Wall clock time and date at job start Mon Mar 30 2020 04:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 119.99576 * 2 1 4 4 H 1.48499 * 109.47291 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47396 * 300.00343 * 3 2 1 6 6 H 1.48500 * 109.47043 * 60.00386 * 3 2 1 7 7 C 1.37875 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99968 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00279 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47337 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46921 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.47147 * 185.28983 * 11 10 9 13 13 C 1.47902 * 110.99807 * 68.93188 * 12 11 10 14 14 C 1.53999 * 107.05652 * 214.15895 * 13 12 11 15 15 C 1.54596 * 105.13869 * 1.22324 * 14 13 12 16 16 C 1.48530 * 110.99980 * 311.53420 * 12 11 10 17 17 H 1.09004 * 110.66865 * 41.28447 * 16 12 11 18 18 C 1.53005 * 110.66763 * 278.15279 * 16 12 11 19 19 H 1.08990 * 110.36672 * 297.34967 * 18 16 12 20 20 C 1.54376 * 110.41051 * 174.99826 * 18 16 12 21 21 C 1.54260 * 105.06363 * 217.37057 * 20 18 16 22 22 C 1.54385 * 105.05881 * 359.97438 * 21 20 18 23 23 N 1.48562 * 110.41022 * 59.82674 * 18 16 12 24 24 H 0.96999 * 120.00565 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.46862 * 300.00067 * 9 7 2 26 26 H 1.09001 * 109.47317 * 59.99454 * 9 7 2 27 27 H 1.08998 * 109.47004 * 299.99793 * 10 9 7 28 28 H 1.08995 * 109.47150 * 60.00001 * 10 9 7 29 29 H 1.09001 * 109.47661 * 305.28847 * 11 10 9 30 30 H 1.09005 * 109.47649 * 65.29266 * 11 10 9 31 31 H 1.09003 * 109.91628 * 333.50205 * 13 12 11 32 32 H 1.08993 * 109.92067 * 94.60984 * 13 12 11 33 33 H 1.09001 * 110.31031 * 120.13601 * 14 13 12 34 34 H 1.08996 * 110.30499 * 242.30773 * 14 13 12 35 35 H 1.08999 * 110.72101 * 140.31611 * 15 14 13 36 36 H 1.09006 * 110.72412 * 263.59998 * 15 14 13 37 37 H 1.08999 * 110.32641 * 336.26629 * 20 18 16 38 38 H 1.09003 * 110.32431 * 98.47136 * 20 18 16 39 39 H 1.08993 * 110.32725 * 118.89648 * 21 20 18 40 40 H 1.09005 * 110.32480 * 241.11055 * 21 20 18 41 41 H 1.09000 * 110.41116 * 142.62920 * 22 21 20 42 42 H 1.08993 * 110.41286 * 265.08004 * 22 21 20 43 43 H 1.00899 * 110.99861 * 277.82276 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8901 2.3966 -1.2124 6 1 1.8902 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 6 1.4806 -4.9870 -0.0020 12 7 2.4301 -6.1006 0.1259 13 6 3.0459 -6.1203 1.4705 14 6 4.4919 -6.6211 1.2979 15 6 4.6610 -6.8505 -0.2216 16 6 3.5551 -5.9536 -0.8326 17 1 3.8852 -4.9160 -0.8823 18 6 3.1531 -6.4609 -2.2190 19 1 2.9215 -7.5252 -2.1810 20 6 4.2804 -6.1913 -3.2387 21 6 3.5558 -5.8113 -4.5463 22 6 2.0514 -5.8839 -4.2069 23 7 1.9905 -5.6931 -2.7346 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5575 0.8881 26 1 0.6248 -2.5563 -0.8919 27 1 2.8728 -3.6038 -0.8909 28 1 2.8715 -3.6046 0.8890 29 1 0.7844 -5.0051 0.8365 30 1 0.9273 -5.0868 -0.9358 31 1 3.0490 -5.1151 1.8922 32 1 2.4916 -6.7948 2.1230 33 1 5.1976 -5.8675 1.6475 34 1 4.6357 -7.5557 1.8399 35 1 5.6474 -6.5264 -0.5531 36 1 4.4923 -7.8972 -0.4748 37 1 4.9079 -5.3668 -2.9002 38 1 4.8807 -7.0892 -3.3856 39 1 3.8274 -4.8003 -4.8497 40 1 3.8002 -6.5228 -5.3352 41 1 1.5081 -5.0877 -4.7158 42 1 1.6463 -6.8577 -4.4817 43 1 1.1253 -6.0515 -2.3591 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051360005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:50 Heat of formation + Delta-G solvation = -2.915870 kcal Electronic energy + Delta-G solvation = -19710.650630 eV Core-core repulsion = 16982.909884 eV Total energy + Delta-G solvation = -2727.740746 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.68928 -37.39940 -34.13557 -32.37976 -30.54583 -30.23585 -29.65908 -26.51699 -25.85230 -23.28294 -21.47781 -21.18300 -20.66460 -20.07754 -18.82868 -16.89359 -16.30179 -15.57357 -15.34937 -14.55875 -14.37873 -13.91770 -13.80093 -13.48806 -12.83758 -12.68859 -12.45369 -12.15574 -12.03297 -11.74271 -11.57075 -11.28435 -11.15493 -11.01188 -10.94410 -10.67195 -10.57120 -10.49848 -10.43122 -10.35514 -10.25561 -9.39043 -9.27651 -9.05555 -8.34309 -8.25845 -7.77413 -5.91741 -3.93092 3.34745 3.41917 3.46307 4.27110 4.32398 4.52327 4.82397 4.89028 4.94756 4.98823 5.12585 5.19021 5.30986 5.43774 5.56882 5.59996 5.66159 5.75237 5.83306 5.86317 5.93487 5.95332 5.97866 6.05628 6.08378 6.14638 6.19294 6.25234 6.34158 6.40798 6.52460 6.81682 6.93588 7.04837 7.28015 7.37174 7.50082 7.60301 7.78729 7.97578 8.10241 8.54120 9.14329 9.70146 11.19507 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018570 B = 0.006095 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.417686 B = 4592.458430 C = 5317.552078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.052 0.948 9 C 0.027 3.973 10 C -0.136 4.136 11 C 0.045 3.955 12 N -0.517 5.517 13 C 0.030 3.970 14 C -0.129 4.129 15 C -0.118 4.118 16 C 0.069 3.931 17 H 0.078 0.922 18 C 0.087 3.913 19 H 0.048 0.952 20 C -0.119 4.119 21 C -0.123 4.123 22 C 0.034 3.966 23 N -0.651 5.651 24 H 0.258 0.742 25 H 0.010 0.990 26 H 0.017 0.983 27 H 0.059 0.941 28 H 0.038 0.962 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.033 0.967 43 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.753 -15.949 -4.371 18.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.070 0.930 9 C -0.010 4.010 10 C -0.175 4.175 11 C -0.083 4.083 12 N -0.240 5.240 13 C -0.098 4.098 14 C -0.167 4.167 15 C -0.157 4.157 16 C -0.040 4.040 17 H 0.096 0.904 18 C -0.023 4.023 19 H 0.066 0.934 20 C -0.158 4.158 21 C -0.162 4.162 22 C -0.096 4.096 23 N -0.282 5.282 24 H 0.068 0.932 25 H 0.028 0.972 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.051 0.949 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.564 -15.632 -4.422 17.920 hybrid contribution 0.486 0.876 0.108 1.008 sum 8.050 -14.756 -4.314 17.354 Atomic orbital electron populations 1.69973 1.05987 1.26247 1.51426 1.25009 0.94803 0.99080 0.95590 0.86603 0.80142 0.84145 0.77515 1.19858 1.21049 1.21106 1.21311 0.92894 0.91282 1.49741 0.93011 1.18988 0.93896 0.91234 0.96911 1.22121 0.99858 0.95562 0.99928 1.22484 0.94907 0.88841 1.02077 1.64931 1.13546 1.43041 1.02514 1.22837 0.93843 1.00701 0.92452 1.22359 0.96868 1.00990 0.96490 1.22497 0.98186 0.99962 0.95048 1.22898 0.90551 0.99320 0.91216 0.90446 1.22317 0.91366 0.95304 0.93334 0.93385 1.22322 0.97475 1.01307 0.94688 1.22270 0.94905 1.01881 0.97099 1.22902 0.96630 0.99529 0.90499 1.63854 1.05575 1.55207 1.03527 0.93209 0.97161 0.96417 0.92210 0.94305 0.92193 0.89706 0.92825 0.91141 0.91733 0.91606 0.91501 0.91376 0.90972 0.91799 0.91031 0.91945 0.90245 0.94854 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.29 55.43 0.74 -26.94 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 7 C -0.51 -15.07 9.11 -34.44 -0.31 -15.39 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.03 0.73 4.97 -27.88 -0.14 0.59 16 10 C -0.14 -2.92 4.18 -26.73 -0.11 -3.03 16 11 C 0.04 0.81 4.95 -3.83 -0.02 0.79 16 12 N -0.52 -7.98 5.23 -222.62 -1.16 -9.15 16 13 C 0.03 0.43 6.44 -2.75 -0.02 0.41 16 14 C -0.13 -1.55 6.93 -25.37 -0.18 -1.73 16 15 C -0.12 -1.40 6.24 -24.87 -0.16 -1.56 16 16 C 0.07 0.98 1.78 -65.79 -0.12 0.87 16 17 H 0.08 1.32 5.30 -51.93 -0.28 1.05 16 18 C 0.09 1.14 2.90 -66.07 -0.19 0.95 16 19 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 20 C -0.12 -1.38 6.29 -25.35 -0.16 -1.54 16 21 C -0.12 -1.38 7.00 -25.35 -0.18 -1.56 16 22 C 0.03 0.41 7.47 -2.16 -0.02 0.39 16 23 N -0.65 -9.33 5.80 -102.73 -0.60 -9.92 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.01 0.29 8.14 -51.92 -0.42 -0.14 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 1.32 6.26 -51.93 -0.33 1.00 16 28 H 0.04 0.84 6.36 -51.93 -0.33 0.51 16 29 H 0.06 1.11 8.09 -51.93 -0.42 0.69 16 30 H 0.08 1.53 5.20 -51.93 -0.27 1.26 16 31 H 0.05 0.87 6.06 -51.93 -0.31 0.55 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.76 8.01 -51.93 -0.42 0.34 16 37 H 0.07 0.89 7.80 -51.93 -0.40 0.49 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.34 4.84 7.18 -39.29 -0.28 4.55 16 LS Contribution 322.86 15.07 4.87 4.87 Total: -1.00 -30.70 322.86 -10.52 -41.22 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.65 Total: 1.91 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -1.69 Total: -19.25 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -1.02 Total: -46.01 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.70 -10.52 -41.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051360005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.308 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds