 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99633 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47051 * 60.00230 * 20 18 16 22 22 H 1.48502 * 109.46743 * 180.02562 * 20 18 16 23 23 H 1.48490 * 109.47324 * 300.00175 * 20 18 16 24 24 H 1.08994 * 109.47578 * 186.30201 * 1 2 3 25 25 H 1.08999 * 109.47164 * 306.30737 * 1 2 3 26 26 H 1.08999 * 109.46949 * 66.30188 * 1 2 3 27 27 H 1.00899 * 111.00028 * 59.99944 * 4 2 1 28 28 H 1.00906 * 110.99702 * 183.95074 * 4 2 1 29 29 H 1.08005 * 125.89642 * 0.02562 * 8 7 5 30 30 H 1.09001 * 109.47403 * 269.97907 * 11 10 9 31 31 H 1.09007 * 109.46637 * 29.97728 * 11 10 9 32 32 H 1.08999 * 109.47112 * 149.97621 * 11 10 9 33 33 H 1.08000 * 126.12848 * 179.97438 * 12 10 9 34 34 H 1.09001 * 109.46980 * 53.79054 * 14 13 5 35 35 H 1.09004 * 109.46960 * 173.79423 * 14 13 5 36 36 H 1.09000 * 109.46811 * 293.79295 * 14 13 5 37 37 H 1.09004 * 109.47252 * 290.00288 * 15 13 5 38 38 H 1.09000 * 109.46767 * 49.99940 * 15 13 5 39 39 H 0.96997 * 120.00564 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0195 -0.6926 1.1995 5 6 2.0399 -0.7213 -1.2492 6 1 3.1279 -0.6634 -1.2835 7 6 1.6150 -2.1664 -1.2035 8 6 0.3607 -2.6673 -1.5670 9 7 0.3701 -3.9632 -1.3869 10 7 1.6343 -4.3291 -0.9071 11 6 2.0697 -5.6877 -0.5741 12 6 2.3803 -3.2091 -0.8058 13 7 1.4776 -0.0832 -2.4470 14 6 1.7857 1.3529 -2.4722 15 6 1.9538 -0.7453 -3.6689 16 6 1.1761 -0.2325 -4.8536 17 1 0.4057 0.5111 -4.7130 18 6 1.4491 -0.7120 -6.1171 19 7 2.3877 -1.6171 -6.2885 20 14 0.4847 -0.0769 -7.5855 21 1 0.6794 1.3901 -7.7087 22 1 0.9662 -0.7461 -8.8207 23 1 -0.9583 -0.3703 -7.3945 24 1 -0.3634 -1.0214 0.1128 25 1 -0.3633 0.6085 0.8281 26 1 -0.3633 0.4130 -0.9410 27 1 1.6960 -1.6480 1.2227 28 1 3.0261 -0.6502 1.2559 29 1 -0.4729 -2.0845 -1.9303 30 1 1.8499 -5.8933 0.4735 31 1 1.5406 -6.4033 -1.2036 32 1 3.1426 -5.7775 -0.7446 33 1 3.4036 -3.1543 -0.4648 34 1 2.8610 1.4958 -2.3655 35 1 1.4546 1.7790 -3.4193 36 1 1.2698 1.8496 -1.6503 37 1 3.0132 -0.5307 -3.8092 38 1 1.8100 -1.8219 -3.5783 39 1 2.5795 -1.9547 -7.1774 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043126735.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:28 Heat of formation + Delta-G solvation = 88.671132 kcal Electronic energy + Delta-G solvation = -19607.488389 eV Core-core repulsion = 16780.178810 eV Total energy + Delta-G solvation = -2827.309579 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.95087 -37.76910 -34.47804 -32.82046 -32.29291 -30.09895 -28.71336 -27.19649 -27.04363 -25.22693 -23.88124 -21.03293 -20.73159 -20.46227 -18.75034 -16.62040 -16.19729 -15.80225 -15.12620 -15.04003 -14.41904 -14.14952 -14.01447 -13.92809 -12.93177 -12.76398 -12.61591 -12.33617 -12.20350 -12.04344 -11.80336 -11.24833 -11.20420 -10.94418 -10.86330 -10.72092 -10.59582 -10.33744 -10.07099 -9.81955 -9.23776 -8.96006 -8.48993 -8.37870 -7.85037 -7.19459 -5.98028 -3.98792 2.25049 2.87775 3.30459 3.35594 3.39665 3.42547 4.45100 4.71965 4.86860 5.03367 5.16866 5.20985 5.31342 5.37648 5.44273 5.57004 5.68095 5.75756 5.98484 6.08944 6.16632 6.20708 6.37162 6.39611 6.53767 6.57103 6.76425 6.83075 7.14046 7.32338 7.35861 7.41230 7.46632 7.67404 7.84665 8.12610 8.19348 8.26755 8.61166 9.09039 9.64895 11.12704 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.019211 B = 0.007683 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.140097 B = 3643.331619 C = 4589.436057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.097 3.903 3 H 0.076 0.924 4 N -0.841 5.841 5 C 0.128 3.872 6 H 0.027 0.973 7 C -0.204 4.204 8 C 0.093 3.907 9 N -0.308 5.308 10 N -0.384 5.384 11 C 0.107 3.893 12 C 0.039 3.961 13 N -0.525 5.525 14 C 0.032 3.968 15 C 0.196 3.804 16 C -0.505 4.505 17 H 0.063 0.937 18 C 0.055 3.945 19 N -0.899 5.899 20 Si 0.895 3.105 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.276 1.276 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.078 0.922 27 H 0.338 0.662 28 H 0.331 0.669 29 H 0.185 0.815 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.162 0.838 34 H 0.007 0.993 35 H 0.076 0.924 36 H 0.050 0.950 37 H -0.017 1.017 38 H 0.035 0.965 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.169 -2.584 13.204 13.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.015 4.015 3 H 0.094 0.906 4 N -0.370 5.370 5 C 0.016 3.984 6 H 0.045 0.955 7 C -0.216 4.216 8 C -0.094 4.094 9 N -0.129 5.129 10 N -0.166 5.166 11 C -0.034 4.034 12 C -0.107 4.107 13 N -0.250 5.250 14 C -0.116 4.116 15 C 0.071 3.929 16 C -0.544 4.544 17 H 0.081 0.919 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.723 3.277 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.202 1.202 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.096 0.904 27 H 0.151 0.849 28 H 0.142 0.858 29 H 0.202 0.798 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.179 0.821 34 H 0.026 0.974 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.001 0.999 38 H 0.053 0.947 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.298 -3.446 13.450 13.888 hybrid contribution 1.682 0.322 -1.743 2.443 sum 1.383 -3.124 11.707 12.196 Atomic orbital electron populations 1.21724 0.93932 1.01628 1.01871 1.21462 0.96683 0.96865 0.86522 0.90555 1.59161 1.15225 1.21707 1.40859 1.20693 0.95211 0.89385 0.93151 0.95475 1.19839 0.95111 0.95305 1.11319 1.23745 0.98383 0.90591 0.96666 1.77349 0.99454 1.15169 1.20889 1.48286 1.09966 1.06403 1.51992 1.21710 1.00455 0.80001 1.01283 1.22114 0.97717 0.86572 1.04272 1.62125 1.58621 1.01948 1.02273 1.22296 0.97076 0.90106 1.02140 1.19699 0.93141 0.95050 0.85006 1.21137 1.19054 1.23240 0.90924 0.91919 1.24972 0.95399 0.95232 0.98971 1.69954 1.31646 1.29680 1.22593 0.86605 0.80407 0.78865 0.81786 1.20326 1.21505 1.20181 0.92975 0.93770 0.90351 0.84905 0.85797 0.79820 0.91378 0.89643 0.90063 0.82061 0.97431 0.90482 0.93144 0.99892 0.94652 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.61 37.16 0.32 -1.66 16 2 C 0.10 1.41 2.72 -67.71 -0.18 1.23 16 3 H 0.08 1.12 6.71 -51.93 -0.35 0.77 16 4 N -0.84 -10.79 9.16 -4.67 -0.04 -10.83 16 5 C 0.13 2.20 1.93 -68.86 -0.13 2.07 16 6 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 7 C -0.20 -3.52 2.37 -105.05 -0.25 -3.77 16 8 C 0.09 1.74 9.12 -17.36 -0.16 1.58 16 9 N -0.31 -5.70 12.58 30.63 0.39 -5.31 16 10 N -0.38 -5.90 4.01 -68.16 -0.27 -6.17 16 11 C 0.11 1.11 11.47 59.85 0.69 1.80 16 12 C 0.04 0.59 10.79 -17.22 -0.19 0.40 16 13 N -0.53 -10.72 3.39 -237.72 -0.81 -11.53 16 14 C 0.03 0.61 8.59 60.07 0.52 1.12 16 15 C 0.20 5.05 4.48 -4.97 -0.02 5.02 16 16 C -0.50 -14.05 8.37 -34.44 -0.29 -14.34 16 17 H 0.06 1.71 7.18 -52.49 -0.38 1.33 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 20 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H 0.05 0.79 6.37 -51.93 -0.33 0.46 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.08 1.25 6.84 -51.93 -0.36 0.90 16 27 H 0.34 4.43 7.36 -39.29 -0.29 4.14 16 28 H 0.33 3.74 9.07 -39.29 -0.36 3.38 16 29 H 0.18 3.50 8.01 -52.48 -0.42 3.08 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 34 H 0.01 0.13 8.12 -51.93 -0.42 -0.29 16 35 H 0.08 1.57 6.64 -51.93 -0.34 1.23 16 36 H 0.05 0.80 6.25 -51.93 -0.32 0.48 16 37 H -0.02 -0.47 8.12 -51.93 -0.42 -0.90 16 38 H 0.04 1.00 6.33 -51.93 -0.33 0.67 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 311.28 15.07 4.69 4.69 Total: -1.00 -31.75 311.28 -6.12 -37.87 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.99 Total: 5.86 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 0.20 Total: -5.06 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 0.00 Total: -60.19 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.75 -6.12 -37.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043126735.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.540 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds