Wall clock time and date at job start Mon Mar 30 2020 04:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53007 * 109.46459 * 2 1 4 4 N 1.46890 * 109.47213 * 120.00188 * 2 1 3 5 5 C 1.46904 * 110.99807 * 150.24791 * 4 2 1 6 6 C 1.50695 * 109.46831 * 287.97426 * 5 4 2 7 7 H 1.08001 * 120.00352 * 4.84971 * 6 5 4 8 8 C 1.37881 * 119.99704 * 184.83915 * 6 5 4 9 9 N 1.31514 * 119.99882 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00104 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47107 * 89.99568 * 10 8 6 12 12 H 1.48502 * 109.46804 * 209.99738 * 10 8 6 13 13 H 1.48495 * 109.46928 * 329.99379 * 10 8 6 14 14 C 1.46902 * 110.99992 * 274.19651 * 4 2 1 15 15 C 1.53004 * 109.47001 * 76.91313 * 14 4 2 16 16 N 1.46498 * 109.47367 * 173.45923 * 15 14 4 17 17 C 1.35967 * 126.06840 * 125.02598 * 16 15 14 18 18 C 1.35706 * 107.55012 * 180.02562 * 17 16 15 19 19 N 1.40802 * 126.06261 * 180.02562 * 18 17 16 20 20 C 1.40212 * 107.86785 * 359.97438 * 18 17 16 21 21 N 1.30863 * 108.36487 * 359.97438 * 20 18 17 22 22 H 1.09002 * 109.46981 * 314.07010 * 1 2 3 23 23 H 1.08998 * 109.47386 * 74.07855 * 1 2 3 24 24 H 1.09000 * 109.46637 * 194.07440 * 1 2 3 25 25 H 1.08993 * 109.46869 * 240.00777 * 2 1 3 26 26 H 1.08999 * 109.46566 * 168.08293 * 3 2 1 27 27 H 1.08995 * 109.47549 * 288.08234 * 3 2 1 28 28 H 1.09000 * 109.47336 * 48.08764 * 3 2 1 29 29 H 1.08997 * 109.47169 * 47.97950 * 5 4 2 30 30 H 1.09003 * 109.46571 * 167.97667 * 5 4 2 31 31 H 0.96999 * 120.00332 * 180.02562 * 9 8 6 32 32 H 1.08997 * 109.47674 * 316.91564 * 14 4 2 33 33 H 1.09006 * 109.47488 * 196.91167 * 14 4 2 34 34 H 1.09004 * 109.46920 * 53.46152 * 15 14 4 35 35 H 1.08998 * 109.47174 * 293.46246 * 15 14 4 36 36 H 1.07999 * 126.22767 * 359.97438 * 17 16 15 37 37 H 0.97001 * 119.99876 * 179.97438 * 19 18 17 38 38 H 0.96998 * 120.00517 * 359.97438 * 19 18 17 39 39 H 1.08004 * 125.81962 * 180.27345 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 3.3178 -1.3316 0.9451 6 6 3.1215 -2.5298 0.0525 7 1 2.1448 -2.7453 -0.3551 8 6 4.1888 -3.3508 -0.2440 9 7 4.0176 -4.3962 -1.0233 10 14 5.8779 -2.9783 0.4614 11 1 6.0313 -3.6663 1.7684 12 1 6.9233 -3.4595 -0.4772 13 1 6.0219 -1.5129 0.6535 14 6 2.1006 0.2271 2.3421 15 6 0.6978 0.4672 2.9038 16 7 0.7929 1.2564 4.1343 17 6 0.1540 2.4304 4.3838 18 6 0.5089 2.8326 5.6303 19 7 0.0702 4.0020 6.2802 20 6 1.3891 1.8764 6.1566 21 7 1.5575 0.9351 5.2632 22 1 -0.3633 0.7148 0.7384 23 1 -0.3634 0.2819 -0.9882 24 1 -0.3632 -0.9968 0.2499 25 1 1.8934 -0.5137 -0.8900 26 1 3.1091 1.4500 0.2122 27 1 1.8603 1.8915 -0.9768 28 1 1.5138 2.0140 0.7647 29 1 3.9837 -0.6200 0.4570 30 1 3.7569 -1.6507 1.8903 31 1 4.7683 -4.9741 -1.2316 32 1 2.5285 1.1751 2.0161 33 1 2.7320 -0.2095 3.1159 34 1 0.2250 -0.4905 3.1219 35 1 0.1004 1.0085 2.1702 36 1 -0.5138 2.9489 3.7118 37 1 0.3812 4.2046 7.1764 38 1 -0.5431 4.6052 5.8319 39 1 1.8460 1.9085 7.1347 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050614865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:42 Heat of formation + Delta-G solvation = 71.798381 kcal Electronic energy + Delta-G solvation = -18828.750006 eV Core-core repulsion = 16000.708769 eV Total energy + Delta-G solvation = -2828.041236 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.90040 -39.72478 -35.53937 -34.88563 -33.63009 -32.76456 -30.79043 -29.00100 -28.14349 -27.40697 -24.21754 -23.61116 -21.79753 -21.51648 -20.34916 -18.88201 -18.16238 -17.36896 -16.73972 -16.46017 -16.20372 -15.86170 -15.68628 -14.96003 -14.81184 -14.64846 -14.35562 -13.82837 -13.76388 -13.39906 -13.30868 -13.18465 -12.81920 -12.58350 -12.22323 -12.13194 -11.91864 -11.81704 -11.55979 -11.50110 -11.40765 -11.22699 -10.78651 -10.27159 -9.02339 -8.29168 -7.99414 -6.31024 1.06760 1.32417 1.33152 1.43355 1.64296 2.13151 2.32402 3.03051 3.18223 3.32938 3.71357 4.00990 4.11088 4.13281 4.23628 4.31091 4.36573 4.51855 4.58841 4.68107 4.77751 4.82246 4.90356 4.91161 4.97038 4.98975 5.04689 5.18756 5.38011 5.51792 5.57057 5.63811 5.99318 6.20054 6.42907 6.61629 6.75158 6.84819 6.88997 7.31975 7.35915 8.87397 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027294 B = 0.005129 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.617378 B = 5457.346510 C = 6074.244137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.068 3.932 3 C -0.167 4.167 4 N -0.531 5.531 5 C 0.176 3.824 6 C -0.509 4.509 7 H 0.043 0.957 8 C 0.012 3.988 9 N -0.945 5.945 10 Si 0.941 3.059 11 H -0.269 1.269 12 H -0.279 1.279 13 H -0.256 1.256 14 C 0.041 3.959 15 C 0.150 3.850 16 N -0.372 5.372 17 C -0.037 4.037 18 C 0.050 3.950 19 N -0.868 5.868 20 C -0.006 4.006 21 N -0.318 5.318 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.074 0.926 28 H 0.073 0.927 29 H -0.013 1.013 30 H 0.018 0.982 31 H 0.267 0.733 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.125 0.875 36 H 0.196 0.804 37 H 0.404 0.596 38 H 0.403 0.597 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.530 19.573 10.941 23.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.040 4.040 3 C -0.225 4.225 4 N -0.255 5.255 5 C 0.049 3.951 6 C -0.548 4.548 7 H 0.061 0.939 8 C -0.186 4.186 9 N -0.586 5.586 10 Si 0.765 3.235 11 H -0.194 1.194 12 H -0.204 1.204 13 H -0.180 1.180 14 C -0.088 4.088 15 C 0.029 3.971 16 N -0.161 5.161 17 C -0.184 4.184 18 C -0.060 4.060 19 N -0.417 5.417 20 C -0.194 4.194 21 N -0.142 5.142 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.005 0.995 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.143 0.857 36 H 0.213 0.787 37 H 0.233 0.767 38 H 0.232 0.768 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -8.183 17.800 10.542 22.247 hybrid contribution 1.089 0.971 0.160 1.467 sum -7.095 18.771 10.702 22.742 Atomic orbital electron populations 1.21963 0.92967 1.01925 1.02280 1.21774 0.96923 0.92692 0.92609 1.22335 1.00140 0.96948 1.03093 1.61965 1.28388 1.30264 1.04855 1.19905 0.87172 0.93099 0.94950 1.21220 0.96061 1.09148 1.28343 0.93910 1.25746 1.02933 0.94586 0.95322 1.70030 1.33053 1.16809 1.38750 0.85811 0.79477 0.79532 0.78684 1.19412 1.20427 1.18040 1.22389 0.96814 0.96169 0.93444 1.21884 0.97733 0.96137 0.81316 1.48378 1.36444 1.18584 1.12669 1.22248 1.05842 0.91306 0.99003 1.17841 1.01847 0.92941 0.93375 1.41421 1.57045 1.23155 1.20077 1.23987 1.01523 0.93088 1.00777 1.77216 1.17166 1.24723 0.95084 0.90724 0.91197 0.93356 0.92563 0.94547 0.90754 0.90774 0.99517 0.96397 0.92436 0.92904 0.92791 0.90523 0.85734 0.78671 0.76686 0.76766 0.78496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 8.80 71.99 0.63 -3.05 16 2 C 0.07 2.39 2.65 44.92 0.12 2.51 16 3 C -0.17 -4.68 7.76 71.98 0.56 -4.12 16 4 N -0.53 -21.50 4.28 -875.51 -3.75 -25.25 16 5 C 0.18 8.64 3.70 85.55 0.32 8.96 16 6 C -0.51 -29.75 8.92 25.60 0.23 -29.52 16 7 H 0.04 2.76 7.94 -2.91 -0.02 2.73 16 8 C 0.01 0.68 5.47 84.66 0.46 1.15 16 9 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 10 Si 0.94 45.34 27.38 68.60 1.88 47.22 16 11 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 H -0.26 -11.72 6.68 99.48 0.66 -11.05 16 14 C 0.04 1.40 4.70 86.30 0.41 1.80 16 15 C 0.15 4.19 5.91 86.38 0.51 4.70 16 16 N -0.37 -10.28 3.71 -346.89 -1.29 -11.57 16 17 C -0.04 -0.79 11.52 83.47 0.96 0.18 16 18 C 0.05 1.02 7.26 37.59 0.27 1.30 16 19 N -0.87 -11.18 9.20 -51.74 -0.48 -11.65 16 20 C -0.01 -0.15 12.03 85.32 1.03 0.88 16 21 N -0.32 -9.93 12.30 -56.78 -0.70 -10.63 16 22 H 0.07 1.59 5.00 -2.39 -0.01 1.57 16 23 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.06 2.40 7.00 -2.39 -0.02 2.38 16 26 H 0.04 1.14 7.07 -2.39 -0.02 1.13 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.07 1.72 6.20 -2.39 -0.01 1.71 16 29 H -0.01 -0.63 6.92 -2.39 -0.02 -0.65 16 30 H 0.02 0.90 6.83 -2.39 -0.02 0.88 16 31 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 32 H 0.05 1.71 5.13 -2.39 -0.01 1.70 16 33 H 0.05 2.11 7.50 -2.38 -0.02 2.09 16 34 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 35 H 0.13 2.71 4.51 -2.39 -0.01 2.70 16 36 H 0.20 2.77 8.06 -2.91 -0.02 2.74 16 37 H 0.40 3.83 8.96 -92.71 -0.83 3.00 16 38 H 0.40 3.64 8.96 -92.71 -0.83 2.81 16 39 H 0.20 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -72.04 309.47 0.83 -71.21 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -0.63 Total: 15.22 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 5.50 Total: -15.22 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -5.91 Total: -118.42 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.22 kcal Total: -72.04 0.83 -71.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050614865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.005 kcal (2) G-P(sol) polarization free energy of solvation -72.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds