Wall clock time and date at job start Mon Mar 30 2020 04:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46907 * 109.47053 * 2 1 4 4 C 1.46896 * 111.00215 * 72.60952 * 3 2 1 5 5 C 1.50701 * 109.47300 * 199.49730 * 4 3 2 6 6 H 1.07998 * 119.99678 * 5.02814 * 5 4 3 7 7 C 1.37873 * 120.00082 * 185.02833 * 5 4 3 8 8 N 1.31509 * 119.99996 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99962 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46801 * 59.99864 * 9 7 5 11 11 H 1.48496 * 109.46949 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46638 * 300.00007 * 9 7 5 13 13 C 1.46899 * 110.99749 * 196.56258 * 3 2 1 14 14 H 1.09001 * 109.47065 * 203.32253 * 13 3 2 15 15 C 1.53002 * 109.47027 * 323.32479 * 13 3 2 16 16 N 1.46904 * 109.47174 * 300.92878 * 15 13 3 17 17 C 1.50703 * 109.47386 * 83.32104 * 13 3 2 18 18 C 1.39874 * 126.03807 * 312.21305 * 17 13 3 19 19 N 1.30840 * 108.20088 * 180.22708 * 18 17 13 20 20 N 1.40089 * 108.20283 * 359.78421 * 19 18 17 21 21 C 1.46502 * 126.03475 * 180.02562 * 20 19 18 22 22 C 1.34948 * 107.92860 * 359.97438 * 20 19 18 23 23 H 1.08993 * 109.46918 * 181.62693 * 1 2 3 24 24 H 1.08999 * 109.47228 * 301.62968 * 1 2 3 25 25 H 1.09008 * 109.46731 * 61.62149 * 1 2 3 26 26 H 1.08997 * 109.46886 * 239.99967 * 2 1 3 27 27 H 1.09001 * 109.46895 * 119.99521 * 2 1 3 28 28 H 1.09007 * 109.47050 * 319.49467 * 4 3 2 29 29 H 1.08997 * 109.47597 * 79.49453 * 4 3 2 30 30 H 0.96999 * 120.00237 * 179.97438 * 8 7 5 31 31 H 1.08991 * 109.47415 * 60.93133 * 15 13 3 32 32 H 1.09002 * 109.47025 * 180.93518 * 15 13 3 33 33 H 1.00892 * 111.00043 * 180.02562 * 16 15 13 34 34 H 1.00906 * 110.99977 * 303.96160 * 16 15 13 35 35 H 1.07997 * 125.89936 * 0.02562 * 18 17 13 36 36 H 1.08996 * 109.47291 * 269.97082 * 21 20 19 37 37 H 1.09001 * 109.47337 * 29.97267 * 21 20 19 38 38 H 1.08999 * 109.46812 * 149.97283 * 21 20 19 39 39 H 1.07998 * 126.12964 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.8088 2.0180 1.3087 5 6 1.8620 3.5164 1.1564 6 1 1.9538 3.9564 0.1744 7 6 1.7935 4.3254 2.2707 8 7 1.6812 3.7896 3.4665 9 14 1.8602 6.1827 2.0821 10 1 0.7244 6.6357 1.2394 11 1 1.7680 6.8198 3.4202 12 1 3.1405 6.5689 1.4364 13 6 3.4345 1.4432 -0.3909 14 1 3.8819 2.3576 -0.0013 15 6 4.1719 0.2307 0.1810 16 7 4.0491 0.2286 1.6449 17 6 3.5412 1.4328 -1.8942 18 6 2.8789 0.5565 -2.7601 19 7 3.2262 0.8532 -3.9862 20 7 4.1180 1.9325 -3.9393 21 6 4.7493 2.5796 -5.0922 22 6 4.2920 2.2717 -2.6448 23 1 -0.3633 -1.0272 0.0292 24 1 -0.3633 0.5389 0.8750 25 1 -0.3633 0.4885 -0.9042 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.8339 1.7271 1.7001 29 1 2.5884 1.6950 1.9985 30 1 1.6333 4.3587 4.2505 31 1 3.7352 -0.6832 -0.2215 32 1 5.2251 0.2824 -0.0951 33 1 4.5285 -0.5629 2.0468 34 1 4.3883 1.0940 2.0375 35 1 2.2007 -0.2313 -2.4671 36 1 5.6953 2.0854 -5.3132 37 1 4.0898 2.5051 -5.9568 38 1 4.9324 3.6296 -4.8642 39 1 4.9217 3.0669 -2.2740 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043231689.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:00 Heat of formation + Delta-G solvation = 75.316514 kcal Electronic energy + Delta-G solvation = -19448.604771 eV Core-core repulsion = 16620.716093 eV Total energy + Delta-G solvation = -2827.888678 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.09178 -39.25926 -35.01104 -34.27046 -33.98328 -32.12497 -30.90141 -29.25596 -27.47368 -26.28680 -24.39285 -23.54056 -21.76030 -21.47040 -20.24701 -18.36344 -17.75366 -16.79761 -16.46092 -16.22867 -16.07328 -15.69348 -15.56086 -14.82818 -14.67466 -14.05112 -13.88969 -13.68517 -13.55540 -13.30882 -13.22202 -12.93397 -12.78315 -12.59395 -12.37977 -12.23202 -11.97468 -11.79742 -11.34951 -11.28122 -10.96072 -10.42130 -10.23016 -9.59330 -9.18580 -8.41259 -7.99446 -6.08553 1.03593 1.43361 1.46157 1.53372 1.79474 1.95045 2.49463 3.28368 3.55476 3.68772 3.97364 4.09966 4.23511 4.32351 4.49244 4.50351 4.54693 4.66099 4.71892 4.73686 4.81142 4.88521 4.94691 5.02982 5.25838 5.28717 5.46375 5.54658 5.58129 5.76693 5.80427 5.96094 6.23603 6.32180 6.37387 6.69737 6.73442 6.84966 6.99818 7.14282 7.59210 9.06332 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.017339 B = 0.007607 C = 0.006270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.456012 B = 3679.730956 C = 4464.917040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.051 3.949 3 N -0.527 5.527 4 C 0.199 3.801 5 C -0.510 4.510 6 H 0.047 0.953 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.952 3.048 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.171 3.829 14 H 0.060 0.940 15 C 0.052 3.948 16 N -0.848 5.848 17 C -0.222 4.222 18 C 0.055 3.945 19 N -0.332 5.332 20 N -0.381 5.381 21 C 0.096 3.904 22 C 0.054 3.946 23 H 0.071 0.929 24 H 0.028 0.972 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.038 0.962 28 H -0.015 1.015 29 H 0.028 0.972 30 H 0.259 0.741 31 H 0.075 0.925 32 H 0.029 0.971 33 H 0.342 0.658 34 H 0.340 0.660 35 H 0.185 0.815 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.576 -5.341 -12.108 15.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.077 4.077 3 N -0.250 5.250 4 C 0.073 3.927 5 C -0.549 4.549 6 H 0.065 0.935 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.778 3.222 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.192 1.192 13 C 0.060 3.940 14 H 0.079 0.921 15 C -0.080 4.080 16 N -0.380 5.380 17 C -0.234 4.234 18 C -0.130 4.130 19 N -0.155 5.155 20 N -0.164 5.164 21 C -0.044 4.044 22 C -0.093 4.093 23 H 0.090 0.910 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.003 0.997 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.202 0.798 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 7.445 -5.312 -13.789 16.546 hybrid contribution 1.255 0.966 1.785 2.386 sum 8.700 -4.345 -12.004 15.449 Atomic orbital electron populations 1.21743 0.96300 1.00948 1.00767 1.22157 0.94988 0.90388 1.00170 1.62149 1.16012 1.15725 1.31127 1.19622 0.95059 0.92029 0.86037 1.21531 1.48110 0.93159 0.92141 0.93499 1.25680 0.95805 1.02604 0.95021 1.70079 1.52374 1.36366 0.98289 0.85712 0.78705 0.80939 0.76820 1.20514 1.21209 1.19245 1.19657 0.88914 0.96703 0.88735 0.92150 1.22374 0.97866 0.99440 0.88294 1.58827 1.65903 1.08108 1.05152 1.20042 1.05542 1.01795 0.96014 1.23918 0.99351 1.00253 0.89516 1.77202 1.10773 1.05245 1.22251 1.48705 1.35534 1.25731 1.06425 1.22139 0.98217 0.98282 0.85769 1.22608 1.01785 1.00688 0.84184 0.90972 0.95273 0.93277 0.90741 0.94391 0.99653 0.95442 0.93244 0.90714 0.95315 0.84399 0.84625 0.79832 0.89318 0.89195 0.87450 0.79043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.99 10.01 71.98 0.72 -4.27 16 2 C 0.05 1.85 3.96 86.30 0.34 2.19 16 3 N -0.53 -22.40 4.16 -879.89 -3.66 -26.06 16 4 C 0.20 10.35 4.31 85.56 0.37 10.72 16 5 C -0.51 -28.89 8.51 25.60 0.22 -28.67 16 6 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 7 C 0.01 0.36 5.46 84.65 0.46 0.82 16 8 N -0.93 -55.50 13.29 21.44 0.28 -55.21 16 9 Si 0.95 44.62 29.54 68.60 2.03 46.64 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 13 C 0.17 6.29 2.36 44.17 0.10 6.40 16 14 H 0.06 2.54 7.20 -2.39 -0.02 2.52 16 15 C 0.05 1.63 5.49 86.30 0.47 2.11 16 16 N -0.85 -27.77 6.56 -186.71 -1.23 -28.99 16 17 C -0.22 -7.36 5.03 -20.14 -0.10 -7.46 16 18 C 0.05 1.77 11.05 85.24 0.94 2.71 16 19 N -0.33 -10.63 12.58 -57.02 -0.72 -11.35 16 20 N -0.38 -10.21 4.01 -369.57 -1.48 -11.69 16 21 C 0.10 1.51 11.47 127.77 1.47 2.97 16 22 C 0.05 1.55 11.39 83.54 0.95 2.51 16 23 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.03 1.19 6.53 -2.39 -0.02 1.18 16 25 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.07 2.34 4.12 -2.39 -0.01 2.33 16 27 H 0.04 1.44 6.59 -2.39 -0.02 1.43 16 28 H -0.01 -0.85 6.27 -2.38 -0.01 -0.87 16 29 H 0.03 1.48 5.10 -2.39 -0.01 1.46 16 30 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 31 H 0.07 2.23 6.35 -2.39 -0.02 2.21 16 32 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.34 9.14 9.08 -89.70 -0.81 8.33 16 34 H 0.34 12.22 8.10 -89.69 -0.73 11.49 16 35 H 0.19 5.48 5.76 -2.91 -0.02 5.46 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.19 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -68.67 308.62 0.70 -67.97 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: -0.47 Total: 28.67 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 5.95 Total: -9.97 kcal Atomic # 7 Polarization: -126.50 SS G_CDS: -6.80 Total: -133.30 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -68.67 0.70 -67.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043231689.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.283 kcal (2) G-P(sol) polarization free energy of solvation -68.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds