Wall clock time and date at job start Mon Mar 30 2020 04:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46822 * 2 1 4 4 N 1.46902 * 109.47294 * 239.99823 * 2 1 3 5 5 C 1.53000 * 109.46920 * 120.00185 * 2 1 3 6 6 H 1.09000 * 109.47468 * 58.66192 * 5 2 1 7 7 C 1.50698 * 109.47042 * 298.66642 * 5 2 1 8 8 C 1.39878 * 126.04009 * 272.87849 * 7 5 2 9 9 N 1.30838 * 108.20142 * 179.71790 * 8 7 5 10 10 N 1.40084 * 108.20511 * 0.24129 * 9 8 7 11 11 C 1.46500 * 126.03442 * 180.02562 * 10 9 8 12 12 C 1.34946 * 107.92600 * 359.97438 * 10 9 8 13 13 N 1.46900 * 109.47098 * 178.66939 * 5 2 1 14 14 C 1.46895 * 110.99986 * 38.61792 * 13 5 2 15 15 C 1.46899 * 110.99542 * 274.66542 * 13 5 2 16 16 C 1.50705 * 109.47010 * 197.51820 * 15 13 5 17 17 H 1.08005 * 119.99494 * 0.02562 * 16 15 13 18 18 C 1.37872 * 120.00036 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00510 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99773 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47225 * 60.00401 * 20 18 16 22 22 H 1.48502 * 109.46928 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47196 * 300.00223 * 20 18 16 24 24 H 1.08999 * 109.47534 * 300.00099 * 1 2 3 25 25 H 1.09002 * 109.47133 * 60.00574 * 1 2 3 26 26 H 1.09004 * 109.47329 * 179.97438 * 1 2 3 27 27 H 1.00901 * 111.00139 * 167.39917 * 4 2 1 28 28 H 1.00902 * 110.99895 * 291.35537 * 4 2 1 29 29 H 1.08003 * 125.89868 * 359.97116 * 8 7 5 30 30 H 1.09004 * 109.47337 * 89.96957 * 11 10 9 31 31 H 1.08998 * 109.47418 * 209.97150 * 11 10 9 32 32 H 1.09003 * 109.47359 * 329.97061 * 11 10 9 33 33 H 1.08001 * 126.12208 * 180.02562 * 12 10 9 34 34 H 1.09001 * 109.47217 * 51.75014 * 14 13 5 35 35 H 1.09004 * 109.47299 * 171.75355 * 14 13 5 36 36 H 1.08997 * 109.47279 * 291.75087 * 14 13 5 37 37 H 1.08994 * 109.47597 * 317.51695 * 15 13 5 38 38 H 1.09002 * 109.47254 * 77.52461 * 15 13 5 39 39 H 0.96999 * 120.00766 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0399 -0.7213 1.2492 6 1 1.6572 -1.7418 1.2613 7 6 1.5648 0.0079 2.4795 8 6 2.2133 1.0787 3.1034 9 7 1.4957 1.4470 4.1336 10 7 0.3690 0.6174 4.2011 11 6 -0.6950 0.6891 5.2055 12 6 0.4363 -0.2588 3.1769 13 7 3.5086 -0.7492 1.2333 14 6 4.0536 0.5137 0.7177 15 6 4.0049 -1.8930 0.4564 16 6 5.4491 -2.1473 0.8037 17 1 5.9482 -1.5221 1.5293 18 6 6.1329 -3.1788 0.1959 19 7 5.5251 -3.9404 -0.6873 20 14 7.9229 -3.4945 0.6269 21 1 8.0376 -3.7934 2.0769 22 1 8.4247 -4.6506 -0.1586 23 1 8.7296 -2.2900 0.3044 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.0070 -0.5318 -1.3320 28 1 1.8168 -1.6799 -1.1550 29 1 3.1435 1.5270 2.7868 30 1 -1.4777 1.3636 4.8582 31 1 -1.1148 -0.3046 5.3618 32 1 -0.2844 1.0617 6.1440 33 1 -0.2837 -1.0317 2.9519 34 1 3.6115 1.3489 1.2609 35 1 5.1352 0.5245 0.8522 36 1 3.8184 0.6048 -0.3427 37 1 3.4132 -2.7772 0.6930 38 1 3.9204 -1.6733 -0.6079 39 1 6.0062 -4.6659 -1.1152 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043126736.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:31 Heat of formation + Delta-G solvation = 101.376746 kcal Electronic energy + Delta-G solvation = -19414.707971 eV Core-core repulsion = 16587.949349 eV Total energy + Delta-G solvation = -2826.758622 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.05499 -38.32860 -33.79087 -33.13038 -32.20300 -30.75275 -28.42824 -27.62346 -26.82200 -25.80191 -23.68356 -20.97545 -20.88163 -20.48168 -19.15095 -16.67310 -16.37907 -15.74348 -15.41255 -14.89430 -14.73327 -14.34331 -14.00108 -13.51733 -13.22107 -12.86081 -12.64190 -12.46508 -12.33781 -11.95510 -11.76754 -11.57291 -11.30987 -11.09384 -10.94421 -10.63638 -10.48059 -10.43597 -10.17173 -9.83876 -9.28397 -9.13775 -8.74941 -8.43123 -7.95650 -6.95592 -6.02562 -4.03837 2.12426 2.72545 3.15392 3.34110 3.38138 3.41563 4.41990 4.59859 4.94494 5.01177 5.08079 5.11126 5.28621 5.30826 5.33062 5.37835 5.64721 5.71279 5.83108 5.88845 6.03762 6.07014 6.09396 6.29137 6.37178 6.45443 6.61009 6.71984 6.95963 7.17059 7.19206 7.23717 7.66936 7.81019 7.93828 7.97100 8.09163 8.18244 8.53914 9.03211 9.60465 11.06991 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.025217 B = 0.006007 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.078451 B = 4660.160513 C = 5250.546955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.065 3.935 3 H 0.077 0.923 4 N -0.849 5.849 5 C 0.125 3.875 6 H 0.076 0.924 7 C -0.194 4.194 8 C 0.065 3.935 9 N -0.310 5.310 10 N -0.385 5.385 11 C 0.107 3.893 12 C 0.045 3.955 13 N -0.530 5.530 14 C 0.025 3.975 15 C 0.187 3.813 16 C -0.505 4.505 17 H 0.062 0.938 18 C 0.056 3.944 19 N -0.899 5.899 20 Si 0.897 3.103 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.277 1.277 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.350 0.650 28 H 0.341 0.659 29 H 0.184 0.816 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.167 0.833 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.020 0.980 37 H 0.025 0.975 38 H 0.002 0.998 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.259 7.699 5.816 15.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.048 4.048 3 H 0.095 0.905 4 N -0.383 5.383 5 C 0.012 3.988 6 H 0.094 0.906 7 C -0.206 4.206 8 C -0.120 4.120 9 N -0.131 5.131 10 N -0.169 5.169 11 C -0.035 4.035 12 C -0.101 4.101 13 N -0.253 5.253 14 C -0.123 4.123 15 C 0.062 3.938 16 C -0.544 4.544 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.725 3.275 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.168 0.832 28 H 0.154 0.846 29 H 0.201 0.799 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.184 0.816 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.039 0.961 37 H 0.043 0.957 38 H 0.020 0.980 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.763 8.757 6.851 16.927 hybrid contribution 1.354 -1.426 -0.565 2.046 sum -11.409 7.331 6.286 14.947 Atomic orbital electron populations 1.21741 0.95316 1.01291 1.01060 1.22022 0.95345 0.98683 0.88755 0.90501 1.59221 1.23751 1.16607 1.38712 1.20804 0.90085 0.97597 0.90286 0.90601 1.20008 0.96648 1.01869 1.02087 1.23957 0.99212 0.96185 0.92681 1.77307 0.96737 1.16942 1.22124 1.48331 1.19107 1.26296 1.23123 1.21724 0.87748 1.03066 0.90978 1.22148 1.00296 0.96892 0.90752 1.62158 1.03571 1.03898 1.55646 1.22508 1.01226 0.91931 0.96673 1.19999 0.95985 0.86974 0.90862 1.21121 0.95591 1.14401 1.23285 0.92007 1.24960 0.98403 0.95990 0.95171 1.69925 1.36854 1.19306 1.27762 0.86575 0.84886 0.77598 0.78418 1.20298 1.21431 1.20303 0.92675 0.92782 0.93226 0.83150 0.84591 0.79891 0.91328 0.89906 0.89714 0.81587 0.92996 0.91117 0.96134 0.95658 0.98027 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.17 37.16 0.34 -1.48 16 2 C 0.07 1.02 2.32 -67.71 -0.16 0.87 16 3 H 0.08 1.24 6.52 -51.93 -0.34 0.90 16 4 N -0.85 -14.48 8.40 -4.67 -0.04 -14.52 16 5 C 0.12 2.14 2.00 -68.87 -0.14 2.00 16 6 H 0.08 1.38 7.52 -51.93 -0.39 0.99 16 7 C -0.19 -3.08 4.41 -105.05 -0.46 -3.55 16 8 C 0.07 1.07 10.78 -17.36 -0.19 0.89 16 9 N -0.31 -5.03 12.58 30.63 0.39 -4.64 16 10 N -0.39 -5.20 4.01 -68.16 -0.27 -5.47 16 11 C 0.11 0.90 11.47 59.85 0.69 1.59 16 12 C 0.04 0.61 10.17 -17.22 -0.18 0.43 16 13 N -0.53 -10.72 4.38 -237.73 -1.04 -11.76 16 14 C 0.03 0.46 7.65 60.06 0.46 0.92 16 15 C 0.19 4.53 3.92 -4.97 -0.02 4.51 16 16 C -0.51 -13.80 8.69 -34.44 -0.30 -14.10 16 17 H 0.06 1.70 7.60 -52.48 -0.40 1.30 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -25.91 13.29 55.43 0.74 -25.17 16 20 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 H 0.05 0.70 6.44 -51.93 -0.33 0.37 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.35 6.57 4.59 -39.29 -0.18 6.39 16 28 H 0.34 6.01 8.47 -39.29 -0.33 5.68 16 29 H 0.18 2.88 5.65 -52.48 -0.30 2.59 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.05 0.82 4.71 -51.93 -0.24 0.57 16 35 H 0.07 1.38 7.51 -51.93 -0.39 0.99 16 36 H 0.02 0.37 5.05 -51.93 -0.26 0.11 16 37 H 0.03 0.67 7.60 -51.93 -0.39 0.28 16 38 H 0.00 0.06 5.14 -51.93 -0.27 -0.21 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 303.42 15.07 4.57 4.57 Total: -1.00 -30.50 303.42 -6.23 -36.73 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.50 Total: 10.23 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -0.05 Total: -6.46 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: -0.23 Total: -61.56 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.50 -6.23 -36.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043126736.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.105 kcal (2) G-P(sol) polarization free energy of solvation -30.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds