Wall clock time and date at job start Mon Mar 30 2020 04:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99977 * 2 1 4 4 H 1.48499 * 109.47251 * 270.00538 * 3 2 1 5 5 H 1.48506 * 109.47003 * 30.00126 * 3 2 1 6 6 H 1.48504 * 109.47276 * 150.00305 * 3 2 1 7 7 C 1.37874 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99807 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00326 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47352 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47216 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47006 * 179.97438 * 11 10 9 13 13 C 1.46896 * 110.99891 * 180.02562 * 12 11 10 14 14 H 1.09005 * 110.54551 * 32.38299 * 13 12 11 15 15 C 1.54993 * 110.49064 * 269.76663 * 13 12 11 16 16 C 1.55191 * 104.93289 * 238.82944 * 15 13 12 17 17 N 1.47089 * 103.52419 * 336.00471 * 16 15 13 18 18 C 1.45669 * 116.53006 * 162.40718 * 17 16 15 19 19 C 1.53626 * 107.80574 * 177.34066 * 18 17 16 20 20 C 1.52818 * 110.70475 * 57.37695 * 19 18 17 21 21 C 1.53664 * 110.57224 * 306.26779 * 20 19 18 22 22 C 1.48720 * 103.70277 * 42.23418 * 17 16 15 23 23 H 1.08993 * 110.34232 * 73.84247 * 22 17 16 24 24 H 0.97000 * 120.00271 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47407 * 59.99906 * 9 7 2 26 26 H 1.09004 * 109.46612 * 299.99615 * 9 7 2 27 27 H 1.09000 * 109.46969 * 59.99246 * 10 9 7 28 28 H 1.08995 * 109.47077 * 299.99725 * 10 9 7 29 29 H 1.08996 * 109.46710 * 59.99949 * 11 10 9 30 30 H 1.08995 * 109.47214 * 300.00059 * 11 10 9 31 31 H 1.00895 * 110.99844 * 56.04970 * 12 11 10 32 32 H 1.09003 * 110.34521 * 357.69619 * 15 13 12 33 33 H 1.08999 * 110.34845 * 119.85992 * 15 13 12 34 34 H 1.09001 * 110.61198 * 217.48918 * 16 15 13 35 35 H 1.09003 * 110.60963 * 94.51258 * 16 15 13 36 36 H 1.09001 * 109.79930 * 57.76424 * 18 17 16 37 37 H 1.08999 * 109.84112 * 296.94226 * 18 17 16 38 38 H 1.08999 * 109.23170 * 297.05735 * 19 18 17 39 39 H 1.09000 * 109.22923 * 177.68782 * 19 18 17 40 40 H 1.09002 * 109.25184 * 66.54122 * 20 19 18 41 41 H 1.09004 * 109.24817 * 185.99897 * 20 19 18 42 42 H 1.09001 * 109.83609 * 175.62665 * 21 20 19 43 43 H 1.09000 * 109.83918 * 296.59277 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4804 -4.9871 -0.0033 12 7 2.4350 -6.1036 -0.0049 13 6 1.7348 -7.3950 -0.0061 14 1 0.7945 -7.3197 -0.5523 15 6 1.4819 -7.8763 1.4453 16 6 2.1969 -9.2504 1.5412 17 7 2.2490 -9.7092 0.1447 18 6 3.1985 -10.7722 -0.1559 19 6 3.0394 -11.1386 -1.6394 20 6 3.2591 -9.9128 -2.5251 21 6 2.3453 -8.7582 -2.0855 22 6 2.6226 -8.4861 -0.6143 23 1 3.6746 -8.2489 -0.4565 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5564 -0.8919 26 1 0.6241 -2.5575 0.8881 27 1 2.8721 -3.6050 0.8872 28 1 2.8719 -3.6036 -0.8927 29 1 0.8534 -5.0443 -0.8931 30 1 0.8540 -5.0454 0.8868 31 1 3.0704 -6.0372 0.7761 32 1 1.9136 -7.1738 2.1583 33 1 0.4130 -7.9900 1.6262 34 1 1.6170 -9.9429 2.1514 35 1 3.2028 -9.1322 1.9441 36 1 2.9862 -11.6432 0.4641 37 1 4.2145 -10.4247 0.0315 38 1 2.0352 -11.5277 -1.8074 39 1 3.7691 -11.9052 -1.9001 40 1 4.2994 -9.5965 -2.4495 41 1 3.0369 -10.1729 -3.5601 42 1 2.5660 -7.8674 -2.6736 43 1 1.3012 -9.0413 -2.2191 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:36 Heat of formation + Delta-G solvation = -37.493809 kcal Electronic energy + Delta-G solvation = -18772.820495 eV Core-core repulsion = 16043.580338 eV Total energy + Delta-G solvation = -2729.240158 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07383 -37.73822 -35.95735 -34.91420 -33.39344 -31.70047 -30.05133 -28.45436 -26.58301 -24.25894 -23.90206 -22.59521 -22.07738 -21.30849 -20.65416 -18.48872 -17.09586 -16.77504 -16.42635 -16.11322 -16.02955 -15.51967 -15.03485 -14.67325 -14.50473 -14.33161 -14.25381 -13.88379 -13.50520 -13.34007 -13.15096 -12.82314 -12.53597 -12.43767 -12.33134 -12.21703 -12.18208 -11.73635 -11.58543 -11.50919 -11.43926 -11.33349 -11.16465 -11.00593 -10.55351 -9.38383 -9.32514 -8.20076 -6.31221 1.40077 1.41707 1.52821 2.41072 2.87245 3.12979 3.35719 3.54180 3.75981 4.00936 4.06157 4.10860 4.18582 4.23898 4.35726 4.39270 4.43939 4.54298 4.62604 4.68917 4.71611 4.81529 4.86590 4.90510 4.95503 5.00391 5.06265 5.07152 5.13916 5.14480 5.24750 5.25914 5.36238 5.49946 5.52049 5.75387 5.84878 5.86568 6.12173 6.26188 6.31093 6.48080 6.85829 7.38050 8.91910 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.043976 B = 0.003388 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.553341 B = 8262.379619 C = 8542.226262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.092 4.092 11 C 0.076 3.924 12 N -0.681 5.681 13 C 0.088 3.912 14 H 0.076 0.924 15 C -0.149 4.149 16 C 0.049 3.951 17 N -0.534 5.534 18 C 0.053 3.947 19 C -0.110 4.110 20 C -0.118 4.118 21 C -0.102 4.102 22 C 0.081 3.919 23 H 0.048 0.952 24 H 0.264 0.736 25 H -0.009 1.009 26 H -0.009 1.009 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.024 0.976 31 H 0.343 0.657 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.031 0.969 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.428 -23.231 -0.048 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.130 4.130 11 C -0.053 4.053 12 N -0.312 5.312 13 C -0.022 4.022 14 H 0.094 0.906 15 C -0.189 4.189 16 C -0.079 4.079 17 N -0.259 5.259 18 C -0.075 4.075 19 C -0.148 4.148 20 C -0.156 4.156 21 C -0.140 4.140 22 C -0.028 4.028 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.162 0.838 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.102 0.898 37 H 0.049 0.951 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.895 -23.361 -0.864 24.109 hybrid contribution 0.446 1.391 1.214 1.899 sum 6.341 -21.970 0.350 22.870 Atomic orbital electron populations 1.70097 1.07815 1.27784 1.51736 1.26001 0.95798 1.03430 0.94723 0.85434 0.78662 0.78343 0.78527 1.19754 1.20667 1.18708 1.21706 0.93544 0.92436 1.50474 0.92252 1.18966 0.94419 0.93105 0.94736 1.21374 0.98004 0.92944 1.00679 1.21812 0.93901 0.90012 0.99571 1.60487 1.19483 1.01027 1.50197 1.22142 0.96569 0.88252 0.95285 0.90600 1.23283 1.01702 0.96968 0.96955 1.22775 0.99238 0.95837 0.90047 1.63910 1.48772 1.06694 1.06548 1.22099 0.93067 0.94615 0.97717 1.21569 1.02625 0.97578 0.93034 1.21582 0.99143 0.95014 0.99848 1.21412 1.00268 0.98408 0.93869 1.22243 0.97151 0.88746 0.94636 0.93414 0.92756 0.99090 0.99062 0.93128 0.92942 0.92197 0.95797 0.83796 0.91199 0.90844 0.89274 0.93940 0.89771 0.95079 0.91571 0.90087 0.92518 0.90963 0.92067 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.54 -31.64 9.11 25.60 0.23 -31.41 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.37 4.97 29.85 0.15 1.52 16 10 C -0.09 -3.87 5.41 30.60 0.17 -3.71 16 11 C 0.08 2.66 5.55 86.30 0.48 3.14 16 12 N -0.68 -19.55 6.29 -487.62 -3.07 -22.62 16 13 C 0.09 2.21 3.01 45.68 0.14 2.35 16 14 H 0.08 2.08 7.68 -2.38 -0.02 2.06 16 15 C -0.15 -3.23 6.73 32.03 0.22 -3.01 16 16 C 0.05 0.92 6.71 87.02 0.58 1.50 16 17 N -0.53 -10.75 4.84 -864.34 -4.18 -14.93 16 18 C 0.05 0.88 5.87 86.75 0.51 1.38 16 19 C -0.11 -1.64 6.06 30.74 0.19 -1.46 16 20 C -0.12 -2.01 5.95 30.76 0.18 -1.83 16 21 C -0.10 -2.17 5.64 30.54 0.17 -2.00 16 22 C 0.08 1.82 2.19 44.37 0.10 1.92 16 23 H 0.05 1.17 7.92 -2.39 -0.02 1.15 16 24 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 25 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 26 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 30 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.34 9.19 8.12 -89.70 -0.73 8.46 16 32 H 0.07 1.51 7.57 -2.39 -0.02 1.49 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.03 0.53 7.99 -2.39 -0.02 0.51 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -63.37 333.47 -1.15 -64.52 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.21 Total: 14.84 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 3.57 Total: -31.25 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: -6.97 Total: -94.98 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -63.37 -1.15 -64.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.027 kcal (2) G-P(sol) polarization free energy of solvation -63.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds