Wall clock time and date at job start Mon Mar 30 2020 04:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00039 * 2 1 4 4 H 1.48501 * 109.47003 * 239.99837 * 3 2 1 5 5 H 1.48503 * 109.46797 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47580 * 119.99686 * 3 2 1 7 7 C 1.37875 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00159 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99592 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47043 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.46911 * 179.97438 * 11 10 9 13 13 C 1.47442 * 110.99853 * 65.33539 * 12 11 10 14 14 C 1.54320 * 107.23565 * 123.25955 * 13 12 11 15 15 C 1.55141 * 103.01641 * 22.28112 * 14 13 12 16 16 C 1.47839 * 110.99906 * 186.17621 * 12 11 10 17 17 H 1.08993 * 110.37610 * 332.46455 * 16 12 11 18 18 C 1.53000 * 110.37164 * 94.81013 * 16 12 11 19 19 H 1.08994 * 110.37293 * 56.11324 * 18 16 12 20 20 C 1.54381 * 110.41096 * 293.75964 * 18 16 12 21 21 C 1.54252 * 105.06616 * 217.37142 * 20 18 16 22 22 C 1.54389 * 105.05767 * 0.02562 * 21 20 18 23 23 N 1.48556 * 104.59511 * 23.85414 * 22 21 20 24 24 H 0.97000 * 119.99860 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47533 * 59.99766 * 9 7 2 26 26 H 1.09002 * 109.46999 * 299.99376 * 9 7 2 27 27 H 1.09001 * 109.46863 * 60.00048 * 10 9 7 28 28 H 1.08999 * 109.46976 * 300.00074 * 10 9 7 29 29 H 1.09002 * 109.47276 * 299.99594 * 11 10 9 30 30 H 1.09001 * 109.47354 * 60.00027 * 11 10 9 31 31 H 1.09005 * 109.88839 * 242.66573 * 13 12 11 32 32 H 1.08999 * 109.89097 * 3.85152 * 13 12 11 33 33 H 1.08998 * 110.70842 * 140.66110 * 14 13 12 34 34 H 1.09001 * 110.70370 * 263.72783 * 14 13 12 35 35 H 1.08997 * 110.99046 * 82.44243 * 15 14 13 36 36 H 1.08995 * 110.99026 * 206.22232 * 15 14 13 37 37 H 1.09001 * 110.32457 * 336.27564 * 20 18 16 38 38 H 1.09004 * 110.32125 * 98.47234 * 20 18 16 39 39 H 1.08995 * 110.32856 * 118.89472 * 21 20 18 40 40 H 1.09003 * 110.32465 * 241.00681 * 21 20 18 41 41 H 1.08998 * 110.41016 * 142.63365 * 22 21 20 42 42 H 1.08996 * 110.40977 * 264.95616 * 22 21 20 43 43 H 1.00901 * 111.00081 * 200.96037 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4349 -6.1036 0.0006 13 6 3.2158 -6.1319 1.2509 14 6 3.0054 -7.5206 1.8902 15 6 2.5762 -8.3985 0.6852 16 6 1.7361 -7.3980 -0.1473 17 1 0.7235 -7.3302 0.2499 18 6 1.7058 -7.8220 -1.6171 19 1 2.7172 -7.8628 -2.0212 20 6 0.8358 -6.8482 -2.4405 21 6 0.1058 -7.7351 -3.4700 22 6 0.5957 -9.1705 -3.1816 23 7 1.0328 -9.1388 -1.7622 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5566 0.8904 27 1 2.8720 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8894 29 1 0.8540 -5.0446 0.8914 30 1 0.8533 -5.0451 -0.8886 31 1 4.2728 -5.9810 1.0315 32 1 2.8607 -5.3545 1.9275 33 1 3.9345 -7.8898 2.3244 34 1 2.2179 -7.4830 2.6429 35 1 3.4447 -8.7417 0.1232 36 1 1.9680 -9.2414 1.0133 37 1 0.1153 -6.3459 -1.7950 38 1 1.4640 -6.1167 -2.9489 39 1 -0.9730 -7.6684 -3.3299 40 1 0.3744 -7.4379 -4.4838 41 1 -0.2182 -9.8835 -3.3130 42 1 1.4317 -9.4250 -3.8331 43 1 1.6709 -9.8947 -1.5633 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051360007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:56 Heat of formation + Delta-G solvation = -32.854465 kcal Electronic energy + Delta-G solvation = -19199.525328 eV Core-core repulsion = 16470.486347 eV Total energy + Delta-G solvation = -2729.038981 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.74451 -38.54803 -36.13712 -34.26178 -31.86444 -31.58578 -30.90090 -27.91872 -27.61186 -24.89078 -22.82531 -22.70915 -21.49123 -20.92496 -20.63295 -18.51472 -17.92473 -16.99701 -16.89712 -16.42127 -15.78644 -15.37765 -15.01335 -14.49578 -14.25962 -14.00327 -13.83441 -13.63450 -13.51190 -13.37700 -12.97113 -12.85450 -12.78592 -12.53256 -12.29891 -12.21999 -12.08872 -11.89879 -11.57926 -11.48825 -11.38918 -11.35548 -11.23169 -11.03750 -10.55493 -9.54250 -9.23645 -8.20405 -6.31907 1.39174 1.42721 1.50700 2.40504 2.80819 3.12417 3.55463 3.61475 3.71952 3.94981 3.96686 4.04310 4.17026 4.23413 4.27514 4.37690 4.47391 4.55573 4.60913 4.73151 4.75679 4.86535 4.87920 4.96484 4.97802 5.00064 5.04652 5.10536 5.12071 5.15895 5.21036 5.23742 5.29412 5.36801 5.50828 5.72845 5.82048 5.84403 6.13219 6.14859 6.27582 6.50089 6.84296 7.37316 8.91435 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024805 B = 0.004638 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.531978 B = 6035.457735 C = 6886.663620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.087 4.087 11 C 0.062 3.938 12 N -0.530 5.530 13 C 0.036 3.964 14 C -0.136 4.136 15 C -0.110 4.110 16 C 0.084 3.916 17 H 0.041 0.959 18 C 0.092 3.908 19 H 0.054 0.946 20 C -0.124 4.124 21 C -0.127 4.127 22 C 0.041 3.959 23 N -0.666 5.666 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.013 1.013 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.017 0.983 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.754 -20.760 -2.492 21.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.125 4.125 11 C -0.066 4.066 12 N -0.254 5.254 13 C -0.091 4.091 14 C -0.174 4.174 15 C -0.148 4.148 16 C -0.024 4.024 17 H 0.060 0.940 18 C -0.018 4.018 19 H 0.072 0.928 20 C -0.163 4.163 21 C -0.165 4.165 22 C -0.088 4.088 23 N -0.297 5.297 24 H 0.073 0.927 25 H 0.009 0.991 26 H 0.006 0.994 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.282 -20.406 -2.597 21.011 hybrid contribution 0.229 1.173 0.234 1.218 sum 4.511 -19.233 -2.363 19.896 Atomic orbital electron populations 1.70096 1.07840 1.27850 1.51611 1.25992 0.95773 1.03382 0.94619 0.85492 0.78288 0.77996 0.79224 1.19142 1.20675 1.19132 1.21640 0.93466 0.92353 1.50700 0.92327 1.18953 0.94354 0.93192 0.94528 1.21381 0.97864 0.92755 1.00460 1.22286 0.93765 0.90852 0.99741 1.63371 1.24097 1.02283 1.35670 1.22881 0.99038 0.97581 0.89630 1.22767 1.02592 0.94277 0.97776 1.22653 0.99588 0.97154 0.95436 1.22444 0.96161 0.88698 0.95126 0.94046 1.22182 0.95947 0.89658 0.93996 0.92805 1.22379 0.98484 0.97811 0.97597 1.22341 1.00485 0.94736 0.98909 1.22893 1.00237 0.97060 0.88608 1.63528 1.40599 1.03373 1.22177 0.92745 0.99126 0.99427 0.93397 0.93089 0.96516 0.91097 0.90380 0.93920 0.88907 0.91804 0.90122 0.89366 0.92955 0.92222 0.91496 0.90605 0.89136 0.93096 0.83793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.19 13.29 21.45 0.28 -57.90 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.54 -32.08 9.11 25.60 0.23 -31.84 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.51 4.97 29.85 0.15 1.66 16 10 C -0.09 -3.82 5.11 30.60 0.16 -3.67 16 11 C 0.06 2.30 4.38 86.30 0.38 2.68 16 12 N -0.53 -16.24 4.77 -860.64 -4.10 -20.34 16 13 C 0.04 1.00 6.17 86.65 0.53 1.54 16 14 C -0.14 -2.81 6.94 31.78 0.22 -2.59 16 15 C -0.11 -2.15 6.18 31.98 0.20 -1.95 16 16 C 0.08 2.17 2.18 45.39 0.10 2.27 16 17 H 0.04 1.23 7.79 -2.39 -0.02 1.21 16 18 C 0.09 2.18 2.88 45.06 0.13 2.31 16 19 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 20 C -0.12 -3.30 5.35 31.49 0.17 -3.13 16 21 C -0.13 -2.65 7.00 31.49 0.22 -2.43 16 22 C 0.04 0.70 7.47 86.45 0.65 1.35 16 23 N -0.67 -12.84 7.07 -478.92 -3.39 -16.22 16 24 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 25 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 26 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 27 H 0.05 2.07 6.84 -2.39 -0.02 2.05 16 28 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.02 0.65 8.09 -2.39 -0.02 0.63 16 30 H 0.07 2.70 5.16 -2.39 -0.01 2.69 16 31 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.04 1.32 6.68 -2.39 -0.02 1.30 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.41 8.06 -2.39 -0.02 1.39 16 36 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.05 1.60 6.10 -2.39 -0.01 1.58 16 38 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.35 5.19 8.82 -89.69 -0.79 4.40 16 Total: -1.00 -65.50 328.60 -1.42 -66.92 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.17 Total: 13.70 kcal Atomic # 6 Polarization: -36.94 SS G_CDS: 3.59 Total: -33.35 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -7.20 Total: -94.46 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -65.50 -1.42 -66.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051360007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.061 kcal (2) G-P(sol) polarization free energy of solvation -65.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds