Wall clock time and date at job start Mon Mar 30 2020 04:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99994 * 2 1 4 4 H 1.48498 * 109.47400 * 270.00292 * 3 2 1 5 5 H 1.48500 * 109.47114 * 30.00328 * 3 2 1 6 6 H 1.48498 * 109.46749 * 150.00346 * 3 2 1 7 7 C 1.37877 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00343 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99764 * 179.97438 * 7 2 1 10 10 N 1.46894 * 109.46977 * 185.00474 * 9 7 2 11 11 C 1.46846 * 111.00242 * 295.12455 * 10 9 7 12 12 C 1.53033 * 109.51484 * 185.84632 * 11 10 9 13 13 C 1.53121 * 109.28111 * 300.80215 * 12 11 10 14 14 C 1.52995 * 109.52411 * 177.57205 * 13 12 11 15 15 N 1.46898 * 109.46976 * 65.32814 * 14 13 12 16 16 C 1.48530 * 111.00080 * 52.60563 * 15 14 13 17 17 C 1.54938 * 103.22816 * 159.71740 * 16 15 14 18 18 C 1.54596 * 102.92247 * 322.58630 * 17 16 15 19 19 C 1.47911 * 110.99747 * 169.99833 * 15 14 13 20 20 C 1.53114 * 109.14859 * 57.67022 * 13 12 11 21 21 C 1.46846 * 111.00211 * 59.33626 * 10 9 7 22 22 H 0.97008 * 119.99994 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47212 * 65.00476 * 9 7 2 24 24 H 1.09001 * 109.47341 * 305.00751 * 9 7 2 25 25 H 1.09006 * 109.46109 * 305.85693 * 11 10 9 26 26 H 1.08998 * 109.46522 * 65.83161 * 11 10 9 27 27 H 1.09000 * 109.50569 * 60.75821 * 12 11 10 28 28 H 1.09007 * 109.50091 * 180.87223 * 12 11 10 29 29 H 1.09001 * 109.58250 * 297.74062 * 13 12 11 30 30 H 1.08997 * 109.46957 * 185.33186 * 14 13 12 31 31 H 1.08999 * 109.47208 * 305.32631 * 14 13 12 32 32 H 1.09004 * 110.66513 * 278.15216 * 16 15 14 33 33 H 1.08997 * 110.66615 * 41.28345 * 16 15 14 34 34 H 1.08996 * 110.72582 * 204.22793 * 17 16 15 35 35 H 1.09005 * 110.72419 * 80.94298 * 17 16 15 36 36 H 1.09004 * 110.30964 * 263.04223 * 18 17 16 37 37 H 1.09000 * 110.39539 * 140.91917 * 18 17 16 38 38 H 1.08999 * 109.91483 * 333.50897 * 19 15 14 39 39 H 1.09000 * 109.91592 * 94.60387 * 19 15 14 40 40 H 1.09001 * 109.50637 * 182.40198 * 20 13 12 41 41 H 1.09005 * 109.53738 * 62.30306 * 20 13 12 42 42 H 1.09001 * 109.46043 * 294.17594 * 21 10 9 43 43 H 1.09001 * 109.46400 * 54.14774 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5737 -0.1224 11 6 3.6282 -3.3699 1.0538 12 6 4.2759 -4.7532 0.9610 13 6 3.8034 -5.4480 -0.3191 14 6 4.4944 -6.8069 -0.4482 15 7 4.0569 -7.6845 0.6456 16 6 2.5747 -7.7506 0.7147 17 6 2.3146 -9.0559 1.5078 18 6 3.4207 -10.0025 0.9880 19 6 4.5126 -9.0742 0.4246 20 6 4.1610 -4.5754 -1.5254 21 6 3.5168 -3.1970 -1.3607 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.7601 0.9303 24 1 3.8746 -0.6044 -0.8429 25 1 3.9735 -2.8669 1.9571 26 1 2.5442 -3.4781 1.0903 27 1 5.3605 -4.6465 0.9383 28 1 3.9865 -5.3493 1.8265 29 1 2.7235 -5.5906 -0.2801 30 1 4.2309 -7.2590 -1.4043 31 1 5.5747 -6.6717 -0.3956 32 1 2.1758 -6.8890 1.2502 33 1 2.1455 -7.8159 -0.2851 34 1 1.3264 -9.4554 1.2797 35 1 2.4249 -8.8850 2.5787 36 1 3.0285 -10.6464 0.2007 37 1 3.8200 -10.6045 1.8043 38 1 4.6417 -9.2574 -0.6420 39 1 5.4541 -9.2437 0.9470 40 1 3.7894 -5.0442 -2.4366 41 1 5.2437 -4.4659 -1.5879 42 1 2.4333 -3.3059 -1.3128 43 1 3.7814 -2.5687 -2.2112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051907715.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:57 Heat of formation + Delta-G solvation = -5.636606 kcal Electronic energy + Delta-G solvation = -19411.955063 eV Core-core repulsion = 16684.096337 eV Total energy + Delta-G solvation = -2727.858726 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.42360 -37.90975 -34.43367 -32.38954 -31.01005 -30.15350 -28.95541 -27.59575 -25.25179 -22.66785 -22.41863 -21.35122 -20.84123 -20.05807 -18.88162 -16.77488 -16.12826 -15.87929 -15.12604 -14.37923 -14.17061 -14.13349 -13.99313 -13.49312 -13.05062 -12.96909 -12.63987 -12.32615 -12.17491 -11.70863 -11.56089 -11.53426 -11.37597 -11.20044 -11.10186 -10.78432 -10.69193 -10.49719 -10.33294 -10.23455 -9.92731 -9.71051 -9.68242 -9.38042 -8.57327 -8.40016 -7.11308 -6.08820 -4.08055 3.29079 3.36697 3.41468 3.97488 4.41621 4.53916 4.61198 4.82921 4.97613 5.16137 5.17920 5.20828 5.25431 5.37123 5.41004 5.54498 5.64286 5.69141 5.73331 5.80571 5.88123 5.92298 5.94727 6.02610 6.08524 6.15311 6.21604 6.38314 6.51177 6.55613 6.58790 6.74409 6.84988 6.89189 6.99379 7.01486 7.08746 7.12602 7.60731 8.13655 8.22109 8.47854 8.94176 9.54774 11.04252 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.039276 B = 0.004522 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.726372 B = 6191.093028 C = 6506.075433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.549 4.549 8 H 0.074 0.926 9 C 0.154 3.846 10 N -0.534 5.534 11 C 0.060 3.940 12 C -0.099 4.099 13 C -0.087 4.087 14 C 0.054 3.946 15 N -0.514 5.514 16 C 0.033 3.967 17 C -0.125 4.125 18 C -0.131 4.131 19 C 0.034 3.966 20 C -0.110 4.110 21 C 0.065 3.935 22 H 0.263 0.737 23 H 0.026 0.974 24 H 0.024 0.976 25 H 0.062 0.938 26 H 0.039 0.961 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.041 0.959 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.043 0.957 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.884 -17.097 0.142 18.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.587 4.587 8 H 0.092 0.908 9 C 0.027 3.973 10 N -0.258 5.258 11 C -0.068 4.068 12 C -0.137 4.137 13 C -0.105 4.105 14 C -0.074 4.074 15 N -0.238 5.238 16 C -0.095 4.095 17 C -0.163 4.163 18 C -0.169 4.169 19 C -0.094 4.094 20 C -0.148 4.148 21 C -0.064 4.064 22 H 0.073 0.927 23 H 0.045 0.955 24 H 0.042 0.958 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.481 -16.740 0.593 18.776 hybrid contribution -0.967 0.650 -0.839 1.436 sum 7.514 -16.090 -0.246 17.760 Atomic orbital electron populations 1.69934 1.06377 1.26941 1.50666 1.24979 0.94688 0.99226 0.94234 0.86786 0.80424 0.83554 0.78583 1.20238 1.21355 1.18854 1.21713 0.90783 0.94609 1.51645 0.90809 1.20161 0.94510 0.86032 0.96632 1.62368 1.58650 1.03482 1.01319 1.21915 0.98379 0.92756 0.93775 1.21539 1.00371 0.95244 0.96513 1.21269 0.99760 0.92928 0.96584 1.22387 1.00459 0.93378 0.91137 1.64791 1.09068 1.07127 1.42798 1.23254 0.88712 0.98447 0.99040 1.22489 0.98126 0.94973 1.00689 1.22388 0.96123 0.97818 1.00551 1.22867 0.98821 0.88601 0.99073 1.21640 1.01054 0.95762 0.96351 1.21827 0.97988 0.93286 0.93305 0.92744 0.95549 0.95798 0.91990 0.94309 0.92164 0.91633 0.91458 0.95163 0.90728 0.89525 0.93860 0.91258 0.90734 0.91828 0.91208 0.94114 0.90585 0.92777 0.91831 0.93922 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.66 27.37 -169.99 -4.65 17.01 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.29 6.69 56.52 0.38 -5.91 16 7 C -0.55 -15.43 8.27 -34.44 -0.28 -15.72 16 8 H 0.07 2.25 6.10 -52.49 -0.32 1.93 16 9 C 0.15 3.77 4.19 -4.98 -0.02 3.75 16 10 N -0.53 -11.38 4.86 -236.12 -1.15 -12.52 16 11 C 0.06 1.19 5.12 -3.84 -0.02 1.17 16 12 C -0.10 -1.58 5.24 -26.65 -0.14 -1.72 16 13 C -0.09 -1.28 1.94 -90.50 -0.18 -1.45 16 14 C 0.05 0.68 4.42 -3.83 -0.02 0.66 16 15 N -0.51 -6.21 4.92 -230.46 -1.13 -7.35 16 16 C 0.03 0.39 5.09 -1.90 -0.01 0.38 16 17 C -0.12 -1.20 7.06 -24.87 -0.18 -1.38 16 18 C -0.13 -1.14 6.93 -25.38 -0.18 -1.32 16 19 C 0.03 0.35 6.70 -2.75 -0.02 0.33 16 20 C -0.11 -1.70 5.38 -26.65 -0.14 -1.84 16 21 C 0.06 1.27 5.03 -3.84 -0.02 1.25 16 22 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 23 H 0.03 0.66 7.49 -51.93 -0.39 0.27 16 24 H 0.02 0.59 7.29 -51.93 -0.38 0.21 16 25 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 26 H 0.04 0.86 6.86 -51.93 -0.36 0.50 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 1.01 7.84 -51.93 -0.41 0.60 16 29 H 0.07 1.07 6.52 -51.93 -0.34 0.73 16 30 H 0.03 0.37 7.81 -51.93 -0.41 -0.04 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.12 7.56 -51.93 -0.39 0.72 16 33 H 0.04 0.51 8.01 -51.93 -0.42 0.10 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.04 0.40 7.57 -51.93 -0.39 0.00 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.04 0.95 6.73 -51.93 -0.35 0.60 16 43 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 LS Contribution 320.39 15.07 4.83 4.83 Total: -1.00 -29.71 320.39 -10.58 -40.28 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -7.95 Total: -1.49 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -1.30 Total: -13.93 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -1.51 Total: -46.70 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.65 Total: 17.01 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.71 -10.58 -40.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051907715.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.647 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds