Wall clock time and date at job start Mon Mar 30 2020 04:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46889 * 2 1 4 4 C 1.50702 * 109.46999 * 240.00365 * 2 1 3 5 5 H 1.08003 * 119.99747 * 239.99754 * 4 2 1 6 6 C 1.37871 * 120.00017 * 59.99597 * 4 2 1 7 7 N 1.31516 * 119.99987 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00038 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46842 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47139 * 120.00219 * 8 6 4 11 11 H 1.48503 * 109.47275 * 240.00215 * 8 6 4 12 12 N 1.46895 * 109.47107 * 120.00475 * 2 1 3 13 13 C 1.46895 * 111.00486 * 59.21593 * 12 2 1 14 14 C 1.46899 * 111.00074 * 295.25768 * 12 2 1 15 15 H 1.09007 * 109.47174 * 84.00721 * 14 12 2 16 16 C 1.53001 * 109.47664 * 204.00797 * 14 12 2 17 17 N 1.46903 * 109.46782 * 306.22360 * 16 14 12 18 18 C 1.50701 * 109.47181 * 324.00837 * 14 12 2 19 19 C 1.39867 * 126.03946 * 312.62660 * 18 14 12 20 20 N 1.30844 * 108.20527 * 179.81877 * 19 18 14 21 21 N 1.40086 * 108.19949 * 0.43492 * 20 19 18 22 22 C 1.46506 * 126.03283 * 179.74274 * 21 20 19 23 23 C 1.34950 * 107.92835 * 359.72015 * 21 20 19 24 24 H 1.08999 * 109.47396 * 178.26920 * 1 2 3 25 25 H 1.09002 * 109.46850 * 298.26412 * 1 2 3 26 26 H 1.08996 * 109.47482 * 58.26251 * 1 2 3 27 27 H 0.97003 * 119.99591 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.46682 * 299.67861 * 13 12 2 29 29 H 1.08998 * 109.47489 * 59.67524 * 13 12 2 30 30 H 1.09001 * 109.47340 * 179.68381 * 13 12 2 31 31 H 1.08994 * 109.46822 * 66.21720 * 16 14 12 32 32 H 1.08996 * 109.47526 * 186.22064 * 16 14 12 33 33 H 1.00892 * 111.00288 * 75.93536 * 17 16 14 34 34 H 1.00905 * 110.99563 * 199.89382 * 17 16 14 35 35 H 1.08004 * 125.90113 * 359.97438 * 19 18 14 36 36 H 1.08999 * 109.46766 * 269.97660 * 22 21 20 37 37 H 1.08999 * 109.47001 * 29.98028 * 22 21 20 38 38 H 1.08999 * 109.46911 * 149.97675 * 22 21 20 39 39 H 1.08002 * 126.12625 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6033 8 14 2.3212 -1.1202 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8161 11 1 3.1464 -0.1872 -4.8166 12 7 2.0196 -0.6926 1.1993 13 6 1.5334 -2.0780 1.2427 14 6 1.6434 0.0358 2.4183 15 1 0.6300 -0.2412 2.7089 16 6 2.6132 -0.3222 3.5463 17 7 2.6661 -1.7820 3.7017 18 6 1.7032 1.5186 2.1562 19 6 2.7515 2.2022 1.5316 20 7 2.4394 3.4719 1.4820 21 7 1.1851 3.6379 2.0834 22 6 0.4671 4.9049 2.2436 23 6 0.7548 2.4247 2.4886 24 1 -0.3634 -1.0272 -0.0310 25 1 -0.3633 0.4867 0.9052 26 1 -0.3634 0.5405 -0.8739 27 1 0.7087 1.1614 -3.4843 28 1 0.4436 -2.0801 1.2641 29 1 1.8804 -2.6128 0.3585 30 1 1.9153 -2.5693 2.1377 31 1 3.6072 0.0535 3.3037 32 1 2.2709 0.1301 4.4770 33 1 3.2140 -2.2043 2.9672 34 1 3.0227 -2.0362 4.6107 35 1 3.6605 1.7583 1.1531 36 1 0.7440 5.3618 3.1937 37 1 0.7297 5.5771 1.4268 38 1 -0.6067 4.7182 2.2295 39 1 -0.1793 2.2146 2.9883 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063085259.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:39 Heat of formation + Delta-G solvation = 110.772093 kcal Electronic energy + Delta-G solvation = -19850.475812 eV Core-core repulsion = 17024.124603 eV Total energy + Delta-G solvation = -2826.351209 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.81270 -37.58061 -34.13643 -32.82728 -32.06593 -30.39644 -28.40353 -27.63502 -25.40956 -25.04379 -23.93351 -21.60642 -20.48425 -20.02602 -18.42981 -16.49863 -16.00523 -15.88652 -15.00864 -14.72049 -14.44807 -14.00085 -13.63287 -13.36882 -12.95739 -12.78882 -12.47382 -12.33938 -12.14241 -11.65379 -11.56436 -11.26285 -10.98373 -10.72589 -10.57270 -10.48142 -10.19577 -10.01850 -9.87118 -9.51044 -8.93253 -8.57521 -8.29698 -8.25219 -7.65156 -6.90333 -5.88140 -3.90280 2.41243 3.01080 3.35961 3.41547 3.43816 3.48035 4.51084 4.81807 5.02690 5.15701 5.30650 5.32624 5.44009 5.54107 5.64776 5.77238 5.92342 6.00482 6.14290 6.30958 6.42674 6.60297 6.74649 6.81851 6.92945 7.03673 7.14756 7.24518 7.38491 7.47883 7.49926 7.72694 7.80701 7.89713 8.00119 8.25841 8.36052 8.59660 8.82062 9.17359 9.73613 11.18600 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.017386 B = 0.008992 C = 0.006616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.133637 B = 3112.990721 C = 4231.363397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.206 3.794 3 H 0.055 0.945 4 C -0.496 4.496 5 H 0.060 0.940 6 C 0.057 3.943 7 N -0.893 5.893 8 Si 0.891 3.109 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.286 1.286 12 N -0.527 5.527 13 C 0.018 3.982 14 C 0.165 3.835 15 H 0.039 0.961 16 C 0.081 3.919 17 N -0.846 5.846 18 C -0.209 4.209 19 C 0.087 3.913 20 N -0.306 5.306 21 N -0.386 5.386 22 C 0.109 3.891 23 C 0.048 3.952 24 H 0.025 0.975 25 H 0.005 0.995 26 H 0.079 0.921 27 H 0.256 0.744 28 H 0.010 0.990 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.033 0.967 32 H 0.057 0.943 33 H 0.352 0.648 34 H 0.324 0.676 35 H 0.181 0.819 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.230 2.419 12.544 12.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.100 3.900 3 H 0.072 0.928 4 C -0.535 4.535 5 H 0.079 0.921 6 C -0.144 4.144 7 N -0.533 5.533 8 Si 0.719 3.281 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.213 1.213 12 N -0.251 5.251 13 C -0.130 4.130 14 C 0.054 3.946 15 H 0.057 0.943 16 C -0.051 4.051 17 N -0.378 5.378 18 C -0.221 4.221 19 C -0.100 4.100 20 N -0.127 5.127 21 N -0.169 5.169 22 C -0.033 4.033 23 C -0.097 4.097 24 H 0.044 0.956 25 H 0.024 0.976 26 H 0.098 0.902 27 H 0.066 0.934 28 H 0.029 0.971 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.168 0.832 34 H 0.136 0.864 35 H 0.198 0.802 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.287 3.864 11.930 12.543 hybrid contribution -0.164 -0.985 -0.712 1.227 sum -0.452 2.878 11.218 11.590 Atomic orbital electron populations 1.22315 1.01440 0.98920 0.99694 1.19456 0.89445 0.95414 0.85686 0.92751 1.21236 1.30097 1.12141 0.89983 0.92135 1.24912 0.95466 0.95155 0.98830 1.69930 1.37380 1.23126 1.22824 0.86560 0.78460 0.79686 0.83375 1.19813 1.21402 1.21263 1.62363 1.59232 1.01902 1.01609 1.22697 0.97202 0.90996 1.02141 1.19754 0.96139 0.87051 0.91614 0.94291 1.21756 0.98371 0.87674 0.97293 1.59092 1.61683 1.10017 1.07047 1.19911 0.96353 0.96031 1.09805 1.23652 0.99760 0.89836 0.96756 1.77310 0.96518 1.19447 1.19411 1.48235 1.15603 1.06351 1.46713 1.21675 0.95660 0.83325 1.02627 1.22085 0.99942 0.85344 1.02351 0.95625 0.97610 0.90206 0.93418 0.97131 0.92017 0.90036 0.94838 0.92414 0.83190 0.86399 0.80179 0.91593 0.89711 0.90123 0.81990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 8.19 37.16 0.30 -3.82 16 2 C 0.21 5.16 1.81 -68.87 -0.12 5.04 16 3 H 0.05 1.49 4.76 -51.93 -0.25 1.24 16 4 C -0.50 -13.70 7.93 -34.44 -0.27 -13.98 16 5 H 0.06 1.68 6.73 -52.48 -0.35 1.32 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -26.22 11.34 55.43 0.63 -25.59 16 8 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 N -0.53 -11.02 4.42 -229.69 -1.02 -12.04 16 13 C 0.02 0.36 8.28 60.06 0.50 0.86 16 14 C 0.17 2.99 1.80 -68.86 -0.12 2.86 16 15 H 0.04 0.75 7.46 -51.93 -0.39 0.36 16 16 C 0.08 1.20 6.46 -3.82 -0.02 1.18 16 17 N -0.85 -11.34 7.55 -10.37 -0.08 -11.41 16 18 C -0.21 -3.86 2.99 -105.05 -0.31 -4.17 16 19 C 0.09 1.72 9.57 -17.36 -0.17 1.55 16 20 N -0.31 -6.06 12.58 30.63 0.39 -5.68 16 21 N -0.39 -6.47 4.01 -68.16 -0.27 -6.75 16 22 C 0.11 1.26 11.47 59.85 0.69 1.94 16 23 C 0.05 0.80 10.92 -17.22 -0.19 0.61 16 24 H 0.02 0.63 6.49 -51.93 -0.34 0.29 16 25 H 0.00 0.12 6.09 -51.93 -0.32 -0.20 16 26 H 0.08 2.24 6.12 -51.93 -0.32 1.92 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.01 0.21 6.33 -51.93 -0.33 -0.11 16 29 H 0.06 1.32 6.50 -51.93 -0.34 0.98 16 30 H 0.08 1.39 4.28 -51.93 -0.22 1.17 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.35 4.89 7.08 -39.30 -0.28 4.61 16 34 H 0.32 3.48 9.08 -39.29 -0.36 3.12 16 35 H 0.18 3.54 8.06 -52.48 -0.42 3.12 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.16 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 301.55 15.07 4.54 4.54 Total: -1.00 -31.74 301.55 -6.23 -37.97 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.58 Total: 8.51 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 0.18 Total: -6.41 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -0.35 Total: -61.46 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.74 -6.23 -37.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085259.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.738 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds