Wall clock time and date at job start Mon Mar 30 2020 04:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53007 * 109.46459 * 2 1 4 4 N 1.46890 * 109.47213 * 120.00188 * 2 1 3 5 5 C 1.46904 * 110.99807 * 150.24791 * 4 2 1 6 6 C 1.50695 * 109.46831 * 287.97426 * 5 4 2 7 7 H 1.08001 * 120.00352 * 4.84971 * 6 5 4 8 8 C 1.37881 * 119.99704 * 184.83915 * 6 5 4 9 9 N 1.31514 * 119.99882 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00104 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47107 * 89.99568 * 10 8 6 12 12 H 1.48502 * 109.46804 * 209.99738 * 10 8 6 13 13 H 1.48495 * 109.46928 * 329.99379 * 10 8 6 14 14 C 1.46902 * 110.99992 * 274.19651 * 4 2 1 15 15 C 1.53004 * 109.47001 * 76.91313 * 14 4 2 16 16 N 1.46498 * 109.47367 * 173.45923 * 15 14 4 17 17 C 1.35967 * 126.06840 * 125.02598 * 16 15 14 18 18 C 1.35706 * 107.55012 * 180.02562 * 17 16 15 19 19 N 1.40802 * 126.06261 * 180.02562 * 18 17 16 20 20 C 1.40212 * 107.86785 * 359.97438 * 18 17 16 21 21 N 1.30863 * 108.36487 * 359.97438 * 20 18 17 22 22 H 1.09002 * 109.46981 * 314.07010 * 1 2 3 23 23 H 1.08998 * 109.47386 * 74.07855 * 1 2 3 24 24 H 1.09000 * 109.46637 * 194.07440 * 1 2 3 25 25 H 1.08993 * 109.46869 * 240.00777 * 2 1 3 26 26 H 1.08999 * 109.46566 * 168.08293 * 3 2 1 27 27 H 1.08995 * 109.47549 * 288.08234 * 3 2 1 28 28 H 1.09000 * 109.47336 * 48.08764 * 3 2 1 29 29 H 1.08997 * 109.47169 * 47.97950 * 5 4 2 30 30 H 1.09003 * 109.46571 * 167.97667 * 5 4 2 31 31 H 0.96999 * 120.00332 * 180.02562 * 9 8 6 32 32 H 1.08997 * 109.47674 * 316.91564 * 14 4 2 33 33 H 1.09006 * 109.47488 * 196.91167 * 14 4 2 34 34 H 1.09004 * 109.46920 * 53.46152 * 15 14 4 35 35 H 1.08998 * 109.47174 * 293.46246 * 15 14 4 36 36 H 1.07999 * 126.22767 * 359.97438 * 17 16 15 37 37 H 0.97001 * 119.99876 * 179.97438 * 19 18 17 38 38 H 0.96998 * 120.00517 * 359.97438 * 19 18 17 39 39 H 1.08004 * 125.81962 * 180.27345 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 3.3178 -1.3316 0.9451 6 6 3.1215 -2.5298 0.0525 7 1 2.1448 -2.7453 -0.3551 8 6 4.1888 -3.3508 -0.2440 9 7 4.0176 -4.3962 -1.0233 10 14 5.8779 -2.9783 0.4614 11 1 6.0313 -3.6663 1.7684 12 1 6.9233 -3.4595 -0.4772 13 1 6.0219 -1.5129 0.6535 14 6 2.1006 0.2271 2.3421 15 6 0.6978 0.4672 2.9038 16 7 0.7929 1.2564 4.1343 17 6 0.1540 2.4304 4.3838 18 6 0.5089 2.8326 5.6303 19 7 0.0702 4.0020 6.2802 20 6 1.3891 1.8764 6.1566 21 7 1.5575 0.9351 5.2632 22 1 -0.3633 0.7148 0.7384 23 1 -0.3634 0.2819 -0.9882 24 1 -0.3632 -0.9968 0.2499 25 1 1.8934 -0.5137 -0.8900 26 1 3.1091 1.4500 0.2122 27 1 1.8603 1.8915 -0.9768 28 1 1.5138 2.0140 0.7647 29 1 3.9837 -0.6200 0.4570 30 1 3.7569 -1.6507 1.8903 31 1 4.7683 -4.9741 -1.2316 32 1 2.5285 1.1751 2.0161 33 1 2.7320 -0.2095 3.1159 34 1 0.2250 -0.4905 3.1219 35 1 0.1004 1.0085 2.1702 36 1 -0.5138 2.9489 3.7118 37 1 0.3812 4.2046 7.1764 38 1 -0.5431 4.6052 5.8319 39 1 1.8460 1.9085 7.1347 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050614865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:42 Heat of formation + Delta-G solvation = 96.032876 kcal Electronic energy + Delta-G solvation = -18827.699119 eV Core-core repulsion = 16000.708769 eV Total energy + Delta-G solvation = -2826.990349 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.91979 -38.25150 -34.57716 -32.93457 -32.49289 -31.15682 -29.48596 -27.67433 -26.94977 -25.94631 -22.95048 -21.72725 -20.81624 -20.46684 -18.91741 -17.15155 -16.70935 -16.09594 -15.97916 -15.00911 -14.80593 -14.65643 -14.20662 -13.75843 -13.35726 -13.19118 -12.65026 -12.51922 -12.32964 -12.16868 -12.11558 -11.79865 -11.04320 -10.99459 -10.87695 -10.66307 -10.56271 -10.45189 -10.11326 -10.00796 -9.89034 -9.32731 -9.18105 -8.55880 -7.43152 -7.16433 -6.04647 -4.01558 2.05146 2.65834 3.04565 3.30137 3.37347 3.39705 4.05756 4.43018 4.58086 4.86388 4.96257 5.17579 5.27769 5.38333 5.41447 5.52512 5.61690 5.65537 5.79834 5.80678 5.97703 6.08082 6.13227 6.16573 6.27025 6.37349 6.52491 6.65769 6.70566 6.88903 6.98171 7.16767 7.59305 7.60959 7.75430 7.88304 7.98603 8.03589 8.65054 9.04443 9.57372 11.08474 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027294 B = 0.005129 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.617378 B = 5457.346510 C = 6074.244137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 C -0.176 4.176 4 N -0.518 5.518 5 C 0.165 3.835 6 C -0.507 4.507 7 H 0.081 0.919 8 C 0.069 3.931 9 N -0.900 5.900 10 Si 0.873 3.127 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.269 1.269 14 C 0.033 3.967 15 C 0.138 3.862 16 N -0.358 5.358 17 C -0.031 4.031 18 C 0.050 3.950 19 N -0.880 5.880 20 C -0.004 4.004 21 N -0.266 5.266 22 H 0.045 0.955 23 H 0.050 0.950 24 H 0.067 0.933 25 H 0.096 0.904 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.049 0.951 29 H -0.011 1.011 30 H 0.024 0.976 31 H 0.263 0.737 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.165 0.835 37 H 0.395 0.605 38 H 0.392 0.608 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.026 16.629 9.730 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.036 4.036 3 C -0.234 4.234 4 N -0.242 5.242 5 C 0.039 3.961 6 C -0.545 4.545 7 H 0.099 0.901 8 C -0.132 4.132 9 N -0.539 5.539 10 Si 0.700 3.300 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.194 1.194 14 C -0.097 4.097 15 C 0.017 3.983 16 N -0.146 5.146 17 C -0.180 4.180 18 C -0.059 4.059 19 N -0.427 5.427 20 C -0.192 4.192 21 N -0.090 5.090 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.086 0.914 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.007 0.993 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.183 0.817 37 H 0.222 0.778 38 H 0.219 0.781 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -7.652 14.807 9.305 19.089 hybrid contribution 1.034 1.842 0.508 2.173 sum -6.618 16.650 9.812 20.428 Atomic orbital electron populations 1.22046 0.95623 1.02112 1.00201 1.21729 0.94841 0.91679 0.95312 1.22436 1.01204 0.98720 1.01085 1.62044 1.30776 1.28402 1.02939 1.20203 0.85032 0.94364 0.96512 1.21011 0.97631 1.07732 1.28137 0.90068 1.24876 0.98588 0.94817 0.94940 1.69887 1.31586 1.15433 1.37002 0.86896 0.84696 0.79033 0.79329 1.20085 1.21228 1.19396 1.22469 0.95018 0.96902 0.95294 1.22120 0.99744 0.95960 0.80506 1.48456 1.35502 1.17630 1.13034 1.21691 1.05898 0.92159 0.98204 1.17699 1.02507 0.92308 0.93391 1.41438 1.57294 1.24276 1.19711 1.23494 1.01813 0.93499 1.00374 1.77265 1.15193 1.22738 0.93795 0.93670 0.93078 0.91391 0.88591 0.92783 0.92723 0.93160 0.99303 0.95763 0.92675 0.93798 0.90339 0.89066 0.88352 0.81746 0.77810 0.78052 0.80688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.80 37.16 0.33 -1.74 16 2 C 0.07 1.29 2.65 -67.71 -0.18 1.11 16 3 C -0.18 -2.66 7.76 37.16 0.29 -2.37 16 4 N -0.52 -10.39 4.28 -228.08 -0.98 -11.37 16 5 C 0.16 3.97 3.70 -4.98 -0.02 3.96 16 6 C -0.51 -14.24 8.92 -34.44 -0.31 -14.55 16 7 H 0.08 2.47 7.94 -52.49 -0.42 2.05 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 9 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 10 Si 0.87 21.69 27.38 -169.99 -4.65 17.04 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.27 -6.48 6.68 56.52 0.38 -6.11 16 14 C 0.03 0.57 4.70 -3.82 -0.02 0.55 16 15 C 0.14 2.02 5.91 -4.04 -0.02 2.00 16 16 N -0.36 -5.26 3.71 -61.00 -0.23 -5.49 16 17 C -0.03 -0.39 11.52 -16.62 -0.19 -0.58 16 18 C 0.05 0.58 7.26 -83.90 -0.61 -0.02 16 19 N -0.88 -7.16 9.20 32.29 0.30 -6.86 16 20 C 0.00 -0.05 12.03 -17.22 -0.21 -0.26 16 21 N -0.27 -4.27 12.30 30.70 0.38 -3.89 16 22 H 0.04 0.56 5.00 -51.93 -0.26 0.30 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.10 1.98 7.00 -51.93 -0.36 1.61 16 26 H 0.05 0.89 7.07 -51.93 -0.37 0.53 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.68 6.20 -51.93 -0.32 0.36 16 29 H -0.01 -0.26 6.92 -51.93 -0.36 -0.62 16 30 H 0.02 0.60 6.83 -51.93 -0.35 0.25 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.04 0.75 5.13 -51.93 -0.27 0.48 16 33 H 0.08 1.52 7.50 -51.93 -0.39 1.13 16 34 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.10 1.24 4.51 -51.93 -0.23 1.00 16 36 H 0.17 1.54 8.06 -52.49 -0.42 1.11 16 37 H 0.39 2.51 8.96 -40.82 -0.37 2.14 16 38 H 0.39 2.50 8.96 -40.82 -0.37 2.13 16 39 H 0.18 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 309.47 15.07 4.66 4.66 Total: -1.00 -31.99 309.47 -6.54 -38.53 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.76 Total: 4.12 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -1.04 Total: -10.01 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.25 Total: -54.35 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.65 Total: 17.04 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.99 -6.54 -38.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050614865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.565 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds