Wall clock time and date at job start Mon Mar 30 2020 04:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86790 * 120.00170 * 2 1 4 4 H 1.48507 * 109.47240 * 90.00193 * 3 2 1 5 5 H 1.48502 * 109.47180 * 209.99972 * 3 2 1 6 6 H 1.48501 * 109.47458 * 329.99717 * 3 2 1 7 7 C 1.38810 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00246 * 196.78036 * 7 2 1 9 9 N 1.36942 * 120.00248 * 16.77842 * 7 2 1 10 10 C 1.47078 * 120.87882 * 26.82455 * 9 7 2 11 11 C 1.53692 * 108.27856 * 128.75731 * 10 9 7 12 12 N 1.46903 * 109.25755 * 54.07982 * 11 10 9 13 13 C 1.46897 * 110.99973 * 172.61165 * 12 11 10 14 14 C 1.54239 * 108.89753 * 60.69643 * 13 12 11 15 15 C 1.50558 * 108.48302 * 159.17862 * 14 13 12 16 16 C 1.54069 * 112.41616 * 94.26842 * 15 14 13 17 17 C 1.54069 * 112.81428 * 318.27879 * 16 15 14 18 18 C 1.50473 * 112.49685 * 318.28479 * 17 16 15 19 19 C 1.45544 * 108.89433 * 297.90775 * 13 12 11 20 20 C 1.46897 * 111.26829 * 296.75819 * 12 11 10 21 21 C 1.47074 * 120.88247 * 207.10578 * 9 7 2 22 22 H 0.97008 * 119.99855 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.62879 * 248.52113 * 10 9 7 24 24 H 1.09001 * 109.63018 * 9.10225 * 10 9 7 25 25 H 1.09007 * 109.64794 * 294.07940 * 11 10 9 26 26 H 1.09004 * 109.44567 * 173.96089 * 11 10 9 27 27 H 1.09001 * 108.87395 * 179.30213 * 13 12 11 28 28 H 1.08998 * 109.62821 * 278.97284 * 14 13 12 29 29 H 1.08998 * 109.63003 * 39.55515 * 14 13 12 30 30 H 1.08996 * 108.92027 * 333.51307 * 15 14 13 31 31 H 1.09004 * 108.91665 * 215.01811 * 15 14 13 32 32 H 1.09001 * 108.81503 * 197.41858 * 16 15 14 33 33 H 1.08996 * 108.81079 * 79.13633 * 16 15 14 34 34 H 1.08999 * 108.87855 * 197.50631 * 17 16 15 35 35 H 1.09007 * 108.79733 * 79.00627 * 17 16 15 36 36 H 1.09005 * 109.62938 * 334.44425 * 18 17 16 37 37 H 1.09000 * 109.79044 * 213.95781 * 18 17 16 38 38 H 1.09004 * 108.89325 * 303.43820 * 19 13 12 39 39 H 1.08997 * 108.89779 * 62.03106 * 19 13 12 40 40 H 1.09004 * 109.49264 * 303.14537 * 20 12 11 41 41 H 1.09003 * 109.51682 * 183.07632 * 20 12 11 42 42 H 1.09000 * 109.63075 * 350.88766 * 21 9 7 43 43 H 1.08996 * 109.63500 * 111.47803 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5477 1.4400 -0.7000 6 1 1.4477 2.6526 -0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0556 -1.2223 0.2695 9 7 1.3692 -2.3627 -0.3434 10 6 0.2035 -2.3447 -1.2401 11 6 0.4453 -3.3629 -2.3656 12 7 0.7546 -4.6724 -1.7762 13 6 0.8205 -5.7131 -2.8108 14 6 1.9374 -5.3526 -3.8115 15 6 2.3504 -6.6053 -4.5375 16 6 1.6056 -6.7821 -5.8745 17 6 0.1092 -6.4285 -5.7761 18 6 -0.5222 -6.9439 -4.5112 19 6 -0.4815 -5.8236 -3.4517 20 6 1.9989 -4.6254 -0.9968 21 6 1.8244 -3.6596 0.1801 22 1 -0.4850 0.8401 -0.0004 23 1 -0.6922 -2.6174 -0.6818 24 1 0.0840 -1.3482 -1.6654 25 1 1.2819 -3.0351 -2.9828 26 1 -0.4509 -3.4434 -2.9809 27 1 1.0634 -6.6650 -2.3385 28 1 1.5656 -4.6188 -4.5266 29 1 2.7927 -4.9433 -3.2739 30 1 2.1437 -7.4665 -3.9021 31 1 3.4218 -6.5632 -4.7336 32 1 1.7013 -7.8193 -6.1958 33 1 2.0699 -6.1402 -6.6231 34 1 -0.4119 -6.8591 -6.6312 35 1 0.0017 -5.3442 -5.8075 36 1 0.0339 -7.8093 -4.1506 37 1 -1.5567 -7.2279 -4.7043 38 1 -1.2334 -6.0308 -2.6901 39 1 -0.7195 -4.8753 -3.9334 40 1 2.8138 -4.2800 -1.6330 41 1 2.2296 -5.6214 -0.6188 42 1 2.7772 -3.5329 0.6941 43 1 1.0816 -4.0563 0.8722 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049818718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:12 Heat of formation + Delta-G solvation = 18.368261 kcal Electronic energy + Delta-G solvation = -20051.064537 eV Core-core repulsion = 17324.246740 eV Total energy + Delta-G solvation = -2726.817796 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.77342 -36.99229 -34.33028 -32.22513 -31.67522 -29.93197 -29.67878 -26.22949 -24.83605 -23.76807 -22.82978 -22.20533 -20.04880 -19.40963 -18.53671 -16.69503 -15.93764 -15.25926 -14.72481 -14.55756 -14.23042 -14.02409 -13.57028 -13.46957 -13.26483 -12.93361 -12.81861 -12.35010 -12.12583 -11.91872 -11.47648 -11.03947 -10.98997 -10.74893 -10.67711 -10.61811 -10.48370 -10.42505 -10.31052 -10.18630 -10.04230 -9.88483 -9.63500 -9.43797 -8.45855 -7.63050 -6.59809 -5.73766 -3.14748 3.39548 3.46353 3.48736 4.38008 4.53803 4.65575 4.85548 4.93238 5.17154 5.22707 5.30105 5.41303 5.44424 5.45858 5.53523 5.66396 5.75665 5.82349 5.95516 6.03945 6.05998 6.09815 6.15736 6.16752 6.20477 6.26135 6.29448 6.37048 6.42400 6.44899 6.50200 6.61186 6.68994 6.79786 7.01154 7.33474 7.71329 7.75404 7.80594 7.89956 8.48520 9.26167 9.89876 10.48990 11.34863 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.035354 B = 0.005240 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.794154 B = 5342.420818 C = 5364.332678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.250 4.250 8 H 0.064 0.936 9 N -0.595 5.595 10 C 0.178 3.822 11 C 0.032 3.968 12 N -0.529 5.529 13 C 0.089 3.911 14 C -0.151 4.151 15 C -0.112 4.112 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.113 4.113 19 C -0.114 4.114 20 C 0.043 3.957 21 C 0.148 3.852 22 H 0.253 0.747 23 H 0.025 0.975 24 H 0.086 0.914 25 H 0.026 0.974 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.030 0.970 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.147 -13.522 -10.040 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.206 1.206 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.318 5.318 10 C 0.052 3.948 11 C -0.097 4.097 12 N -0.252 5.252 13 C -0.020 4.020 14 C -0.190 4.190 15 C -0.150 4.150 16 C -0.152 4.152 17 C -0.156 4.156 18 C -0.151 4.151 19 C -0.151 4.151 20 C -0.086 4.086 21 C 0.022 3.978 22 H 0.063 0.937 23 H 0.043 0.957 24 H 0.104 0.896 25 H 0.044 0.956 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.661 -13.466 -9.687 16.601 hybrid contribution 1.112 1.094 -0.577 1.663 sum 1.773 -12.372 -10.263 16.172 Atomic orbital electron populations 1.70033 1.05202 1.25369 1.54261 1.25014 0.95283 0.98287 1.01164 0.86323 0.79112 0.83801 0.77695 1.21414 1.20608 1.21582 1.19183 0.92436 0.84846 1.41528 0.91785 1.44128 1.34237 1.01303 1.52160 1.20952 0.88832 0.96484 0.88491 1.23003 0.98662 0.89580 0.98462 1.62313 1.34084 1.05754 1.23086 1.20633 0.94396 0.95823 0.91157 1.22047 0.99948 0.97861 0.99102 1.21266 0.99107 0.98366 0.96310 1.21898 0.95265 1.00743 0.97335 1.21350 0.95151 1.01403 0.97727 1.21273 1.00158 0.98438 0.95268 1.20575 0.97690 0.98719 0.98165 1.22622 0.90245 0.99090 0.96658 1.20982 0.97593 0.86579 0.92695 0.93689 0.95737 0.89576 0.95596 0.92048 0.91328 0.91723 0.91552 0.92293 0.92847 0.92718 0.92667 0.92764 0.92049 0.91889 0.92089 0.91372 0.91788 0.95152 0.92354 0.92833 0.95840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 11.15 55.49 0.62 -26.06 16 2 C 0.00 0.02 4.94 -17.43 -0.09 -0.06 16 3 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.25 -7.03 9.63 -15.06 -0.14 -7.17 16 8 H 0.06 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -15.43 3.03 -171.74 -0.52 -15.95 16 10 C 0.18 4.41 5.44 -3.37 -0.02 4.40 16 11 C 0.03 0.64 4.88 -3.46 -0.02 0.62 16 12 N -0.53 -9.56 4.56 -229.51 -1.05 -10.60 16 13 C 0.09 1.28 1.74 -70.58 -0.12 1.15 16 14 C -0.15 -2.05 3.87 -27.30 -0.11 -2.16 16 15 C -0.11 -1.26 5.32 -27.39 -0.15 -1.40 16 16 C -0.11 -1.15 5.85 -25.61 -0.15 -1.30 16 17 C -0.12 -1.21 5.32 -27.43 -0.15 -1.36 16 18 C -0.11 -1.20 5.61 -27.34 -0.15 -1.35 16 19 C -0.11 -1.50 4.32 -29.60 -0.13 -1.62 16 20 C 0.04 0.80 5.17 -3.70 -0.02 0.78 16 21 C 0.15 3.25 6.69 -3.60 -0.02 3.23 16 22 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 23 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.09 2.35 6.13 -51.93 -0.32 2.03 16 25 H 0.03 0.54 7.18 -51.92 -0.37 0.16 16 26 H 0.06 1.13 6.00 -51.93 -0.31 0.81 16 27 H 0.07 0.97 7.37 -51.93 -0.38 0.59 16 28 H 0.06 0.93 6.59 -51.93 -0.34 0.59 16 29 H 0.07 1.01 5.88 -51.93 -0.31 0.71 16 30 H 0.06 0.64 6.63 -51.93 -0.34 0.29 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.69 6.62 -51.92 -0.34 0.35 16 36 H 0.06 0.65 6.98 -51.93 -0.36 0.29 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.90 5.48 -51.93 -0.28 0.61 16 40 H 0.03 0.58 6.35 -51.93 -0.33 0.25 16 41 H 0.06 0.94 8.04 -51.93 -0.42 0.53 16 42 H 0.05 1.13 7.95 -51.93 -0.41 0.72 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 306.94 15.07 4.63 4.63 Total: -1.00 -29.23 306.94 -10.07 -39.30 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -7.46 Total: -2.00 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -1.26 Total: -6.25 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.95 Total: -52.61 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.23 -10.07 -39.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049818718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.666 kcal (2) G-P(sol) polarization free energy of solvation -29.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds