Wall clock time and date at job start Mon Mar 30 2020 04:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00039 * 2 1 4 4 H 1.48501 * 109.47003 * 239.99837 * 3 2 1 5 5 H 1.48503 * 109.46797 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47580 * 119.99686 * 3 2 1 7 7 C 1.37875 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00159 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99592 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47043 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.46911 * 179.97438 * 11 10 9 13 13 C 1.47442 * 110.99853 * 65.33539 * 12 11 10 14 14 C 1.54320 * 107.23565 * 123.25955 * 13 12 11 15 15 C 1.55141 * 103.01641 * 22.28112 * 14 13 12 16 16 C 1.47839 * 110.99906 * 186.17621 * 12 11 10 17 17 H 1.08993 * 110.37610 * 332.46455 * 16 12 11 18 18 C 1.53000 * 110.37164 * 94.81013 * 16 12 11 19 19 H 1.08994 * 110.37293 * 56.11324 * 18 16 12 20 20 C 1.54381 * 110.41096 * 293.75964 * 18 16 12 21 21 C 1.54252 * 105.06616 * 217.37142 * 20 18 16 22 22 C 1.54389 * 105.05767 * 0.02562 * 21 20 18 23 23 N 1.48556 * 104.59511 * 23.85414 * 22 21 20 24 24 H 0.97000 * 119.99860 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47533 * 59.99766 * 9 7 2 26 26 H 1.09002 * 109.46999 * 299.99376 * 9 7 2 27 27 H 1.09001 * 109.46863 * 60.00048 * 10 9 7 28 28 H 1.08999 * 109.46976 * 300.00074 * 10 9 7 29 29 H 1.09002 * 109.47276 * 299.99594 * 11 10 9 30 30 H 1.09001 * 109.47354 * 60.00027 * 11 10 9 31 31 H 1.09005 * 109.88839 * 242.66573 * 13 12 11 32 32 H 1.08999 * 109.89097 * 3.85152 * 13 12 11 33 33 H 1.08998 * 110.70842 * 140.66110 * 14 13 12 34 34 H 1.09001 * 110.70370 * 263.72783 * 14 13 12 35 35 H 1.08997 * 110.99046 * 82.44243 * 15 14 13 36 36 H 1.08995 * 110.99026 * 206.22232 * 15 14 13 37 37 H 1.09001 * 110.32457 * 336.27564 * 20 18 16 38 38 H 1.09004 * 110.32125 * 98.47234 * 20 18 16 39 39 H 1.08995 * 110.32856 * 118.89472 * 21 20 18 40 40 H 1.09003 * 110.32465 * 241.00681 * 21 20 18 41 41 H 1.08998 * 110.41016 * 142.63365 * 22 21 20 42 42 H 1.08996 * 110.40977 * 264.95616 * 22 21 20 43 43 H 1.00901 * 111.00081 * 200.96037 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4349 -6.1036 0.0006 13 6 3.2158 -6.1319 1.2509 14 6 3.0054 -7.5206 1.8902 15 6 2.5762 -8.3985 0.6852 16 6 1.7361 -7.3980 -0.1473 17 1 0.7235 -7.3302 0.2499 18 6 1.7058 -7.8220 -1.6171 19 1 2.7172 -7.8628 -2.0212 20 6 0.8358 -6.8482 -2.4405 21 6 0.1058 -7.7351 -3.4700 22 6 0.5957 -9.1705 -3.1816 23 7 1.0328 -9.1388 -1.7622 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5566 0.8904 27 1 2.8720 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8894 29 1 0.8540 -5.0446 0.8914 30 1 0.8533 -5.0451 -0.8886 31 1 4.2728 -5.9810 1.0315 32 1 2.8607 -5.3545 1.9275 33 1 3.9345 -7.8898 2.3244 34 1 2.2179 -7.4830 2.6429 35 1 3.4447 -8.7417 0.1232 36 1 1.9680 -9.2414 1.0133 37 1 0.1153 -6.3459 -1.7950 38 1 1.4640 -6.1167 -2.9489 39 1 -0.9730 -7.6684 -3.3299 40 1 0.3744 -7.4379 -4.4838 41 1 -0.2182 -9.8835 -3.3130 42 1 1.4317 -9.4250 -3.8331 43 1 1.6709 -9.8947 -1.5633 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051360007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:56 Heat of formation + Delta-G solvation = -12.929019 kcal Electronic energy + Delta-G solvation = -19198.661295 eV Core-core repulsion = 16470.486347 eV Total energy + Delta-G solvation = -2728.174948 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.66418 -37.53661 -34.29205 -32.40868 -30.70413 -30.40661 -29.67317 -26.64165 -26.06151 -23.17899 -21.79256 -21.24904 -20.51674 -19.58368 -19.39682 -16.99741 -16.33196 -15.94443 -15.58734 -14.59552 -14.40768 -14.11604 -13.87132 -13.20090 -12.85725 -12.77078 -12.62039 -12.26556 -12.10952 -12.00379 -11.99812 -11.30928 -11.28252 -11.15432 -10.90326 -10.70626 -10.60261 -10.59048 -10.50328 -10.31863 -10.18142 -9.57237 -9.26986 -9.01154 -8.69271 -8.30090 -7.98089 -5.95601 -3.97524 3.36153 3.40147 3.42990 3.86275 4.48830 4.55219 4.60992 4.71111 4.88599 4.89683 5.01638 5.12099 5.23020 5.40050 5.44806 5.47378 5.57092 5.70125 5.72903 5.80280 5.83408 5.85945 5.93563 5.97480 5.99327 6.10138 6.12608 6.23632 6.27066 6.32161 6.44378 6.72187 6.78287 6.87644 7.16381 7.20322 7.38517 7.52820 7.73282 7.88811 8.05193 8.48815 9.09537 9.66180 11.15823 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024805 B = 0.004638 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.531978 B = 6035.457735 C = 6886.663620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.104 4.104 11 C 0.047 3.953 12 N -0.526 5.526 13 C 0.043 3.957 14 C -0.143 4.143 15 C -0.121 4.121 16 C 0.086 3.914 17 H 0.060 0.940 18 C 0.085 3.915 19 H 0.054 0.946 20 C -0.119 4.119 21 C -0.127 4.127 22 C 0.038 3.962 23 N -0.664 5.664 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.013 0.987 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.027 0.973 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.037 0.963 43 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.274 -19.443 -2.354 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.142 4.142 11 C -0.080 4.080 12 N -0.251 5.251 13 C -0.084 4.084 14 C -0.181 4.181 15 C -0.159 4.159 16 C -0.022 4.022 17 H 0.078 0.922 18 C -0.025 4.025 19 H 0.072 0.928 20 C -0.157 4.157 21 C -0.165 4.165 22 C -0.092 4.092 23 N -0.293 5.293 24 H 0.070 0.930 25 H 0.033 0.967 26 H 0.031 0.969 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.055 0.945 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.789 -19.059 -2.460 19.419 hybrid contribution 0.730 0.774 0.198 1.082 sum 3.519 -18.285 -2.262 18.758 Atomic orbital electron populations 1.69958 1.06045 1.26603 1.51029 1.25019 0.94827 0.99184 0.95422 0.86673 0.79587 0.83220 0.78602 1.20251 1.21325 1.20291 1.21218 0.92987 0.91082 1.50339 0.92784 1.19064 0.94030 0.91423 0.97007 1.21648 0.99066 0.92794 1.00673 1.22602 0.93913 0.91150 1.00383 1.63399 1.24775 1.02157 1.34746 1.22797 0.99216 0.96129 0.90307 1.22796 1.01432 0.96143 0.97771 1.22678 0.99457 0.97593 0.96179 1.22390 0.96811 0.89143 0.93905 0.92245 1.22329 0.96164 0.88950 0.95026 0.92759 1.22407 0.98747 0.97439 0.97136 1.22327 1.00866 0.94184 0.99135 1.22858 0.99353 0.97891 0.89058 1.63569 1.40487 1.03896 1.21304 0.93023 0.96673 0.96912 0.93603 0.92750 0.95478 0.90676 0.90905 0.92112 0.91186 0.91697 0.91364 0.90947 0.90729 0.90792 0.91241 0.91562 0.90485 0.94464 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.10 -2.22 5.11 -26.73 -0.14 -2.35 16 11 C 0.05 0.84 4.38 -3.82 -0.02 0.82 16 12 N -0.53 -8.08 4.77 -223.38 -1.06 -9.15 16 13 C 0.04 0.61 6.17 -2.84 -0.02 0.60 16 14 C -0.14 -1.63 6.94 -24.91 -0.17 -1.81 16 15 C -0.12 -1.33 6.18 -24.59 -0.15 -1.49 16 16 C 0.09 1.15 2.18 -66.19 -0.14 1.00 16 17 H 0.06 0.88 7.79 -51.93 -0.40 0.48 16 18 C 0.09 1.05 2.88 -66.05 -0.19 0.86 16 19 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 20 C -0.12 -1.56 5.35 -25.35 -0.14 -1.70 16 21 C -0.13 -1.38 7.00 -25.35 -0.18 -1.56 16 22 C 0.04 0.37 7.47 -2.18 -0.02 0.35 16 23 N -0.66 -7.09 7.07 -102.73 -0.73 -7.81 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.97 6.84 -51.93 -0.36 0.61 16 28 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.03 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.07 1.35 5.16 -51.93 -0.27 1.08 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.93 6.68 -51.93 -0.35 0.59 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.72 8.06 -51.93 -0.42 0.30 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.08 6.10 -51.93 -0.32 0.77 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.33 2.99 8.82 -39.29 -0.35 2.65 16 LS Contribution 328.60 15.07 4.95 4.95 Total: -1.00 -30.11 328.60 -10.75 -40.86 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -7.91 Total: -0.63 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -1.71 Total: -18.56 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -1.05 Total: -43.59 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.11 -10.75 -40.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051360007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.932 kcal (2) G-P(sol) polarization free energy of solvation -30.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds