Wall clock time and date at job start Mon Mar 30 2020 04:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46907 * 109.47053 * 2 1 4 4 C 1.46896 * 111.00215 * 72.60952 * 3 2 1 5 5 C 1.50701 * 109.47300 * 199.49730 * 4 3 2 6 6 H 1.07998 * 119.99678 * 5.02814 * 5 4 3 7 7 C 1.37873 * 120.00082 * 185.02833 * 5 4 3 8 8 N 1.31509 * 119.99996 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99962 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46801 * 59.99864 * 9 7 5 11 11 H 1.48496 * 109.46949 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46638 * 300.00007 * 9 7 5 13 13 C 1.46899 * 110.99749 * 196.56258 * 3 2 1 14 14 H 1.09001 * 109.47065 * 203.32253 * 13 3 2 15 15 C 1.53002 * 109.47027 * 323.32479 * 13 3 2 16 16 N 1.46904 * 109.47174 * 300.92878 * 15 13 3 17 17 C 1.50703 * 109.47386 * 83.32104 * 13 3 2 18 18 C 1.39874 * 126.03807 * 312.21305 * 17 13 3 19 19 N 1.30840 * 108.20088 * 180.22708 * 18 17 13 20 20 N 1.40089 * 108.20283 * 359.78421 * 19 18 17 21 21 C 1.46502 * 126.03475 * 180.02562 * 20 19 18 22 22 C 1.34948 * 107.92860 * 359.97438 * 20 19 18 23 23 H 1.08993 * 109.46918 * 181.62693 * 1 2 3 24 24 H 1.08999 * 109.47228 * 301.62968 * 1 2 3 25 25 H 1.09008 * 109.46731 * 61.62149 * 1 2 3 26 26 H 1.08997 * 109.46886 * 239.99967 * 2 1 3 27 27 H 1.09001 * 109.46895 * 119.99521 * 2 1 3 28 28 H 1.09007 * 109.47050 * 319.49467 * 4 3 2 29 29 H 1.08997 * 109.47597 * 79.49453 * 4 3 2 30 30 H 0.96999 * 120.00237 * 179.97438 * 8 7 5 31 31 H 1.08991 * 109.47415 * 60.93133 * 15 13 3 32 32 H 1.09002 * 109.47025 * 180.93518 * 15 13 3 33 33 H 1.00892 * 111.00043 * 180.02562 * 16 15 13 34 34 H 1.00906 * 110.99977 * 303.96160 * 16 15 13 35 35 H 1.07997 * 125.89936 * 0.02562 * 18 17 13 36 36 H 1.08996 * 109.47291 * 269.97082 * 21 20 19 37 37 H 1.09001 * 109.47337 * 29.97267 * 21 20 19 38 38 H 1.08999 * 109.46812 * 149.97283 * 21 20 19 39 39 H 1.07998 * 126.12964 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.8088 2.0180 1.3087 5 6 1.8620 3.5164 1.1564 6 1 1.9538 3.9564 0.1744 7 6 1.7935 4.3254 2.2707 8 7 1.6812 3.7896 3.4665 9 14 1.8602 6.1827 2.0821 10 1 0.7244 6.6357 1.2394 11 1 1.7680 6.8198 3.4202 12 1 3.1405 6.5689 1.4364 13 6 3.4345 1.4432 -0.3909 14 1 3.8819 2.3576 -0.0013 15 6 4.1719 0.2307 0.1810 16 7 4.0491 0.2286 1.6449 17 6 3.5412 1.4328 -1.8942 18 6 2.8789 0.5565 -2.7601 19 7 3.2262 0.8532 -3.9862 20 7 4.1180 1.9325 -3.9393 21 6 4.7493 2.5796 -5.0922 22 6 4.2920 2.2717 -2.6448 23 1 -0.3633 -1.0272 0.0292 24 1 -0.3633 0.5389 0.8750 25 1 -0.3633 0.4885 -0.9042 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.8339 1.7271 1.7001 29 1 2.5884 1.6950 1.9985 30 1 1.6333 4.3587 4.2505 31 1 3.7352 -0.6832 -0.2215 32 1 5.2251 0.2824 -0.0951 33 1 4.5285 -0.5629 2.0468 34 1 4.3883 1.0940 2.0375 35 1 2.2007 -0.2313 -2.4671 36 1 5.6953 2.0854 -5.3132 37 1 4.0898 2.5051 -5.9568 38 1 4.9324 3.6296 -4.8642 39 1 4.9217 3.0669 -2.2740 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043231689.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:00 Heat of formation + Delta-G solvation = 98.743850 kcal Electronic energy + Delta-G solvation = -19447.588886 eV Core-core repulsion = 16620.716093 eV Total energy + Delta-G solvation = -2826.872793 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.88002 -37.74198 -33.32913 -32.95295 -32.36251 -30.79557 -29.27798 -27.85116 -25.97809 -24.89020 -22.73477 -21.94735 -20.57276 -20.09125 -18.78023 -16.58143 -16.28044 -15.25472 -15.11247 -14.82773 -14.68377 -14.25458 -13.98378 -13.42289 -13.26241 -12.85325 -12.62331 -12.38548 -12.15294 -11.86960 -11.71594 -11.38490 -11.10221 -10.76807 -10.73634 -10.65617 -10.43996 -9.95116 -9.90110 -9.50397 -9.06546 -9.00400 -8.32024 -8.21024 -7.94271 -6.74402 -5.86168 -3.85665 2.22097 2.80658 3.23486 3.38116 3.43185 3.46373 4.53435 4.68058 5.04967 5.13395 5.15400 5.27738 5.37726 5.43562 5.47234 5.63208 5.85706 5.93951 5.96152 6.08260 6.12601 6.23171 6.33283 6.44045 6.68006 6.76638 6.91217 7.03126 7.08993 7.32073 7.52484 7.62125 7.85661 7.97826 8.02308 8.06125 8.40595 8.53099 8.83177 9.25790 9.76790 11.22789 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.017339 B = 0.007607 C = 0.006270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.456012 B = 3679.730956 C = 4464.917040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 N -0.517 5.517 4 C 0.183 3.817 5 C -0.500 4.500 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.888 3.112 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.164 3.836 14 H 0.088 0.912 15 C 0.042 3.958 16 N -0.837 5.837 17 C -0.195 4.195 18 C 0.062 3.938 19 N -0.312 5.312 20 N -0.386 5.386 21 C 0.107 3.893 22 C 0.049 3.951 23 H 0.040 0.960 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.021 0.979 29 H 0.035 0.965 30 H 0.258 0.742 31 H 0.067 0.933 32 H 0.013 0.987 33 H 0.326 0.674 34 H 0.349 0.651 35 H 0.180 0.820 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.424 -5.660 -10.512 14.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 N -0.240 5.240 4 C 0.058 3.942 5 C -0.539 4.539 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.053 3.947 14 H 0.106 0.894 15 C -0.090 4.090 16 N -0.367 5.367 17 C -0.208 4.208 18 C -0.124 4.124 19 N -0.133 5.133 20 N -0.169 5.169 21 C -0.035 4.035 22 C -0.096 4.096 23 H 0.059 0.941 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.031 0.969 33 H 0.138 0.862 34 H 0.164 0.836 35 H 0.197 0.803 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.277 -5.609 -12.151 14.782 hybrid contribution 1.580 1.076 1.368 2.351 sum 7.857 -4.533 -10.783 14.091 Atomic orbital electron populations 1.21782 0.96544 0.99473 1.02468 1.22120 0.94784 0.91715 0.99392 1.62245 1.13796 1.14198 1.33793 1.19978 0.97343 0.92809 0.84092 1.21284 1.48371 0.91651 0.92562 0.92558 1.24930 0.96180 0.98101 0.95372 1.69956 1.51521 1.34785 0.97638 0.86728 0.78376 0.86400 0.76797 1.20494 1.21601 1.20636 1.19800 0.90475 0.96890 0.87507 0.89414 1.22511 0.97316 1.00429 0.88773 1.58895 1.65278 1.07896 1.04671 1.20119 1.03608 1.00151 0.96874 1.23856 0.99066 0.99941 0.89491 1.77260 1.09758 1.04043 1.22272 1.48311 1.36566 1.26644 1.05417 1.21713 0.97561 0.96994 0.87196 1.22243 1.02442 1.01011 0.83937 0.94106 0.92195 0.93019 0.93257 0.93677 0.96120 0.94702 0.93260 0.91427 0.96853 0.86181 0.83630 0.80315 0.91424 0.89780 0.89855 0.81393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 10.01 37.16 0.37 -2.22 16 2 C 0.05 0.89 3.96 -3.82 -0.02 0.87 16 3 N -0.52 -10.88 4.16 -229.47 -0.95 -11.83 16 4 C 0.18 4.62 4.31 -4.98 -0.02 4.60 16 5 C -0.50 -13.87 8.51 -34.44 -0.29 -14.17 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.16 3.05 2.36 -68.86 -0.16 2.89 16 14 H 0.09 1.82 7.20 -51.93 -0.37 1.45 16 15 C 0.04 0.68 5.49 -3.82 -0.02 0.66 16 16 N -0.84 -13.76 6.56 -10.37 -0.07 -13.82 16 17 C -0.20 -3.36 5.03 -105.05 -0.53 -3.88 16 18 C 0.06 1.05 11.05 -17.36 -0.19 0.86 16 19 N -0.31 -5.25 12.58 30.63 0.39 -4.87 16 20 N -0.39 -5.64 4.01 -68.16 -0.27 -5.91 16 21 C 0.11 1.02 11.47 59.85 0.69 1.70 16 22 C 0.05 0.75 11.39 -17.22 -0.20 0.55 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 1.20 6.53 -51.93 -0.34 0.87 16 25 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 26 H 0.05 0.81 4.12 -51.93 -0.21 0.59 16 27 H 0.05 0.86 6.59 -51.93 -0.34 0.52 16 28 H 0.02 0.58 6.27 -51.92 -0.33 0.25 16 29 H 0.04 0.90 5.10 -51.93 -0.26 0.64 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.07 1.06 6.35 -51.93 -0.33 0.73 16 32 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.33 4.48 9.08 -39.30 -0.36 4.12 16 34 H 0.35 6.17 8.10 -39.29 -0.32 5.85 16 35 H 0.18 2.78 5.76 -52.49 -0.30 2.48 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.17 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 308.62 15.07 4.65 4.65 Total: -1.00 -31.74 308.62 -6.68 -38.42 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -5.67 Total: 9.04 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -0.47 Total: -6.71 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -0.17 Total: -62.07 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.74 -6.68 -38.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043231689.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.168 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds