Wall clock time and date at job start Mon Mar 30 2020 04:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00058 * 2 1 4 4 H 1.48494 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46812 * 299.99453 * 3 2 1 6 6 H 1.48494 * 109.47320 * 59.99268 * 3 2 1 7 7 C 1.37874 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00034 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47360 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99870 * 180.02562 * 12 11 10 14 14 H 1.09000 * 110.43437 * 325.70104 * 13 12 11 15 15 C 1.54981 * 110.49097 * 88.24488 * 13 12 11 16 16 C 1.55512 * 104.78324 * 116.15467 * 15 13 12 17 17 N 1.47090 * 103.57412 * 336.09691 * 16 15 13 18 18 C 1.45665 * 116.53816 * 162.37873 * 17 16 15 19 19 C 1.53630 * 107.80124 * 177.30817 * 18 17 16 20 20 C 1.52821 * 110.69567 * 57.37387 * 19 18 17 21 21 C 1.53661 * 110.61475 * 306.25093 * 20 19 18 22 22 C 1.48714 * 103.70695 * 42.18509 * 17 16 15 23 23 H 1.09001 * 110.93304 * 74.13996 * 22 17 16 24 24 H 0.97004 * 119.99990 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47558 * 59.99970 * 9 7 2 26 26 H 1.08998 * 109.47216 * 299.99633 * 9 7 2 27 27 H 1.09001 * 109.46514 * 59.99676 * 10 9 7 28 28 H 1.08998 * 109.46924 * 300.00156 * 10 9 7 29 29 H 1.09001 * 109.47393 * 60.00433 * 11 10 9 30 30 H 1.08998 * 109.47408 * 300.00078 * 11 10 9 31 31 H 1.00901 * 110.99869 * 56.04956 * 12 11 10 32 32 H 1.08998 * 110.35442 * 235.04962 * 15 13 12 33 33 H 1.09007 * 110.34713 * 357.32018 * 15 13 12 34 34 H 1.09001 * 110.62173 * 217.54649 * 16 15 13 35 35 H 1.09001 * 110.54442 * 94.60223 * 16 15 13 36 36 H 1.09004 * 109.79700 * 57.73481 * 18 17 16 37 37 H 1.08998 * 109.84384 * 296.91525 * 18 17 16 38 38 H 1.09003 * 109.22963 * 297.05863 * 19 18 17 39 39 H 1.08992 * 109.19669 * 177.66548 * 19 18 17 40 40 H 1.09001 * 109.24359 * 185.96625 * 20 19 18 41 41 H 1.08998 * 109.24592 * 66.54874 * 20 19 18 42 42 H 1.08997 * 109.83960 * 296.61159 * 21 20 19 43 43 H 1.09003 * 109.89045 * 175.67293 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2123 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9870 0.0012 12 7 2.4348 -6.1036 0.0018 13 6 1.7345 -7.3950 0.0018 14 1 0.8111 -7.3271 0.5770 15 6 1.4373 -7.8510 -1.4493 16 6 2.2573 -9.1600 -1.6296 17 7 3.3322 -9.0340 -0.6335 18 6 4.0351 -10.2588 -0.2761 19 6 5.1485 -9.8890 0.7158 20 6 4.5675 -9.1877 1.9431 21 6 3.7084 -7.9850 1.5228 22 6 2.6389 -8.4957 0.5669 23 1 2.0390 -9.2675 1.0491 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6043 0.8905 28 1 2.8718 -3.6043 -0.8894 29 1 0.8533 -5.0451 -0.8886 30 1 0.8538 -5.0445 0.8913 31 1 3.0696 -6.0362 0.7832 32 1 0.3727 -8.0484 -1.5741 33 1 1.7691 -7.0940 -2.1599 34 1 2.6716 -9.2179 -2.6362 35 1 1.6380 -10.0316 -1.4177 36 1 4.4703 -10.7086 -1.1685 37 1 3.3430 -10.9599 0.1904 38 1 5.8598 -9.2242 0.2255 39 1 5.6636 -10.7963 1.0310 40 1 5.3826 -8.8423 2.5789 41 1 3.9509 -9.8923 2.5012 42 1 4.3300 -7.2439 1.0206 43 1 3.2386 -7.5403 2.4001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578582.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:33 Heat of formation + Delta-G solvation = -12.147093 kcal Electronic energy + Delta-G solvation = -18956.546730 eV Core-core repulsion = 16228.405689 eV Total energy + Delta-G solvation = -2728.141042 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.22705 -36.27653 -34.68172 -33.43013 -31.89880 -30.06461 -29.26257 -26.95583 -25.26588 -23.23816 -22.45079 -21.78625 -20.58087 -19.97496 -19.25999 -16.35603 -16.03561 -15.85998 -15.19286 -15.06174 -14.54261 -14.41449 -13.96327 -13.69031 -13.36941 -13.10509 -12.64580 -12.46893 -12.25241 -11.83757 -11.59297 -11.41644 -11.20064 -11.09658 -11.00266 -10.79890 -10.68296 -10.52612 -10.44840 -10.43718 -10.31995 -9.63179 -9.26905 -8.98303 -8.47728 -8.30190 -8.00675 -5.95251 -3.96910 3.34496 3.41723 3.46668 3.85883 4.41446 4.45999 4.51026 4.54943 4.74746 4.92977 5.02075 5.06630 5.19800 5.21095 5.36407 5.37822 5.40672 5.54073 5.62388 5.67043 5.71373 5.78357 5.87000 5.90140 5.92786 5.96032 6.02612 6.06992 6.25642 6.33904 6.41687 6.76828 6.80711 6.91469 7.14810 7.21333 7.50605 7.74187 7.77448 7.90288 8.05911 8.49638 9.10743 9.66935 11.16286 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037126 B = 0.003679 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.997539 B = 7608.754504 C = 8008.541254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.058 3.942 12 N -0.676 5.676 13 C 0.089 3.911 14 H 0.047 0.953 15 C -0.114 4.114 16 C 0.046 3.954 17 N -0.511 5.511 18 C 0.054 3.946 19 C -0.114 4.114 20 C -0.117 4.117 21 C -0.114 4.114 22 C 0.063 3.937 23 H 0.049 0.951 24 H 0.259 0.741 25 H 0.015 0.985 26 H 0.013 0.987 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.021 0.979 31 H 0.340 0.660 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.033 0.967 36 H 0.073 0.927 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.958 -22.113 1.387 22.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.070 4.070 12 N -0.310 5.310 13 C -0.022 4.022 14 H 0.065 0.935 15 C -0.152 4.152 16 C -0.082 4.082 17 N -0.236 5.236 18 C -0.075 4.075 19 C -0.152 4.152 20 C -0.155 4.155 21 C -0.152 4.152 22 C -0.045 4.045 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.031 0.969 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.161 0.839 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.314 -21.683 0.500 22.589 hybrid contribution -0.620 0.262 1.185 1.363 sum 5.694 -21.422 1.685 22.230 Atomic orbital electron populations 1.69980 1.06060 1.26374 1.51280 1.25033 0.94842 0.99255 0.95459 0.86547 0.80180 0.83846 0.77509 1.19706 1.21040 1.21095 1.21311 0.93112 0.91070 1.49991 0.92611 1.19072 0.94045 0.91440 0.97052 1.21606 0.99121 0.93004 1.00672 1.22170 0.94209 0.91024 0.99632 1.60666 1.19749 1.00367 1.50223 1.22029 0.94673 0.89741 0.95759 0.93494 1.22725 0.98344 0.96763 0.97399 1.22861 0.91861 0.96815 0.96665 1.63877 1.25738 1.26638 1.07363 1.22031 0.96053 0.90807 0.98584 1.21574 0.97762 1.00255 0.95588 1.21550 0.99387 0.97195 0.97362 1.21543 0.97312 0.98362 0.98002 1.22541 0.94119 0.96344 0.91522 0.93333 0.93150 0.96614 0.96876 0.93792 0.92536 0.91646 0.96071 0.83856 0.91866 0.89430 0.90276 0.94850 0.90899 0.95337 0.90969 0.91970 0.91737 0.92763 0.89341 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.26 5.41 -26.73 -0.14 -2.41 16 11 C 0.06 1.04 5.54 -3.82 -0.02 1.02 16 12 N -0.68 -10.29 6.11 -105.48 -0.64 -10.93 16 13 C 0.09 1.16 3.29 -66.53 -0.22 0.94 16 14 H 0.05 0.62 7.85 -51.93 -0.41 0.21 16 15 C -0.11 -1.39 6.84 -24.35 -0.17 -1.55 16 16 C 0.05 0.50 6.72 -2.39 -0.02 0.48 16 17 N -0.51 -5.85 4.84 -224.28 -1.09 -6.94 16 18 C 0.05 0.51 5.87 -4.16 -0.02 0.49 16 19 C -0.11 -1.00 6.06 -26.50 -0.16 -1.16 16 20 C -0.12 -1.05 5.95 -26.48 -0.16 -1.21 16 21 C -0.11 -1.22 4.39 -26.77 -0.12 -1.33 16 22 C 0.06 0.72 2.44 -66.95 -0.16 0.56 16 23 H 0.05 0.54 8.00 -51.93 -0.42 0.12 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.02 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.34 4.94 5.78 -39.29 -0.23 4.72 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.22 7.97 -51.93 -0.41 0.81 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.03 0.26 8.00 -51.93 -0.42 -0.15 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 1.07 6.85 -51.93 -0.36 0.71 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 329.69 15.07 4.97 4.97 Total: -1.00 -30.35 329.69 -10.90 -41.25 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -8.11 Total: -1.10 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -1.74 Total: -17.55 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.99 Total: -44.59 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.35 -10.90 -41.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578582.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.106 kcal (2) G-P(sol) polarization free energy of solvation -30.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds