Wall clock time and date at job start Mon Mar 30 2020 04:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99660 * 2 1 4 4 H 1.48505 * 109.47162 * 90.00187 * 3 2 1 5 5 H 1.48499 * 109.47486 * 209.99872 * 3 2 1 6 6 H 1.48504 * 109.47651 * 330.00543 * 3 2 1 7 7 C 1.37872 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99969 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99854 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46921 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47375 * 179.97438 * 10 9 7 12 12 C 1.46852 * 110.99742 * 65.58201 * 11 10 9 13 13 C 1.53031 * 109.52404 * 185.84401 * 12 11 10 14 14 C 1.53123 * 109.27518 * 300.81814 * 13 12 11 15 15 C 1.53113 * 109.16175 * 57.65627 * 14 13 12 16 16 C 1.46843 * 111.00321 * 189.78945 * 11 10 9 17 17 H 1.09005 * 109.46469 * 294.18038 * 16 11 10 18 18 C 1.53000 * 109.46396 * 54.14333 * 16 11 10 19 19 H 1.08993 * 109.88444 * 301.31996 * 18 16 11 20 20 C 1.54313 * 109.89190 * 180.11458 * 18 16 11 21 21 C 1.55139 * 103.02386 * 218.31573 * 20 18 16 22 22 C 1.54913 * 101.65122 * 35.65153 * 21 20 18 23 23 N 1.47455 * 109.88391 * 62.34614 * 18 16 11 24 24 H 0.97002 * 119.99227 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47309 * 299.99674 * 9 7 2 26 26 H 1.08997 * 109.47444 * 60.00595 * 9 7 2 27 27 H 1.09000 * 109.47218 * 300.00015 * 10 9 7 28 28 H 1.09003 * 109.47139 * 59.99923 * 10 9 7 29 29 H 1.09008 * 109.45799 * 305.85510 * 12 11 10 30 30 H 1.08991 * 109.46568 * 65.83230 * 12 11 10 31 31 H 1.09001 * 109.50895 * 60.75414 * 13 12 11 32 32 H 1.09000 * 109.50735 * 180.84217 * 13 12 11 33 33 H 1.09005 * 109.52038 * 177.55998 * 14 13 12 34 34 H 1.08998 * 109.51983 * 297.68483 * 14 13 12 35 35 H 1.09002 * 109.50791 * 62.28937 * 15 14 13 36 36 H 1.09002 * 109.50383 * 182.40587 * 15 14 13 37 37 H 1.09008 * 110.70493 * 336.69633 * 20 18 16 38 38 H 1.08997 * 110.70753 * 99.92680 * 20 18 16 39 39 H 1.09003 * 110.99170 * 277.56332 * 21 20 18 40 40 H 1.08999 * 111.02837 * 153.75981 * 21 20 18 41 41 H 1.08997 * 110.37139 * 204.10080 * 22 21 20 42 42 H 1.09002 * 110.37166 * 81.76485 * 22 21 20 43 43 H 1.00895 * 111.00146 * 356.14977 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6528 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5110 -4.9343 0.0001 12 6 0.7567 -5.1070 -1.2480 13 6 -0.1073 -6.3666 -1.1532 14 6 0.7936 -7.5801 -0.9073 15 6 1.6036 -7.3536 0.3721 16 6 2.4179 -6.0654 0.2332 17 1 3.1053 -6.1591 -0.6076 18 6 3.2139 -5.8243 1.5174 19 1 3.7794 -4.8963 1.4344 20 6 4.1729 -7.0066 1.7705 21 6 4.1130 -7.1818 3.3108 22 6 2.6300 -6.8457 3.6065 23 7 2.2967 -5.7515 2.6697 24 1 -0.4849 -0.8401 -0.0004 25 1 0.6248 -2.5571 0.8897 26 1 0.6242 -2.5568 -0.8903 27 1 2.8721 -3.6043 -0.8905 28 1 2.8721 -3.6042 0.8895 29 1 0.1170 -4.2391 -1.4088 30 1 1.4516 -5.2054 -2.0818 31 1 -0.8120 -6.2634 -0.3281 32 1 -0.6557 -6.5027 -2.0853 33 1 0.1789 -8.4734 -0.7960 34 1 1.4716 -7.7073 -1.7512 35 1 0.9259 -7.2660 1.2213 36 1 2.2781 -8.1953 0.5296 37 1 3.8179 -7.9055 1.2663 38 1 5.1845 -6.7577 1.4499 39 1 4.7797 -6.4786 3.8100 40 1 4.3455 -8.2075 3.5970 41 1 2.5150 -6.5109 4.6373 42 1 1.9989 -7.7138 3.4160 43 1 1.3350 -5.8118 2.3707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063190273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:18 Heat of formation + Delta-G solvation = -11.845113 kcal Electronic energy + Delta-G solvation = -19905.743465 eV Core-core repulsion = 17177.615518 eV Total energy + Delta-G solvation = -2728.127947 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.98685 -37.27428 -34.35942 -32.66365 -31.47476 -30.00999 -28.84658 -27.63464 -24.68170 -23.41010 -22.67769 -21.08168 -20.42042 -20.33441 -18.86556 -16.76928 -16.33186 -15.77451 -15.30920 -14.64542 -14.17929 -13.83419 -13.67762 -13.59754 -13.33934 -13.02260 -12.88527 -12.32824 -12.10365 -11.96374 -11.69409 -11.33863 -11.25429 -11.19985 -10.93222 -10.80024 -10.73414 -10.65134 -10.31488 -10.09879 -10.03924 -9.76261 -9.46909 -8.48489 -8.22279 -8.10160 -7.73614 -6.27988 -3.95591 3.48531 3.52206 3.67598 4.13377 4.56799 4.64540 4.67891 4.75139 4.88146 4.97752 5.00215 5.12430 5.32226 5.35616 5.45708 5.50218 5.50921 5.61538 5.70611 5.77496 5.79192 5.87814 5.94386 5.97936 6.00033 6.02812 6.12796 6.16605 6.23720 6.33655 6.43270 6.50624 6.54310 6.95739 7.15811 7.39603 7.50495 7.71288 7.76963 7.82676 8.33912 8.55953 8.98008 9.76188 11.13310 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021403 B = 0.006065 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.910239 B = 4615.306825 C = 5489.368186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 1.071 2.929 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.599 4.599 8 H 0.046 0.954 9 C 0.018 3.982 10 C 0.067 3.933 11 N -0.529 5.529 12 C 0.055 3.945 13 C -0.116 4.116 14 C -0.118 4.118 15 C -0.113 4.113 16 C 0.067 3.933 17 H 0.037 0.963 18 C 0.083 3.917 19 H 0.089 0.911 20 C -0.143 4.143 21 C -0.127 4.127 22 C 0.044 3.956 23 N -0.667 5.667 24 H 0.269 0.731 25 H 0.017 0.983 26 H 0.004 0.996 27 H 0.015 0.985 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.024 0.976 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.035 0.965 43 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.844 -17.786 1.742 18.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.188 4.188 3 Si 0.899 3.101 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.638 4.638 8 H 0.064 0.936 9 C -0.019 4.019 10 C -0.059 4.059 11 N -0.254 5.254 12 C -0.073 4.073 13 C -0.154 4.154 14 C -0.155 4.155 15 C -0.151 4.151 16 C -0.043 4.043 17 H 0.055 0.945 18 C -0.027 4.027 19 H 0.107 0.893 20 C -0.182 4.182 21 C -0.166 4.166 22 C -0.085 4.085 23 N -0.300 5.300 24 H 0.080 0.920 25 H 0.035 0.965 26 H 0.023 0.977 27 H 0.033 0.967 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.053 0.947 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.654 -15.604 2.466 16.469 hybrid contribution 0.492 -2.478 -1.233 2.811 sum 5.146 -18.082 1.233 18.841 Atomic orbital electron populations 1.70739 1.06855 1.30652 1.46876 1.25787 0.96566 1.02556 0.93925 0.83528 0.74598 0.75219 0.76728 1.21451 1.21635 1.21089 1.22031 0.94182 0.92107 1.55505 0.93568 1.19189 0.94585 0.91862 0.96274 1.22267 0.96661 0.87671 0.99344 1.61976 1.26868 1.02033 1.34490 1.22097 0.96715 0.98338 0.90192 1.21599 0.98013 0.94194 1.01622 1.21551 0.98414 0.98045 0.97537 1.21694 0.98617 0.96392 0.98419 1.22045 0.93512 0.91776 0.96995 0.94473 1.22394 0.93116 0.98129 0.89033 0.89336 1.22969 1.00042 0.98755 0.96406 1.22661 0.97073 1.01106 0.95711 1.22843 0.95079 0.92668 0.97959 1.61889 1.08503 1.45199 1.14416 0.92024 0.96513 0.97750 0.96677 0.90699 0.89768 0.95821 0.91216 0.92027 0.92280 0.92583 0.91542 0.91934 0.91130 0.91171 0.90841 0.91406 0.90812 0.94696 0.82766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.69 13.65 55.43 0.76 -27.94 16 2 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 3 Si 1.07 26.05 29.90 -169.99 -5.08 20.96 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.60 -17.55 9.11 -34.44 -0.31 -17.87 16 8 H 0.05 1.34 7.74 -52.49 -0.41 0.93 16 9 C 0.02 0.48 4.21 -27.88 -0.12 0.36 16 10 C 0.07 1.45 4.62 -3.82 -0.02 1.43 16 11 N -0.53 -9.42 4.03 -226.69 -0.91 -10.34 16 12 C 0.05 0.92 5.29 -3.83 -0.02 0.90 16 13 C -0.12 -1.57 6.09 -26.65 -0.16 -1.73 16 14 C -0.12 -1.38 6.00 -26.61 -0.16 -1.54 16 15 C -0.11 -1.39 4.91 -26.65 -0.13 -1.52 16 16 C 0.07 0.98 1.59 -67.72 -0.11 0.87 16 17 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 18 C 0.08 1.21 2.76 -66.72 -0.18 1.02 16 19 H 0.09 1.50 6.07 -51.93 -0.32 1.19 16 20 C -0.14 -1.63 6.28 -24.91 -0.16 -1.79 16 21 C -0.13 -1.35 7.08 -24.59 -0.17 -1.53 16 22 C 0.04 0.52 7.57 -2.30 -0.02 0.50 16 23 N -0.67 -10.00 7.07 -103.81 -0.73 -10.73 16 24 H 0.27 8.45 7.22 -40.82 -0.29 8.15 16 25 H 0.02 0.47 8.01 -51.93 -0.42 0.06 16 26 H 0.00 0.12 6.29 -51.93 -0.33 -0.21 16 27 H 0.01 0.33 8.13 -51.93 -0.42 -0.09 16 28 H 0.07 1.66 5.64 -51.93 -0.29 1.36 16 29 H 0.08 1.61 6.20 -51.92 -0.32 1.29 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.85 6.63 -51.93 -0.34 0.50 16 36 H 0.06 0.68 6.12 -51.93 -0.32 0.36 16 37 H 0.07 0.74 5.77 -51.92 -0.30 0.44 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.35 5.55 6.44 -39.29 -0.25 5.30 16 LS Contribution 316.77 15.07 4.77 4.77 Total: -1.00 -30.65 316.77 -10.32 -40.96 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.46 Total: 2.83 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -1.66 Total: -20.53 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.89 Total: -49.01 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -5.08 Total: 20.96 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.65 -10.32 -40.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063190273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.118 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds