Wall clock time and date at job start Mon Mar 30 2020 04:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47265 * 2 1 4 4 N 1.46901 * 109.46663 * 120.00153 * 2 1 3 5 5 C 1.53002 * 109.46917 * 239.99700 * 2 1 3 6 6 H 1.09002 * 109.46869 * 176.24730 * 5 2 1 7 7 C 1.50696 * 109.47190 * 296.24420 * 5 2 1 8 8 C 1.39873 * 126.04150 * 81.40019 * 7 5 2 9 9 N 1.30837 * 108.20644 * 180.23078 * 8 7 5 10 10 N 1.40083 * 108.20126 * 359.77991 * 9 8 7 11 11 C 1.46505 * 126.03639 * 180.02562 * 10 9 8 12 12 C 1.34948 * 107.92915 * 0.02562 * 10 9 8 13 13 N 1.46903 * 109.47115 * 56.24614 * 5 2 1 14 14 C 1.46902 * 110.99877 * 55.66353 * 13 5 2 15 15 C 1.46904 * 110.99812 * 179.61514 * 13 5 2 16 16 C 1.50702 * 109.46833 * 169.99976 * 15 13 5 17 17 H 1.07995 * 120.00100 * 0.02562 * 16 15 13 18 18 C 1.37871 * 119.99620 * 179.97438 * 16 15 13 19 19 N 1.31512 * 120.00653 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99633 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47051 * 60.00230 * 20 18 16 22 22 H 1.48502 * 109.46743 * 180.02562 * 20 18 16 23 23 H 1.48490 * 109.47324 * 300.00175 * 20 18 16 24 24 H 1.08994 * 109.47578 * 186.30201 * 1 2 3 25 25 H 1.08999 * 109.47164 * 306.30737 * 1 2 3 26 26 H 1.08999 * 109.46949 * 66.30188 * 1 2 3 27 27 H 1.00899 * 111.00028 * 59.99944 * 4 2 1 28 28 H 1.00906 * 110.99702 * 183.95074 * 4 2 1 29 29 H 1.08005 * 125.89642 * 0.02562 * 8 7 5 30 30 H 1.09001 * 109.47403 * 269.97907 * 11 10 9 31 31 H 1.09007 * 109.46637 * 29.97728 * 11 10 9 32 32 H 1.08999 * 109.47112 * 149.97621 * 11 10 9 33 33 H 1.08000 * 126.12848 * 179.97438 * 12 10 9 34 34 H 1.09001 * 109.46980 * 53.79054 * 14 13 5 35 35 H 1.09004 * 109.46960 * 173.79423 * 14 13 5 36 36 H 1.09000 * 109.46811 * 293.79295 * 14 13 5 37 37 H 1.09004 * 109.47252 * 290.00288 * 15 13 5 38 38 H 1.09000 * 109.46767 * 49.99940 * 15 13 5 39 39 H 0.96997 * 120.00564 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0195 -0.6926 1.1995 5 6 2.0399 -0.7213 -1.2492 6 1 3.1279 -0.6634 -1.2835 7 6 1.6150 -2.1664 -1.2035 8 6 0.3607 -2.6673 -1.5670 9 7 0.3701 -3.9632 -1.3869 10 7 1.6343 -4.3291 -0.9071 11 6 2.0697 -5.6877 -0.5741 12 6 2.3803 -3.2091 -0.8058 13 7 1.4776 -0.0832 -2.4470 14 6 1.7857 1.3529 -2.4722 15 6 1.9538 -0.7453 -3.6689 16 6 1.1761 -0.2325 -4.8536 17 1 0.4057 0.5111 -4.7130 18 6 1.4491 -0.7120 -6.1171 19 7 2.3877 -1.6171 -6.2885 20 14 0.4847 -0.0769 -7.5855 21 1 0.6794 1.3901 -7.7087 22 1 0.9662 -0.7461 -8.8207 23 1 -0.9583 -0.3703 -7.3945 24 1 -0.3634 -1.0214 0.1128 25 1 -0.3633 0.6085 0.8281 26 1 -0.3633 0.4130 -0.9410 27 1 1.6960 -1.6480 1.2227 28 1 3.0261 -0.6502 1.2559 29 1 -0.4729 -2.0845 -1.9303 30 1 1.8499 -5.8933 0.4735 31 1 1.5406 -6.4033 -1.2036 32 1 3.1426 -5.7775 -0.7446 33 1 3.4036 -3.1543 -0.4648 34 1 2.8610 1.4958 -2.3655 35 1 1.4546 1.7790 -3.4193 36 1 1.2698 1.8496 -1.6503 37 1 3.0132 -0.5307 -3.8092 38 1 1.8100 -1.8219 -3.5783 39 1 2.5795 -1.9547 -7.1774 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043126735.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:28 Heat of formation + Delta-G solvation = 64.852462 kcal Electronic energy + Delta-G solvation = -19608.521244 eV Core-core repulsion = 16780.178810 eV Total energy + Delta-G solvation = -2828.342434 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.23375 -39.19725 -36.04231 -34.32311 -33.94310 -31.41389 -30.05504 -28.89770 -28.36094 -26.53364 -25.65663 -22.74547 -22.01680 -21.75684 -20.08427 -18.53684 -17.62265 -16.99751 -16.74183 -16.29115 -16.10471 -15.56583 -15.46760 -15.19093 -14.36579 -14.29834 -13.93941 -13.69438 -13.49866 -13.39703 -13.29600 -12.85418 -12.75625 -12.54492 -12.48105 -12.25734 -12.13713 -11.96903 -11.78105 -11.31426 -11.23436 -10.58169 -10.23249 -9.63293 -9.12578 -8.89729 -8.16747 -6.25337 1.00569 1.40218 1.43547 1.50650 1.79000 1.93257 2.41473 3.16035 3.35089 3.71815 3.90388 3.99175 4.14584 4.33069 4.38616 4.46250 4.47611 4.61287 4.69054 4.71750 4.78964 4.86117 4.99319 5.14926 5.17517 5.23734 5.30032 5.36519 5.44940 5.60077 5.69763 5.77120 6.11812 6.23070 6.29661 6.44169 6.68131 6.74123 6.86026 6.93136 7.43898 8.93670 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.019211 B = 0.007683 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.140097 B = 3643.331619 C = 4589.436057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.108 3.892 3 H 0.082 0.918 4 N -0.832 5.832 5 C 0.132 3.868 6 H 0.022 0.978 7 C -0.226 4.226 8 C 0.074 3.926 9 N -0.338 5.338 10 N -0.379 5.379 11 C 0.095 3.905 12 C 0.050 3.950 13 N -0.526 5.526 14 C 0.035 3.965 15 C 0.220 3.780 16 C -0.517 4.517 17 H 0.065 0.935 18 C 0.000 4.000 19 N -0.936 5.936 20 Si 0.963 3.037 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.270 1.270 24 H 0.043 0.957 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.339 0.661 28 H 0.343 0.657 29 H 0.168 0.832 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.198 0.802 34 H 0.009 0.991 35 H 0.056 0.944 36 H 0.083 0.917 37 H -0.052 1.052 38 H 0.006 0.994 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.461 -2.360 14.437 14.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.004 4.004 3 H 0.100 0.900 4 N -0.361 5.361 5 C 0.020 3.980 6 H 0.039 0.961 7 C -0.238 4.238 8 C -0.111 4.111 9 N -0.161 5.161 10 N -0.161 5.161 11 C -0.044 4.044 12 C -0.097 4.097 13 N -0.250 5.250 14 C -0.113 4.113 15 C 0.093 3.907 16 C -0.555 4.555 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.577 5.577 20 Si 0.788 3.212 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.196 1.196 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.152 0.848 28 H 0.155 0.845 29 H 0.185 0.815 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.127 0.873 33 H 0.215 0.785 34 H 0.028 0.972 35 H 0.075 0.925 36 H 0.101 0.899 37 H -0.035 1.035 38 H 0.024 0.976 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.014 -3.221 14.713 15.062 hybrid contribution 1.640 0.170 -2.034 2.618 sum 1.626 -3.051 12.680 13.143 Atomic orbital electron populations 1.21638 0.94087 1.01262 1.01520 1.21332 0.96432 0.96880 0.85771 0.89993 1.59131 1.16204 1.21653 1.39131 1.20791 0.94703 0.89836 0.92662 0.96055 1.19899 0.95067 0.95863 1.12923 1.23596 0.98821 0.90968 0.97698 1.77253 1.01621 1.15071 1.22133 1.48683 1.08869 1.08161 1.50415 1.22146 1.02037 0.77409 1.02841 1.22613 0.98700 0.85842 1.02591 1.62023 1.58723 1.02725 1.01551 1.22301 0.97576 0.89057 1.02380 1.19225 0.90745 0.93643 0.87044 1.21503 1.19014 1.23033 0.91967 0.91721 1.25869 0.96360 0.95399 1.02106 1.70093 1.33337 1.31092 1.23223 0.85526 0.78935 0.78770 0.77935 1.19009 1.21258 1.19559 0.93783 0.92429 0.91882 0.84820 0.84483 0.81452 0.88734 0.89839 0.87341 0.78532 0.97205 0.92525 0.89852 1.03464 0.97572 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 8.61 71.98 0.62 -3.01 16 2 C 0.11 2.98 2.72 44.92 0.12 3.11 16 3 H 0.08 2.20 6.71 -2.39 -0.02 2.18 16 4 N -0.83 -19.32 9.16 -168.68 -1.55 -20.86 16 5 C 0.13 4.49 1.93 44.17 0.09 4.57 16 6 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 7 C -0.23 -7.74 2.37 -20.14 -0.05 -7.78 16 8 C 0.07 2.86 9.12 85.24 0.78 3.64 16 9 N -0.34 -12.64 12.58 -57.02 -0.72 -13.36 16 10 N -0.38 -11.14 4.01 -369.54 -1.48 -12.62 16 11 C 0.10 1.74 11.47 127.77 1.47 3.20 16 12 C 0.05 1.43 10.79 83.54 0.90 2.33 16 13 N -0.53 -21.73 3.39 -906.00 -3.07 -24.80 16 14 C 0.04 1.30 8.59 127.69 1.10 2.39 16 15 C 0.22 11.68 4.48 85.56 0.38 12.06 16 16 C -0.52 -29.35 8.37 25.60 0.21 -29.14 16 17 H 0.06 3.57 7.18 -2.91 -0.02 3.55 16 18 C 0.00 0.00 5.46 84.65 0.46 0.47 16 19 N -0.94 -57.63 13.29 21.44 0.28 -57.35 16 20 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 24 H 0.04 1.32 6.37 -2.39 -0.02 1.31 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 1.98 6.84 -2.39 -0.02 1.97 16 27 H 0.34 8.10 7.36 -89.70 -0.66 7.44 16 28 H 0.34 6.75 9.07 -89.69 -0.81 5.94 16 29 H 0.17 6.76 8.01 -2.91 -0.02 6.74 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.20 4.09 8.06 -2.91 -0.02 4.07 16 34 H 0.01 0.34 8.12 -2.39 -0.02 0.33 16 35 H 0.06 2.31 6.64 -2.39 -0.02 2.30 16 36 H 0.08 2.52 6.25 -2.39 -0.01 2.51 16 37 H -0.05 -3.09 8.12 -2.39 -0.02 -3.11 16 38 H 0.01 0.36 6.33 -2.39 -0.02 0.35 16 39 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -70.06 311.28 1.16 -68.90 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -0.42 Total: 21.08 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 6.08 Total: -8.16 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -6.53 Total: -128.99 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -70.06 1.16 -68.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043126735.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.751 kcal (2) G-P(sol) polarization free energy of solvation -70.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds