Wall clock time and date at job start Mon Mar 30 2020 04:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.47235 * 2 1 4 4 C 1.50698 * 109.46956 * 120.00007 * 2 1 3 5 5 H 1.07997 * 120.00392 * 119.99575 * 4 2 1 6 6 C 1.37884 * 120.00045 * 300.00078 * 4 2 1 7 7 N 1.31514 * 119.99668 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00151 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47095 * 89.99853 * 8 6 4 10 10 H 1.48498 * 109.47413 * 210.00027 * 8 6 4 11 11 H 1.48504 * 109.47135 * 330.00242 * 8 6 4 12 12 N 1.46901 * 109.47122 * 239.99798 * 2 1 3 13 13 C 1.46901 * 110.99838 * 191.84609 * 12 2 1 14 14 C 1.46903 * 110.99967 * 67.89384 * 12 2 1 15 15 H 1.08994 * 109.46905 * 325.96586 * 14 12 2 16 16 C 1.53000 * 109.47053 * 85.96672 * 14 12 2 17 17 N 1.46898 * 109.47235 * 302.43322 * 16 14 12 18 18 C 1.50696 * 109.47121 * 205.96538 * 14 12 2 19 19 C 1.39877 * 126.04125 * 325.98662 * 18 14 12 20 20 N 1.30835 * 108.20378 * 179.97438 * 19 18 14 21 21 N 1.40090 * 108.20602 * 0.02562 * 20 19 18 22 22 C 1.46495 * 126.03791 * 179.97438 * 21 20 19 23 23 C 1.34957 * 107.92192 * 359.75530 * 21 20 19 24 24 H 1.09000 * 109.46404 * 64.52296 * 1 2 3 25 25 H 1.08996 * 109.47072 * 184.51778 * 1 2 3 26 26 H 1.08995 * 109.46849 * 304.52361 * 1 2 3 27 27 H 0.96999 * 120.00017 * 179.97438 * 7 6 4 28 28 H 1.09005 * 109.47107 * 305.31832 * 13 12 2 29 29 H 1.08996 * 109.46888 * 65.31801 * 13 12 2 30 30 H 1.08994 * 109.46985 * 185.31857 * 13 12 2 31 31 H 1.09000 * 109.47246 * 62.43219 * 16 14 12 32 32 H 1.09000 * 109.47022 * 182.43012 * 16 14 12 33 33 H 1.00905 * 111.00212 * 69.35386 * 17 16 14 34 34 H 1.00893 * 111.00180 * 193.30987 * 17 16 14 35 35 H 1.07998 * 125.89724 * 359.97438 * 19 18 14 36 36 H 1.09003 * 109.47086 * 89.97785 * 22 21 20 37 37 H 1.09005 * 109.47095 * 209.97271 * 22 21 20 38 38 H 1.08996 * 109.47137 * 329.97182 * 22 21 20 39 39 H 1.08005 * 126.12267 * 180.23792 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3212 -1.1203 4.0080 9 1 3.6295 -0.5459 4.4124 10 1 1.3430 -0.9492 5.1120 11 1 2.4857 -2.5662 3.7120 12 7 2.0197 -0.6925 -1.1994 13 6 3.4607 -0.9608 -1.1010 14 6 1.7086 0.0736 -2.4136 15 1 0.7560 0.5874 -2.2849 16 6 2.8131 1.1023 -2.6645 17 7 2.9400 1.9800 -1.4934 18 6 1.6188 -0.8639 -3.5900 19 6 2.3789 -2.0229 -3.7786 20 7 2.0175 -2.5688 -4.9113 21 7 1.0150 -1.7730 -5.4806 22 6 0.3330 -2.0248 -6.7524 23 6 0.7851 -0.7361 -4.6480 24 1 -0.3632 0.4421 -0.9278 25 1 -0.3633 -1.0244 0.0809 26 1 -0.3633 0.5824 0.8467 27 1 0.7080 1.1609 3.4843 28 1 3.9910 -0.0293 -0.9024 29 1 3.6447 -1.6639 -0.2887 30 1 3.8156 -1.3881 -2.0388 31 1 3.7579 0.5865 -2.8361 32 1 2.5609 1.6997 -3.5407 33 1 3.3199 1.4780 -0.7048 34 1 3.4992 2.7917 -1.7087 35 1 3.1336 -2.4017 -3.1054 36 1 -0.5515 -2.6367 -6.5755 37 1 0.0350 -1.0761 -7.1990 38 1 1.0080 -2.5487 -7.4291 39 1 0.0659 0.0553 -4.8001 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063085258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:36 Heat of formation + Delta-G solvation = 114.410483 kcal Electronic energy + Delta-G solvation = -19524.982985 eV Core-core repulsion = 16698.789548 eV Total energy + Delta-G solvation = -2826.193437 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.94361 -38.04247 -33.70351 -32.98219 -31.91566 -30.61540 -29.08108 -27.61366 -25.92474 -24.78852 -23.93165 -21.44667 -20.79859 -19.93072 -18.76286 -16.94241 -16.07170 -15.57022 -15.22727 -14.98381 -14.47791 -14.29512 -13.71997 -13.39289 -13.04718 -12.74247 -12.60251 -12.49819 -12.05286 -11.76609 -11.70771 -11.29602 -11.00809 -10.92841 -10.63856 -10.57685 -10.05510 -9.96238 -9.81583 -9.70253 -9.11225 -8.65805 -8.34387 -8.20895 -7.95348 -6.84461 -5.90382 -3.93802 2.16000 2.75814 3.19097 3.34876 3.42280 3.46155 4.48084 4.62612 5.03978 5.05850 5.11258 5.20901 5.32878 5.42262 5.45209 5.72602 5.74368 5.90974 6.04697 6.08509 6.18901 6.35270 6.39999 6.71189 6.83002 7.00531 7.09417 7.25633 7.30975 7.39524 7.62854 7.78242 7.89520 7.95199 8.00094 8.02982 8.35089 8.49319 8.78000 9.14506 9.70187 11.15846 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.031713 B = 0.005772 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.694599 B = 4849.694262 C = 5016.851024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.197 3.803 3 H 0.043 0.957 4 C -0.509 4.509 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.889 5.889 8 Si 0.890 3.110 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.527 5.527 13 C 0.032 3.968 14 C 0.155 3.845 15 H 0.088 0.912 16 C 0.044 3.956 17 N -0.846 5.846 18 C -0.198 4.198 19 C 0.067 3.933 20 N -0.312 5.312 21 N -0.387 5.387 22 C 0.107 3.893 23 C 0.044 3.956 24 H 0.006 0.994 25 H 0.027 0.973 26 H 0.079 0.921 27 H 0.258 0.742 28 H 0.012 0.988 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.025 0.975 32 H 0.058 0.942 33 H 0.356 0.644 34 H 0.325 0.675 35 H 0.184 0.816 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.225 -0.343 -14.820 14.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.091 3.909 3 H 0.061 0.939 4 C -0.547 4.547 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.528 5.528 8 Si 0.719 3.281 9 H -0.210 1.210 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.251 5.251 13 C -0.117 4.117 14 C 0.044 3.956 15 H 0.106 0.894 16 C -0.089 4.089 17 N -0.381 5.381 18 C -0.211 4.211 19 C -0.119 4.119 20 N -0.133 5.133 21 N -0.170 5.170 22 C -0.035 4.035 23 C -0.102 4.102 24 H 0.025 0.975 25 H 0.046 0.954 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.031 0.969 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.176 0.824 34 H 0.137 0.863 35 H 0.201 0.799 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.207 -1.611 -15.676 15.760 hybrid contribution 1.444 0.757 1.402 2.150 sum 1.651 -0.855 -14.274 14.394 Atomic orbital electron populations 1.21749 0.98227 0.99522 0.98727 1.19627 0.92274 0.94204 0.84771 0.93922 1.21305 1.31022 1.12220 0.90183 0.92122 1.24895 0.95313 0.95094 0.98757 1.69922 1.36802 1.22986 1.23069 0.86631 0.78359 0.80117 0.83033 1.20985 1.21438 1.20049 1.62158 1.13199 1.47149 1.02596 1.22446 0.89627 0.99515 1.00062 1.19949 0.98452 0.89265 0.87901 0.89375 1.22380 0.98305 0.95020 0.93153 1.59126 1.60014 1.11189 1.07782 1.20150 1.01874 1.00578 0.98456 1.23968 0.99789 0.94294 0.93873 1.77295 1.06040 1.18045 1.11930 1.48337 1.30928 1.19665 1.18055 1.21715 0.96911 1.02648 0.82204 1.22195 1.01612 0.93981 0.92363 0.97487 0.95393 0.90285 0.93224 0.96939 0.90854 0.93873 0.95687 0.92313 0.82353 0.86344 0.79902 0.91247 0.89957 0.89815 0.81434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 8.98 37.16 0.33 -2.76 16 2 C 0.20 4.80 1.71 -68.86 -0.12 4.68 16 3 H 0.04 1.10 4.84 -51.93 -0.25 0.85 16 4 C -0.51 -13.58 7.96 -34.44 -0.27 -13.86 16 5 H 0.06 1.62 5.90 -52.49 -0.31 1.31 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -25.12 11.37 55.43 0.63 -24.49 16 8 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.53 -10.96 4.30 -229.69 -0.99 -11.95 16 13 C 0.03 0.61 7.24 60.07 0.44 1.04 16 14 C 0.16 2.81 2.44 -68.86 -0.17 2.64 16 15 H 0.09 1.73 5.89 -51.93 -0.31 1.43 16 16 C 0.04 0.72 5.59 -3.82 -0.02 0.70 16 17 N -0.85 -14.68 8.08 -10.37 -0.08 -14.76 16 18 C -0.20 -3.28 5.14 -105.05 -0.54 -3.82 16 19 C 0.07 1.12 10.81 -17.36 -0.19 0.93 16 20 N -0.31 -5.17 12.58 30.63 0.39 -4.79 16 21 N -0.39 -5.36 4.01 -68.16 -0.27 -5.64 16 22 C 0.11 0.93 11.47 59.84 0.69 1.62 16 23 C 0.04 0.62 11.40 -17.22 -0.20 0.42 16 24 H 0.01 0.14 6.21 -51.93 -0.32 -0.18 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 2.14 6.20 -51.93 -0.32 1.82 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.01 0.23 5.06 -51.93 -0.26 -0.03 16 29 H 0.07 1.48 6.10 -51.93 -0.32 1.17 16 30 H 0.04 0.71 4.69 -51.93 -0.24 0.46 16 31 H 0.02 0.40 6.57 -51.93 -0.34 0.06 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.36 6.92 4.73 -39.29 -0.19 6.73 16 34 H 0.32 4.75 9.08 -39.30 -0.36 4.39 16 35 H 0.18 2.95 5.69 -52.49 -0.30 2.65 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.17 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 297.27 15.07 4.48 4.48 Total: -1.00 -30.59 297.27 -6.20 -36.80 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -5.19 Total: 10.96 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -0.14 Total: -6.85 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.33 Total: -61.63 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.59 -6.20 -36.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.207 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds