Wall clock time and date at job start Mon Mar 30 2020 04:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.46942 * 2 1 4 4 N 1.46901 * 109.47065 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.47012 * 240.00032 * 2 1 3 6 6 H 1.09003 * 109.46745 * 61.26723 * 5 2 1 7 7 C 1.50703 * 109.46936 * 301.26550 * 5 2 1 8 8 C 1.39864 * 126.03828 * 279.68964 * 7 5 2 9 9 N 1.30837 * 108.19928 * 179.82002 * 8 7 5 10 10 N 1.40092 * 108.20897 * 0.44295 * 9 8 7 11 11 C 1.46494 * 126.04090 * 179.73970 * 10 9 8 12 12 C 1.34954 * 107.92085 * 359.71402 * 10 9 8 13 13 N 1.46897 * 109.47061 * 181.26847 * 5 2 1 14 14 C 1.46893 * 111.00210 * 174.89810 * 13 5 2 15 15 C 1.46909 * 110.99944 * 298.84746 * 13 5 2 16 16 C 1.50700 * 109.47192 * 167.24675 * 15 13 5 17 17 H 1.07998 * 119.99568 * 0.02562 * 16 15 13 18 18 C 1.37870 * 120.00017 * 180.02562 * 16 15 13 19 19 N 1.31523 * 119.99969 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00213 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47652 * 89.99597 * 20 18 16 22 22 H 1.48498 * 109.47258 * 209.99852 * 20 18 16 23 23 H 1.48507 * 109.46833 * 329.99527 * 20 18 16 24 24 H 1.09003 * 109.47047 * 185.87809 * 1 2 3 25 25 H 1.09001 * 109.47275 * 305.87311 * 1 2 3 26 26 H 1.08997 * 109.46975 * 65.87172 * 1 2 3 27 27 H 1.00899 * 110.99722 * 60.00292 * 4 2 1 28 28 H 1.00900 * 110.99712 * 183.95489 * 4 2 1 29 29 H 1.07998 * 125.89984 * 0.02562 * 8 7 5 30 30 H 1.08997 * 109.47206 * 269.97368 * 11 10 9 31 31 H 1.09002 * 109.47379 * 29.97402 * 11 10 9 32 32 H 1.08998 * 109.46913 * 149.97197 * 11 10 9 33 33 H 1.07993 * 126.12641 * 180.02562 * 12 10 9 34 34 H 1.08999 * 109.47612 * 59.99298 * 14 13 5 35 35 H 1.09005 * 109.47286 * 179.97438 * 14 13 5 36 36 H 1.09003 * 109.46765 * 299.99707 * 14 13 5 37 37 H 1.08999 * 109.46908 * 287.25378 * 15 13 5 38 38 H 1.09008 * 109.46991 * 47.24812 * 15 13 5 39 39 H 0.97004 * 119.99586 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0400 -0.7213 -1.2493 6 1 1.6953 -0.1944 -2.1391 7 6 1.5122 -2.1327 -1.2650 8 6 2.0316 -3.2136 -0.5451 9 7 1.3068 -4.2693 -0.8133 10 7 0.3080 -3.8953 -1.7217 11 6 -0.7163 -4.7767 -2.2876 12 6 0.4556 -2.5796 -1.9828 13 7 3.5087 -0.7479 -1.2341 14 6 4.0326 -1.5377 -2.3563 15 6 4.0601 0.6138 -1.2459 16 6 5.5298 0.5635 -0.9167 17 1 6.0066 -0.3851 -0.7189 18 6 6.2656 1.7284 -0.8681 19 7 5.6849 2.8835 -1.1095 20 14 8.0875 1.6661 -0.4607 21 1 8.8702 1.5170 -1.7138 22 1 8.4848 2.9222 0.2245 23 1 8.3560 0.5094 0.4312 24 1 -0.3633 -1.0223 0.1052 25 1 -0.3634 0.6022 0.8327 26 1 -0.3633 0.4201 -0.9379 27 1 1.6962 -1.6480 1.2227 28 1 3.0262 -0.6501 1.2558 29 1 2.8818 -3.1814 0.1201 30 1 -0.3436 -5.2210 -3.2105 31 1 -0.9514 -5.5659 -1.5735 32 1 -1.6158 -4.1989 -2.4998 33 1 -0.1594 -1.9890 -2.6455 34 1 3.7007 -1.0975 -3.2967 35 1 5.1221 -1.5405 -2.3214 36 1 3.6637 -2.5608 -2.2840 37 1 3.9238 1.0523 -2.2345 38 1 3.5422 1.2220 -0.5042 39 1 6.2027 3.7031 -1.0756 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043126738.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:34 Heat of formation + Delta-G solvation = 86.976233 kcal Electronic energy + Delta-G solvation = -19459.097231 eV Core-core repulsion = 16631.714156 eV Total energy + Delta-G solvation = -2827.383075 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.18145 -37.72365 -34.24696 -33.04432 -32.33469 -30.35830 -28.32471 -27.66101 -26.68259 -25.89359 -23.42785 -21.29275 -20.87717 -20.50875 -18.84816 -16.71664 -16.15274 -15.68101 -15.17014 -14.92399 -14.48583 -14.28107 -14.13387 -13.54793 -13.21893 -12.90988 -12.73365 -12.56350 -12.26226 -12.00090 -11.85309 -11.44606 -11.40428 -11.00166 -10.82154 -10.72435 -10.58382 -10.48776 -10.10723 -9.68404 -9.24054 -9.19055 -8.39606 -8.33393 -7.83372 -7.23211 -6.00093 -4.00882 2.02073 2.63196 3.03666 3.33952 3.40617 3.44755 4.43615 4.53892 4.83393 4.99771 5.01786 5.22544 5.26960 5.33628 5.36116 5.54075 5.71396 5.82927 5.86523 5.96524 6.08369 6.19226 6.22212 6.36858 6.41133 6.51974 6.65480 6.79074 6.87014 7.11696 7.32418 7.36885 7.79094 7.87112 7.90201 8.12745 8.21694 8.24119 8.57386 9.06693 9.63286 11.10609 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.031796 B = 0.005744 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.405114 B = 4873.701497 C = 5247.329273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.100 3.900 3 H 0.088 0.912 4 N -0.835 5.835 5 C 0.122 3.878 6 H 0.033 0.967 7 C -0.204 4.204 8 C 0.071 3.929 9 N -0.306 5.306 10 N -0.384 5.384 11 C 0.106 3.894 12 C 0.045 3.955 13 N -0.531 5.531 14 C 0.043 3.957 15 C 0.188 3.812 16 C -0.504 4.504 17 H 0.062 0.938 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.896 3.104 21 H -0.283 1.283 22 H -0.287 1.287 23 H -0.273 1.273 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.327 0.673 28 H 0.356 0.644 29 H 0.184 0.816 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.166 0.834 34 H 0.006 0.994 35 H 0.071 0.929 36 H 0.046 0.954 37 H -0.012 1.012 38 H 0.038 0.962 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.673 -10.734 -2.371 16.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.013 4.013 3 H 0.106 0.894 4 N -0.365 5.365 5 C 0.010 3.990 6 H 0.051 0.949 7 C -0.216 4.216 8 C -0.115 4.115 9 N -0.127 5.127 10 N -0.167 5.167 11 C -0.036 4.036 12 C -0.100 4.100 13 N -0.256 5.256 14 C -0.106 4.106 15 C 0.064 3.936 16 C -0.543 4.543 17 H 0.081 0.919 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.724 3.276 21 H -0.209 1.209 22 H -0.213 1.213 23 H -0.198 1.198 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.140 0.860 28 H 0.171 0.829 29 H 0.200 0.800 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.183 0.817 34 H 0.025 0.975 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.006 0.994 38 H 0.056 0.944 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.191 -11.554 -1.370 17.589 hybrid contribution 1.327 0.738 -1.683 2.267 sum -11.863 -10.816 -3.052 16.341 Atomic orbital electron populations 1.21761 0.95655 1.01245 1.00870 1.21410 0.93788 0.98470 0.87647 0.89423 1.59086 1.18121 1.20152 1.39168 1.20714 0.90228 0.89803 0.98255 0.94936 1.20027 0.99710 0.97369 1.04492 1.23765 0.98808 0.89546 0.99410 1.77342 1.01814 1.23779 1.09783 1.48347 1.25428 1.07142 1.35779 1.21736 0.88577 0.94317 0.98925 1.22205 1.00415 0.85467 1.01921 1.62060 1.02850 1.17810 1.42850 1.22160 1.01078 0.96321 0.91060 1.19833 0.95316 0.82664 0.95825 1.21125 0.93381 0.93065 1.46697 0.91933 1.24965 0.98547 0.95415 0.95596 1.69959 1.36126 0.97748 1.49963 0.86526 0.85229 0.77450 0.78363 1.20943 1.21336 1.19768 0.93246 0.92517 0.93153 0.86038 0.82928 0.79958 0.91231 0.89631 0.89910 0.81651 0.97543 0.91042 0.93520 0.99406 0.94424 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.00 37.16 0.33 -1.60 16 2 C 0.10 1.69 2.91 -67.71 -0.20 1.49 16 3 H 0.09 1.73 6.24 -51.93 -0.32 1.40 16 4 N -0.84 -14.13 9.12 -4.66 -0.04 -14.17 16 5 C 0.12 2.11 1.83 -68.86 -0.13 1.98 16 6 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 7 C -0.20 -3.08 2.45 -105.05 -0.26 -3.34 16 8 C 0.07 1.10 8.70 -17.37 -0.15 0.95 16 9 N -0.31 -4.67 12.58 30.62 0.39 -4.28 16 10 N -0.38 -4.86 4.01 -68.17 -0.27 -5.13 16 11 C 0.11 0.83 11.47 59.84 0.69 1.52 16 12 C 0.05 0.59 10.85 -17.22 -0.19 0.40 16 13 N -0.53 -10.73 3.74 -237.72 -0.89 -11.62 16 14 C 0.04 0.83 8.99 60.06 0.54 1.37 16 15 C 0.19 4.69 4.58 -4.97 -0.02 4.67 16 16 C -0.50 -13.72 8.49 -34.44 -0.29 -14.01 16 17 H 0.06 1.69 7.31 -52.49 -0.38 1.31 16 18 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 20 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H 0.05 0.68 7.07 -51.93 -0.37 0.32 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.33 5.18 6.56 -39.29 -0.26 4.92 16 28 H 0.36 6.67 8.49 -39.29 -0.33 6.33 16 29 H 0.18 2.81 7.95 -52.49 -0.42 2.40 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.17 1.70 8.06 -52.49 -0.42 1.27 16 34 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.07 1.49 6.96 -51.93 -0.36 1.13 16 36 H 0.05 0.84 6.08 -51.93 -0.32 0.52 16 37 H -0.01 -0.33 8.09 -51.93 -0.42 -0.75 16 38 H 0.04 0.99 5.80 -51.92 -0.30 0.69 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 312.20 15.07 4.70 4.70 Total: -1.00 -30.21 312.20 -6.17 -36.38 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.00 Total: 8.35 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 0.23 Total: -5.11 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -0.08 Total: -60.81 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.21 -6.17 -36.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043126738.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.353 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds