Wall clock time and date at job start Mon Mar 30 2020 04:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 179.97438 * 10 9 7 12 12 C 1.46839 * 111.00222 * 294.21135 * 11 10 9 13 13 C 1.53034 * 109.52552 * 174.16216 * 12 11 10 14 14 C 1.53123 * 109.28182 * 59.17780 * 13 12 11 15 15 N 1.46887 * 109.52760 * 182.44295 * 14 13 12 16 16 C 1.48529 * 111.00226 * 177.29053 * 15 14 13 17 17 C 1.54944 * 103.23106 * 159.72088 * 16 15 14 18 18 C 1.54590 * 102.91793 * 322.58538 * 17 16 15 19 19 C 1.47907 * 111.00150 * 294.68574 * 15 14 13 20 20 C 1.53120 * 109.16070 * 302.35293 * 14 13 12 21 21 C 1.46849 * 110.99649 * 169.99929 * 11 10 9 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.09006 * 109.46266 * 294.17473 * 12 11 10 28 28 H 1.09002 * 109.46276 * 54.14664 * 12 11 10 29 29 H 1.09006 * 109.50444 * 299.24199 * 13 12 11 30 30 H 1.09003 * 109.50687 * 179.12283 * 13 12 11 31 31 H 1.09005 * 109.51783 * 62.25186 * 14 13 12 32 32 H 1.09006 * 110.66505 * 278.15321 * 16 15 14 33 33 H 1.08998 * 110.67357 * 41.28112 * 16 15 14 34 34 H 1.08997 * 110.72074 * 204.22349 * 17 16 15 35 35 H 1.09002 * 110.71918 * 80.94251 * 17 16 15 36 36 H 1.09002 * 110.31054 * 263.03823 * 18 17 16 37 37 H 1.09003 * 110.31090 * 140.87229 * 18 17 16 38 38 H 1.08999 * 109.91209 * 333.50514 * 19 15 14 39 39 H 1.08998 * 109.91786 * 94.60690 * 19 15 14 40 40 H 1.09005 * 109.50142 * 297.71204 * 20 14 13 41 41 H 1.08993 * 109.53791 * 177.61458 * 20 14 13 42 42 H 1.08991 * 109.46839 * 305.85721 * 21 11 10 43 43 H 1.09001 * 109.46094 * 65.83266 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 0.7612 -5.1086 1.2517 13 6 -0.1030 -6.3680 1.1587 14 6 0.7968 -7.5813 0.9078 15 7 -0.0320 -8.7849 0.7593 16 6 0.8046 -9.9725 0.4498 17 6 -0.1064 -11.1613 0.8470 18 6 -0.8243 -10.6388 2.1125 19 6 -0.7340 -9.1042 2.0215 20 6 1.6021 -7.3532 -0.3744 21 6 2.4169 -6.0651 -0.2369 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8905 27 1 1.4595 -5.2079 2.0829 28 1 0.1222 -4.2409 1.4161 29 1 -0.8109 -6.2638 0.3363 30 1 -0.6475 -6.5057 2.0929 31 1 1.4788 -7.7090 1.7485 32 1 1.0427 -10.0088 -0.6133 33 1 1.7151 -9.9686 1.0490 34 1 0.4902 -12.0437 1.0785 35 1 -0.8255 -11.3769 0.0568 36 1 -0.3175 -10.9951 3.0093 37 1 -1.8669 -10.9569 2.1145 38 1 -0.1698 -8.7146 2.8688 39 1 -1.7339 -8.6704 2.0103 40 1 0.9211 -7.2643 -1.2209 41 1 2.2758 -8.1946 -0.5362 42 1 2.9804 -5.8923 -1.1537 43 1 3.1073 -6.1599 0.6012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051952382.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:51 Heat of formation + Delta-G solvation = -7.129691 kcal Electronic energy + Delta-G solvation = -19065.334841 eV Core-core repulsion = 16337.411370 eV Total energy + Delta-G solvation = -2727.923471 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.70792 -37.75673 -34.20388 -32.70698 -30.86253 -30.35313 -28.88125 -28.23759 -24.66210 -23.19446 -22.75844 -21.19389 -20.58836 -19.97551 -19.43531 -16.61864 -16.16280 -16.02863 -14.93270 -14.65445 -14.45930 -14.14798 -13.80314 -13.74378 -13.35656 -13.16360 -12.56178 -12.33133 -12.12388 -11.93856 -11.81684 -11.50051 -11.24131 -11.07285 -11.02021 -10.90801 -10.84549 -10.74399 -10.51597 -10.24929 -10.12584 -9.75176 -9.28864 -9.06835 -8.46709 -8.30511 -7.65303 -5.97076 -3.99275 3.32638 3.39951 3.43966 3.86276 4.40555 4.48946 4.50656 4.58307 4.76778 4.98703 5.05809 5.11432 5.31159 5.35691 5.38833 5.48738 5.52715 5.58584 5.63266 5.65565 5.76346 5.80939 5.81767 5.86248 5.95584 5.99732 6.04475 6.16219 6.29779 6.36473 6.42462 6.55991 6.63417 6.84788 7.01182 7.08376 7.56831 7.64513 7.84715 7.94318 8.12382 8.46826 9.08293 9.64185 11.14310 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.056105 B = 0.003687 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.948686 B = 7592.153368 C = 7907.055632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.027 3.973 10 C 0.063 3.937 11 N -0.537 5.537 12 C 0.057 3.943 13 C -0.105 4.105 14 C 0.079 3.921 15 N -0.512 5.512 16 C 0.034 3.966 17 C -0.124 4.124 18 C -0.131 4.131 19 C 0.035 3.965 20 C -0.106 4.106 21 C 0.057 3.943 22 H 0.260 0.740 23 H 0.025 0.975 24 H 0.017 0.983 25 H 0.060 0.940 26 H 0.018 0.982 27 H 0.022 0.978 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.082 0.918 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.579 -21.090 3.290 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.063 4.063 11 N -0.262 5.262 12 C -0.072 4.072 13 C -0.143 4.143 14 C -0.030 4.030 15 N -0.236 5.236 16 C -0.094 4.094 17 C -0.162 4.162 18 C -0.170 4.170 19 C -0.093 4.093 20 C -0.144 4.144 21 C -0.072 4.072 22 H 0.069 0.931 23 H 0.043 0.957 24 H 0.035 0.965 25 H 0.079 0.921 26 H 0.036 0.964 27 H 0.040 0.960 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -0.270 -20.841 2.492 20.991 hybrid contribution 1.669 0.839 1.412 2.341 sum 1.399 -20.002 3.904 20.427 Atomic orbital electron populations 1.69981 1.05998 1.26424 1.50793 1.24995 0.94829 0.99157 0.95373 0.86551 0.80082 0.83883 0.77561 1.19803 1.20981 1.21072 1.21241 0.93000 0.91100 1.50650 0.92796 1.19105 0.93985 0.90088 0.97805 1.22319 0.96720 0.88458 0.98833 1.62014 1.27372 1.02320 1.34446 1.22087 0.96773 0.98247 0.90080 1.21618 0.98063 0.92672 1.01958 1.21900 0.93665 0.90343 0.97043 1.64815 1.25965 1.02412 1.30402 1.23215 0.94906 0.89904 1.01330 1.22480 0.98690 0.97261 0.97756 1.22403 1.01226 0.95253 0.98080 1.22848 0.99992 0.95207 0.91207 1.21635 0.98431 0.96417 0.97957 1.22031 0.93969 0.91057 1.00173 0.93073 0.95660 0.96488 0.92116 0.96417 0.96021 0.89244 0.90150 0.92264 0.94734 0.89967 0.94071 0.91350 0.90741 0.91793 0.91090 0.93953 0.90267 0.90178 0.92341 0.90892 0.95982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.73 4.90 -27.88 -0.14 0.59 16 10 C 0.06 1.37 4.90 -3.82 -0.02 1.36 16 11 N -0.54 -10.08 4.66 -234.67 -1.09 -11.17 16 12 C 0.06 0.99 5.29 -3.84 -0.02 0.97 16 13 C -0.10 -1.55 5.32 -26.65 -0.14 -1.69 16 14 C 0.08 1.04 1.72 -67.59 -0.12 0.92 16 15 N -0.51 -6.08 5.11 -222.35 -1.14 -7.22 16 16 C 0.03 0.34 5.32 -1.90 -0.01 0.33 16 17 C -0.12 -1.02 7.06 -24.87 -0.18 -1.20 16 18 C -0.13 -1.10 6.93 -25.38 -0.18 -1.28 16 19 C 0.04 0.37 5.61 -2.75 -0.02 0.35 16 20 C -0.11 -1.42 5.10 -26.65 -0.14 -1.55 16 21 C 0.06 0.87 5.46 -3.83 -0.02 0.85 16 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.02 0.47 6.43 -51.93 -0.33 0.14 16 25 H 0.06 1.30 7.99 -51.93 -0.41 0.88 16 26 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 1.76 6.21 -51.93 -0.32 1.44 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.06 0.79 7.45 -51.93 -0.39 0.41 16 31 H 0.03 0.47 7.96 -51.93 -0.41 0.06 16 32 H 0.08 0.79 7.71 -51.93 -0.40 0.39 16 33 H 0.04 0.41 8.02 -51.93 -0.42 -0.01 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.04 0.45 7.65 -51.93 -0.40 0.05 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.06 0.67 7.03 -51.93 -0.37 0.31 16 42 H 0.07 1.09 8.02 -51.93 -0.42 0.67 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 326.16 15.07 4.92 4.92 Total: -1.00 -30.08 326.16 -11.03 -41.12 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -8.06 Total: -4.06 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -1.38 Total: -14.03 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: -1.49 Total: -44.77 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.08 -11.03 -41.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051952382.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.986 kcal (2) G-P(sol) polarization free energy of solvation -30.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds