Wall clock time and date at job start Mon Mar 30 2020 04:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 179.97438 * 10 9 7 12 12 C 1.46839 * 111.00222 * 294.21135 * 11 10 9 13 13 C 1.53034 * 109.52552 * 174.16216 * 12 11 10 14 14 C 1.53123 * 109.28182 * 59.17780 * 13 12 11 15 15 N 1.46887 * 109.52760 * 182.44295 * 14 13 12 16 16 C 1.48529 * 111.00226 * 177.29053 * 15 14 13 17 17 C 1.54944 * 103.23106 * 159.72088 * 16 15 14 18 18 C 1.54590 * 102.91793 * 322.58538 * 17 16 15 19 19 C 1.47907 * 111.00150 * 294.68574 * 15 14 13 20 20 C 1.53120 * 109.16070 * 302.35293 * 14 13 12 21 21 C 1.46849 * 110.99649 * 169.99929 * 11 10 9 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.09006 * 109.46266 * 294.17473 * 12 11 10 28 28 H 1.09002 * 109.46276 * 54.14664 * 12 11 10 29 29 H 1.09006 * 109.50444 * 299.24199 * 13 12 11 30 30 H 1.09003 * 109.50687 * 179.12283 * 13 12 11 31 31 H 1.09005 * 109.51783 * 62.25186 * 14 13 12 32 32 H 1.09006 * 110.66505 * 278.15321 * 16 15 14 33 33 H 1.08998 * 110.67357 * 41.28112 * 16 15 14 34 34 H 1.08997 * 110.72074 * 204.22349 * 17 16 15 35 35 H 1.09002 * 110.71918 * 80.94251 * 17 16 15 36 36 H 1.09002 * 110.31054 * 263.03823 * 18 17 16 37 37 H 1.09003 * 110.31090 * 140.87229 * 18 17 16 38 38 H 1.08999 * 109.91209 * 333.50514 * 19 15 14 39 39 H 1.08998 * 109.91786 * 94.60690 * 19 15 14 40 40 H 1.09005 * 109.50142 * 297.71204 * 20 14 13 41 41 H 1.08993 * 109.53791 * 177.61458 * 20 14 13 42 42 H 1.08991 * 109.46839 * 305.85721 * 21 11 10 43 43 H 1.09001 * 109.46094 * 65.83266 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 0.7612 -5.1086 1.2517 13 6 -0.1030 -6.3680 1.1587 14 6 0.7968 -7.5813 0.9078 15 7 -0.0320 -8.7849 0.7593 16 6 0.8046 -9.9725 0.4498 17 6 -0.1064 -11.1613 0.8470 18 6 -0.8243 -10.6388 2.1125 19 6 -0.7340 -9.1042 2.0215 20 6 1.6021 -7.3532 -0.3744 21 6 2.4169 -6.0651 -0.2369 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8905 27 1 1.4595 -5.2079 2.0829 28 1 0.1222 -4.2409 1.4161 29 1 -0.8109 -6.2638 0.3363 30 1 -0.6475 -6.5057 2.0929 31 1 1.4788 -7.7090 1.7485 32 1 1.0427 -10.0088 -0.6133 33 1 1.7151 -9.9686 1.0490 34 1 0.4902 -12.0437 1.0785 35 1 -0.8255 -11.3769 0.0568 36 1 -0.3175 -10.9951 3.0093 37 1 -1.8669 -10.9569 2.1145 38 1 -0.1698 -8.7146 2.8688 39 1 -1.7339 -8.6704 2.0103 40 1 0.9211 -7.2643 -1.2209 41 1 2.2758 -8.1946 -0.5362 42 1 2.9804 -5.8923 -1.1537 43 1 3.1073 -6.1599 0.6012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051952382.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:51 Heat of formation + Delta-G solvation = -26.662609 kcal Electronic energy + Delta-G solvation = -19066.181851 eV Core-core repulsion = 16337.411370 eV Total energy + Delta-G solvation = -2728.770482 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.76199 -38.94661 -35.81321 -34.47143 -32.14961 -31.78248 -29.82249 -29.60689 -26.47678 -24.58614 -24.00798 -22.39910 -21.53634 -21.35439 -20.65409 -18.61424 -17.34655 -16.85100 -16.55060 -16.19371 -16.06734 -15.32790 -15.02203 -14.92932 -14.57274 -14.39912 -14.16028 -13.69244 -13.36041 -13.18228 -13.10887 -12.89030 -12.75027 -12.44583 -12.22882 -12.20018 -12.12960 -11.90022 -11.78971 -11.60336 -11.44133 -11.35036 -11.14771 -11.04397 -10.53652 -9.35706 -9.17160 -8.19983 -6.31508 1.39918 1.40554 1.53887 2.40140 2.94443 3.08492 3.13189 3.65379 3.75725 3.86781 4.00578 4.07677 4.22484 4.23235 4.35402 4.38440 4.44085 4.56435 4.58266 4.64550 4.66948 4.73051 4.79030 4.89263 4.93459 4.97778 5.00408 5.05251 5.09527 5.10847 5.20175 5.21245 5.34808 5.37875 5.47218 5.67225 5.79171 6.00578 6.11021 6.13788 6.33291 6.35039 6.85860 7.37551 8.92397 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.056105 B = 0.003687 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.948686 B = 7592.153368 C = 7907.055632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.036 3.964 10 C 0.080 3.920 11 N -0.551 5.551 12 C 0.060 3.940 13 C -0.095 4.095 14 C 0.086 3.914 15 N -0.525 5.525 16 C 0.031 3.969 17 C -0.119 4.119 18 C -0.128 4.128 19 C 0.031 3.969 20 C -0.097 4.097 21 C 0.056 3.944 22 H 0.264 0.736 23 H -0.009 1.009 24 H -0.006 1.006 25 H 0.065 0.935 26 H 0.018 0.982 27 H 0.027 0.973 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.040 0.960 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.924 -22.452 3.556 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.001 4.001 10 C -0.048 4.048 11 N -0.276 5.276 12 C -0.069 4.069 13 C -0.134 4.134 14 C -0.022 4.022 15 N -0.250 5.250 16 C -0.096 4.096 17 C -0.157 4.157 18 C -0.166 4.166 19 C -0.097 4.097 20 C -0.135 4.135 21 C -0.072 4.072 22 H 0.072 0.928 23 H 0.009 0.991 24 H 0.012 0.988 25 H 0.083 0.917 26 H 0.037 0.963 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.080 -22.233 2.758 22.429 hybrid contribution 1.198 1.225 1.330 2.169 sum 2.278 -21.007 4.089 21.523 Atomic orbital electron populations 1.70121 1.07843 1.27714 1.51480 1.25984 0.95770 1.03383 0.94641 0.85363 0.79039 0.78599 0.77806 1.18527 1.20300 1.20339 1.21658 0.93515 0.92277 1.50811 0.92179 1.18926 0.94207 0.91982 0.95000 1.21962 0.95361 0.88468 0.98997 1.61938 1.28101 1.02326 1.35188 1.22019 0.96628 0.98406 0.89851 1.21499 0.97602 0.92298 1.01952 1.21738 0.93290 0.90258 0.96940 1.64779 1.26255 1.02649 1.31277 1.23301 0.95137 0.89601 1.01588 1.22482 0.98523 0.97199 0.97529 1.22400 1.01999 0.93491 0.98689 1.22906 0.99406 0.96905 0.90482 1.21566 0.98391 0.96070 0.97519 1.22130 0.93860 0.90466 1.00744 0.92756 0.99054 0.98780 0.91668 0.96346 0.95482 0.92472 0.91842 0.91040 0.94535 0.89726 0.93680 0.89514 0.90836 0.90706 0.90317 0.94207 0.90887 0.91450 0.89704 0.90218 0.95148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.54 -31.78 9.11 25.60 0.23 -31.55 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.04 2.00 4.90 29.85 0.15 2.15 16 10 C 0.08 3.51 4.90 86.30 0.42 3.93 16 11 N -0.55 -20.91 4.66 -896.37 -4.17 -25.09 16 12 C 0.06 2.14 5.29 86.33 0.46 2.60 16 13 C -0.10 -2.82 5.32 30.65 0.16 -2.66 16 14 C 0.09 2.16 1.72 45.00 0.08 2.24 16 15 N -0.53 -11.64 5.11 -857.38 -4.38 -16.02 16 16 C 0.03 0.54 5.32 86.65 0.46 1.00 16 17 C -0.12 -1.64 7.06 31.80 0.22 -1.42 16 18 C -0.13 -1.83 6.93 31.47 0.22 -1.61 16 19 C 0.03 0.60 5.61 86.45 0.49 1.08 16 20 C -0.10 -2.44 5.10 30.65 0.16 -2.28 16 21 C 0.06 1.66 5.46 86.33 0.47 2.13 16 22 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 23 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 24 H -0.01 -0.36 6.43 -2.39 -0.02 -0.37 16 25 H 0.06 2.79 7.99 -2.39 -0.02 2.77 16 26 H 0.02 0.80 8.12 -2.39 -0.02 0.78 16 27 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.06 2.40 6.21 -2.39 -0.01 2.38 16 29 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.07 1.91 7.45 -2.39 -0.02 1.89 16 31 H 0.04 0.92 7.96 -2.38 -0.02 0.90 16 32 H 0.08 1.42 7.71 -2.38 -0.02 1.40 16 33 H 0.04 0.76 8.02 -2.39 -0.02 0.74 16 34 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.04 0.79 7.65 -2.39 -0.02 0.77 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.08 1.71 7.03 -2.39 -0.02 1.69 16 42 H 0.08 2.25 8.02 -2.39 -0.02 2.23 16 43 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -65.44 326.16 -1.33 -66.77 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.94 Total: 8.94 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: 3.98 Total: -23.92 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -8.27 Total: -98.75 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -65.44 -1.33 -66.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051952382.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.110 kcal (2) G-P(sol) polarization free energy of solvation -65.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds