Wall clock time and date at job start Mon Mar 30 2020 04:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.46942 * 2 1 4 4 N 1.46901 * 109.47065 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.47012 * 240.00032 * 2 1 3 6 6 H 1.09003 * 109.46745 * 61.26723 * 5 2 1 7 7 C 1.50703 * 109.46936 * 301.26550 * 5 2 1 8 8 C 1.39864 * 126.03828 * 279.68964 * 7 5 2 9 9 N 1.30837 * 108.19928 * 179.82002 * 8 7 5 10 10 N 1.40092 * 108.20897 * 0.44295 * 9 8 7 11 11 C 1.46494 * 126.04090 * 179.73970 * 10 9 8 12 12 C 1.34954 * 107.92085 * 359.71402 * 10 9 8 13 13 N 1.46897 * 109.47061 * 181.26847 * 5 2 1 14 14 C 1.46893 * 111.00210 * 174.89810 * 13 5 2 15 15 C 1.46909 * 110.99944 * 298.84746 * 13 5 2 16 16 C 1.50700 * 109.47192 * 167.24675 * 15 13 5 17 17 H 1.07998 * 119.99568 * 0.02562 * 16 15 13 18 18 C 1.37870 * 120.00017 * 180.02562 * 16 15 13 19 19 N 1.31523 * 119.99969 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00213 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47652 * 89.99597 * 20 18 16 22 22 H 1.48498 * 109.47258 * 209.99852 * 20 18 16 23 23 H 1.48507 * 109.46833 * 329.99527 * 20 18 16 24 24 H 1.09003 * 109.47047 * 185.87809 * 1 2 3 25 25 H 1.09001 * 109.47275 * 305.87311 * 1 2 3 26 26 H 1.08997 * 109.46975 * 65.87172 * 1 2 3 27 27 H 1.00899 * 110.99722 * 60.00292 * 4 2 1 28 28 H 1.00900 * 110.99712 * 183.95489 * 4 2 1 29 29 H 1.07998 * 125.89984 * 0.02562 * 8 7 5 30 30 H 1.08997 * 109.47206 * 269.97368 * 11 10 9 31 31 H 1.09002 * 109.47379 * 29.97402 * 11 10 9 32 32 H 1.08998 * 109.46913 * 149.97197 * 11 10 9 33 33 H 1.07993 * 126.12641 * 180.02562 * 12 10 9 34 34 H 1.08999 * 109.47612 * 59.99298 * 14 13 5 35 35 H 1.09005 * 109.47286 * 179.97438 * 14 13 5 36 36 H 1.09003 * 109.46765 * 299.99707 * 14 13 5 37 37 H 1.08999 * 109.46908 * 287.25378 * 15 13 5 38 38 H 1.09008 * 109.46991 * 47.24812 * 15 13 5 39 39 H 0.97004 * 119.99586 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0400 -0.7213 -1.2493 6 1 1.6953 -0.1944 -2.1391 7 6 1.5122 -2.1327 -1.2650 8 6 2.0316 -3.2136 -0.5451 9 7 1.3068 -4.2693 -0.8133 10 7 0.3080 -3.8953 -1.7217 11 6 -0.7163 -4.7767 -2.2876 12 6 0.4556 -2.5796 -1.9828 13 7 3.5087 -0.7479 -1.2341 14 6 4.0326 -1.5377 -2.3563 15 6 4.0601 0.6138 -1.2459 16 6 5.5298 0.5635 -0.9167 17 1 6.0066 -0.3851 -0.7189 18 6 6.2656 1.7284 -0.8681 19 7 5.6849 2.8835 -1.1095 20 14 8.0875 1.6661 -0.4607 21 1 8.8702 1.5170 -1.7138 22 1 8.4848 2.9222 0.2245 23 1 8.3560 0.5094 0.4312 24 1 -0.3633 -1.0223 0.1052 25 1 -0.3634 0.6022 0.8327 26 1 -0.3633 0.4201 -0.9379 27 1 1.6962 -1.6480 1.2227 28 1 3.0262 -0.6501 1.2558 29 1 2.8818 -3.1814 0.1201 30 1 -0.3436 -5.2210 -3.2105 31 1 -0.9514 -5.5659 -1.5735 32 1 -1.6158 -4.1989 -2.4998 33 1 -0.1594 -1.9890 -2.6455 34 1 3.7007 -1.0975 -3.2967 35 1 5.1221 -1.5405 -2.3214 36 1 3.6637 -2.5608 -2.2840 37 1 3.9238 1.0523 -2.2345 38 1 3.5422 1.2220 -0.5042 39 1 6.2027 3.7031 -1.0756 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043126738.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:33 Heat of formation + Delta-G solvation = 64.703481 kcal Electronic energy + Delta-G solvation = -19460.063050 eV Core-core repulsion = 16631.714156 eV Total energy + Delta-G solvation = -2828.348894 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.28889 -39.19701 -35.87731 -34.43283 -33.89192 -31.60815 -29.59896 -29.29639 -28.06963 -27.21419 -25.13285 -22.85412 -22.05695 -21.73457 -20.16321 -18.56302 -17.45473 -17.01677 -16.71745 -16.23881 -15.96017 -15.76111 -15.39501 -15.05255 -14.61547 -14.14138 -14.00243 -13.79616 -13.50168 -13.32876 -13.17390 -13.08958 -12.77068 -12.63578 -12.53590 -12.38896 -12.12983 -12.10115 -11.66949 -11.26669 -11.22146 -10.53028 -10.29049 -9.58346 -9.10921 -8.93063 -8.14739 -6.23099 0.97969 1.43454 1.44704 1.55939 1.75066 1.85989 2.44189 3.17949 3.28203 3.70226 3.98399 4.04269 4.16877 4.36354 4.43453 4.48552 4.52215 4.56632 4.64581 4.70692 4.73226 4.78891 4.94046 5.02252 5.09012 5.17245 5.21094 5.31301 5.35578 5.44777 5.70306 5.72474 6.11919 6.19347 6.39977 6.46421 6.68694 6.80827 6.82824 6.93206 7.46063 8.95876 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.031796 B = 0.005744 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.405114 B = 4873.701497 C = 5247.329273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.100 3.900 3 H 0.052 0.948 4 N -0.832 5.832 5 C 0.130 3.870 6 H 0.026 0.974 7 C -0.226 4.226 8 C 0.062 3.938 9 N -0.327 5.327 10 N -0.376 5.376 11 C 0.095 3.905 12 C 0.063 3.937 13 N -0.528 5.528 14 C 0.052 3.948 15 C 0.207 3.793 16 C -0.515 4.515 17 H 0.061 0.939 18 C 0.004 3.996 19 N -0.934 5.934 20 Si 0.964 3.036 21 H -0.277 1.277 22 H -0.285 1.285 23 H -0.265 1.265 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.336 0.664 28 H 0.343 0.657 29 H 0.174 0.826 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.198 0.802 34 H 0.002 0.998 35 H 0.053 0.947 36 H 0.066 0.934 37 H -0.046 1.046 38 H 0.019 0.981 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.867 -12.258 -2.847 18.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.013 4.013 3 H 0.071 0.929 4 N -0.361 5.361 5 C 0.018 3.982 6 H 0.044 0.956 7 C -0.238 4.238 8 C -0.123 4.123 9 N -0.150 5.150 10 N -0.158 5.158 11 C -0.045 4.045 12 C -0.085 4.085 13 N -0.252 5.252 14 C -0.097 4.097 15 C 0.081 3.919 16 C -0.554 4.554 17 H 0.080 0.920 18 C -0.194 4.194 19 N -0.575 5.575 20 Si 0.789 3.211 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.189 1.189 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.149 0.851 28 H 0.156 0.844 29 H 0.191 0.809 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.132 0.868 33 H 0.215 0.785 34 H 0.021 0.979 35 H 0.072 0.928 36 H 0.085 0.915 37 H -0.028 1.028 38 H 0.037 0.963 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.412 -13.128 -1.845 19.582 hybrid contribution 1.581 1.139 -1.582 2.510 sum -12.831 -11.989 -3.427 17.891 Atomic orbital electron populations 1.21654 0.92960 1.01901 1.01813 1.21368 0.95836 0.96441 0.87649 0.92948 1.59086 1.17097 1.20772 1.39195 1.20621 0.87963 0.91673 0.97929 0.95643 1.19744 1.01478 0.95887 1.06651 1.23644 0.99020 0.89893 0.99780 1.77299 1.02771 1.23893 1.10990 1.48729 1.25076 1.07583 1.34446 1.22172 0.88500 0.94494 0.99339 1.22604 0.99395 0.85732 1.00721 1.61959 1.05116 1.14949 1.43208 1.22064 0.99977 0.97122 0.90532 1.19444 0.94599 0.84753 0.93099 1.21437 0.94612 0.93051 1.46263 0.92031 1.25815 1.03123 0.95031 0.95440 1.70086 1.37892 0.98410 1.51074 0.85464 0.79705 0.77597 0.78318 1.20274 1.21039 1.18937 0.92377 0.92425 0.91593 0.85110 0.84371 0.80888 0.89869 0.89053 0.86754 0.78477 0.97935 0.92773 0.91535 1.02849 0.96272 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.00 71.98 0.65 -2.70 16 2 C 0.10 3.42 2.91 44.92 0.13 3.55 16 3 H 0.05 2.16 6.24 -2.39 -0.01 2.15 16 4 N -0.83 -28.43 9.12 -168.67 -1.54 -29.97 16 5 C 0.13 4.47 1.83 44.17 0.08 4.55 16 6 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 7 C -0.23 -6.47 2.45 -20.14 -0.05 -6.52 16 8 C 0.06 1.85 8.70 85.23 0.74 2.59 16 9 N -0.33 -9.36 12.58 -57.03 -0.72 -10.08 16 10 N -0.38 -8.29 4.01 -369.58 -1.48 -9.78 16 11 C 0.09 1.11 11.47 127.77 1.47 2.58 16 12 C 0.06 1.43 10.85 83.54 0.91 2.33 16 13 N -0.53 -21.82 3.74 -906.01 -3.39 -25.21 16 14 C 0.05 2.03 8.99 127.69 1.15 3.18 16 15 C 0.21 10.74 4.58 85.56 0.39 11.13 16 16 C -0.52 -28.71 8.49 25.60 0.22 -28.49 16 17 H 0.06 3.38 7.31 -2.91 -0.02 3.36 16 18 C 0.00 0.21 5.46 84.65 0.46 0.68 16 19 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 20 Si 0.96 44.51 29.54 68.60 2.03 46.53 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H 0.06 1.46 7.07 -2.39 -0.02 1.44 16 25 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.34 10.52 6.56 -89.69 -0.59 9.93 16 28 H 0.34 13.25 8.49 -89.69 -0.76 12.49 16 29 H 0.17 5.35 7.95 -2.91 -0.02 5.33 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.20 3.15 8.06 -2.91 -0.02 3.12 16 34 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.05 2.29 6.96 -2.38 -0.02 2.27 16 36 H 0.07 2.35 6.08 -2.39 -0.01 2.33 16 37 H -0.05 -2.67 8.09 -2.39 -0.02 -2.69 16 38 H 0.02 1.07 5.80 -2.38 -0.01 1.06 16 39 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -66.17 312.20 1.02 -65.14 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: -0.30 Total: 26.26 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 6.14 Total: -7.13 kcal Atomic # 7 Polarization: -123.96 SS G_CDS: -6.85 Total: -130.80 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -66.17 1.02 -65.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043126738.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.846 kcal (2) G-P(sol) polarization free energy of solvation -66.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds