Wall clock time and date at job start Mon Mar 30 2020 04:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86791 * 120.00350 * 2 1 4 4 H 1.48498 * 109.47384 * 239.99532 * 3 2 1 5 5 H 1.48498 * 109.47366 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47542 * 119.99689 * 3 2 1 7 7 C 1.37876 * 119.99450 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99727 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00538 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47591 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47557 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47156 * 179.97438 * 11 10 9 13 13 C 1.47436 * 111.00029 * 75.73354 * 12 11 10 14 14 C 1.54319 * 107.23358 * 123.25571 * 13 12 11 15 15 C 1.55139 * 103.02264 * 22.28183 * 14 13 12 16 16 C 1.47848 * 110.99541 * 196.57512 * 12 11 10 17 17 H 1.08994 * 110.37839 * 332.46556 * 16 12 11 18 18 C 1.53000 * 110.37276 * 94.81031 * 16 12 11 19 19 H 1.09002 * 109.90808 * 294.28505 * 18 16 12 20 20 C 1.53991 * 109.91993 * 55.39219 * 18 16 12 21 21 C 1.54592 * 105.14161 * 120.58056 * 20 18 16 22 22 C 1.54946 * 102.92342 * 21.95498 * 21 20 18 23 23 N 1.47901 * 109.91842 * 173.18791 * 18 16 12 24 24 H 0.97009 * 119.99744 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47419 * 59.98936 * 9 7 2 26 26 H 1.09007 * 109.46406 * 299.99017 * 9 7 2 27 27 H 1.08998 * 109.47331 * 59.99222 * 10 9 7 28 28 H 1.09002 * 109.46974 * 299.99577 * 10 9 7 29 29 H 1.09002 * 109.46991 * 300.00005 * 11 10 9 30 30 H 1.08998 * 109.47078 * 59.99505 * 11 10 9 31 31 H 1.08996 * 109.88986 * 242.65816 * 13 12 11 32 32 H 1.09001 * 109.89328 * 3.84971 * 13 12 11 33 33 H 1.09006 * 110.70689 * 140.66607 * 14 13 12 34 34 H 1.09007 * 110.71023 * 263.89932 * 14 13 12 35 35 H 1.08999 * 110.98822 * 82.43465 * 15 14 13 36 36 H 1.08989 * 110.99761 * 206.22030 * 15 14 13 37 37 H 1.09001 * 110.30549 * 239.49730 * 20 18 16 38 38 H 1.08993 * 110.30956 * 1.55971 * 20 18 16 39 39 H 1.08998 * 110.72516 * 140.31237 * 21 20 18 40 40 H 1.08997 * 110.72281 * 263.42344 * 21 20 18 41 41 H 1.08997 * 110.66325 * 81.01941 * 22 21 20 42 42 H 1.08996 * 110.66557 * 203.98517 * 22 21 20 43 43 H 1.00905 * 110.99907 * 335.83117 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9872 0.0012 12 7 2.4345 -6.1037 0.0006 13 6 3.0367 -6.2848 1.3341 14 6 2.7515 -7.7371 1.7711 15 6 2.4986 -8.4642 0.4242 16 6 1.7729 -7.3661 -0.3926 17 1 0.7148 -7.3369 -0.1329 18 6 1.9478 -7.6145 -1.8922 19 1 1.4185 -6.8489 -2.4595 20 6 3.4441 -7.5965 -2.2559 21 6 3.7295 -8.9905 -2.8603 22 6 2.3263 -9.4650 -3.3150 23 7 1.4273 -8.9531 -2.2452 24 1 -0.4850 0.8401 -0.0004 25 1 0.6244 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8905 27 1 2.8717 -3.6044 0.8904 28 1 2.8716 -3.6045 -0.8895 29 1 0.8536 -5.0446 0.8914 30 1 0.8530 -5.0451 -0.8885 31 1 4.1125 -6.1181 1.2810 32 1 2.5860 -5.5893 2.0421 33 1 3.6152 -8.1624 2.2824 34 1 1.8662 -7.7821 2.4054 35 1 3.4388 -8.7462 -0.0498 36 1 1.8580 -9.3347 0.5645 37 1 3.6453 -6.8171 -2.9908 38 1 4.0486 -7.4387 -1.3629 39 1 4.4044 -8.9106 -3.7125 40 1 4.1406 -9.6611 -2.1059 41 1 2.0644 -9.0247 -4.2771 42 1 2.2864 -10.5529 -3.3675 43 1 1.4340 -9.5666 -1.4441 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051360006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:53 Heat of formation + Delta-G solvation = -12.776091 kcal Electronic energy + Delta-G solvation = -19220.598048 eV Core-core repulsion = 16492.429732 eV Total energy + Delta-G solvation = -2728.168317 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.00694 -37.51248 -34.25262 -32.36917 -30.73580 -30.12628 -29.75813 -26.67947 -26.03288 -22.99820 -22.42054 -21.32986 -20.93711 -19.58431 -19.03789 -16.79292 -16.37429 -15.79318 -15.35579 -14.72295 -14.40665 -14.18319 -14.04731 -13.63947 -13.48236 -12.92992 -12.49239 -12.24406 -12.07352 -11.78533 -11.53635 -11.33022 -11.29967 -11.13215 -11.00491 -10.92696 -10.64741 -10.63050 -10.49662 -10.38654 -10.32934 -9.59718 -9.27120 -9.02628 -8.69808 -8.29972 -8.04648 -5.95436 -3.97331 3.36329 3.40337 3.43155 3.87944 4.38349 4.49655 4.59921 4.61831 4.78737 4.88305 4.92743 5.05979 5.24744 5.32437 5.40230 5.40337 5.52201 5.55525 5.65522 5.71181 5.77789 5.78921 5.84765 5.87528 5.99287 6.12647 6.13309 6.18408 6.24705 6.33586 6.39870 6.70274 6.74881 6.86906 7.16271 7.24496 7.35227 7.46243 7.73448 7.89065 8.05406 8.48975 9.09730 9.66337 11.16030 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.029848 B = 0.004227 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.864459 B = 6623.082300 C = 6993.585816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.100 4.100 11 C 0.052 3.948 12 N -0.521 5.521 13 C 0.044 3.956 14 C -0.141 4.141 15 C -0.131 4.131 16 C 0.068 3.932 17 H 0.058 0.942 18 C 0.088 3.912 19 H 0.085 0.915 20 C -0.133 4.133 21 C -0.161 4.161 22 C 0.042 3.958 23 N -0.671 5.671 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.012 0.988 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.031 0.969 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.808 -20.459 -1.282 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.138 4.138 11 C -0.075 4.075 12 N -0.245 5.245 13 C -0.084 4.084 14 C -0.179 4.179 15 C -0.169 4.169 16 C -0.041 4.041 17 H 0.076 0.924 18 C -0.022 4.022 19 H 0.103 0.897 20 C -0.172 4.172 21 C -0.200 4.200 22 C -0.088 4.088 23 N -0.299 5.299 24 H 0.070 0.930 25 H 0.033 0.967 26 H 0.031 0.969 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.447 -19.982 -2.069 20.814 hybrid contribution 0.612 0.670 1.104 1.429 sum 6.060 -19.312 -0.964 20.263 Atomic orbital electron populations 1.69962 1.06051 1.26605 1.51032 1.25023 0.94834 0.99203 0.95428 0.86666 0.79579 0.83197 0.78602 1.20242 1.21327 1.20295 1.21219 0.92989 0.91074 1.50328 0.92776 1.19074 0.94063 0.91470 0.97001 1.21584 0.98983 0.92566 1.00685 1.22486 0.93527 0.91355 1.00134 1.63438 1.32285 1.03276 1.25527 1.22826 1.00577 0.95244 0.89783 1.22777 1.01688 0.96309 0.97137 1.22816 1.00826 0.97444 0.95803 1.22716 0.97119 0.89872 0.94431 0.92369 1.22215 0.94075 0.91563 0.94388 0.89698 1.22682 0.96997 0.95973 1.01543 1.23158 0.98464 0.97679 1.00685 1.23140 0.89893 0.99242 0.96496 1.63055 1.50413 1.03906 1.12553 0.93022 0.96672 0.96929 0.93674 0.92742 0.95115 0.91492 0.90819 0.92215 0.91067 0.91625 0.90534 0.91261 0.91452 0.90083 0.91262 0.92008 0.90311 0.91193 0.85080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.10 -2.13 5.27 -26.73 -0.14 -2.27 16 11 C 0.05 0.93 4.59 -3.82 -0.02 0.91 16 12 N -0.52 -7.69 3.96 -223.39 -0.88 -8.57 16 13 C 0.04 0.58 6.30 -2.84 -0.02 0.56 16 14 C -0.14 -1.48 6.94 -24.91 -0.17 -1.66 16 15 C -0.13 -1.32 5.25 -24.59 -0.13 -1.45 16 16 C 0.07 0.85 2.29 -66.18 -0.15 0.70 16 17 H 0.06 0.80 7.81 -51.93 -0.41 0.39 16 18 C 0.09 1.09 3.51 -66.64 -0.23 0.85 16 19 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 20 C -0.13 -1.54 5.55 -25.38 -0.14 -1.68 16 21 C -0.16 -1.49 6.96 -24.87 -0.17 -1.66 16 22 C 0.04 0.39 7.55 -1.74 -0.01 0.38 16 23 N -0.67 -7.31 7.41 -102.92 -0.76 -8.08 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.04 0.95 7.57 -51.93 -0.39 0.56 16 28 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.03 0.55 7.77 -51.93 -0.40 0.15 16 30 H 0.07 1.22 7.99 -51.93 -0.41 0.80 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.86 7.18 -51.93 -0.37 0.49 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 35 H 0.08 0.76 6.16 -51.93 -0.32 0.44 16 36 H 0.07 0.60 7.54 -51.94 -0.39 0.21 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.01 6.17 -51.93 -0.32 0.69 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.53 7.99 -51.93 -0.41 0.12 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.33 3.22 6.85 -39.29 -0.27 2.95 16 LS Contribution 327.92 15.07 4.94 4.94 Total: -1.00 -30.00 327.92 -10.63 -40.63 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -7.90 Total: -0.57 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -1.74 Total: -18.66 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: -0.91 Total: -43.36 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.00 -10.63 -40.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051360006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.856 kcal (2) G-P(sol) polarization free energy of solvation -30.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds