Wall clock time and date at job start Mon Mar 30 2020 03:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 119.99735 * 2 1 4 4 C 1.50697 * 109.46999 * 90.00067 * 3 2 1 5 5 H 1.07998 * 120.00163 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99539 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99965 * 180.02562 * 6 4 3 8 8 Si 1.86795 * 120.00260 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.47392 * 89.99941 * 8 6 4 10 10 H 1.48506 * 109.47192 * 209.99586 * 8 6 4 11 11 H 1.48500 * 109.47072 * 329.99750 * 8 6 4 12 12 C 1.34779 * 120.00057 * 180.02562 * 2 1 3 13 13 O 1.21281 * 119.99840 * 180.02562 * 12 2 1 14 14 C 1.50699 * 119.99864 * 359.97438 * 12 2 1 15 15 H 1.08995 * 115.56002 * 312.07645 * 14 12 2 16 16 C 1.53049 * 117.50334 * 166.31853 * 14 12 2 17 17 C 1.52733 * 59.94353 * 252.53344 * 16 14 12 18 18 C 1.53213 * 117.83646 * 107.73846 * 17 16 14 19 19 C 1.53258 * 108.62400 * 196.98054 * 18 17 16 20 20 N 1.46806 * 109.45255 * 304.42848 * 19 18 17 21 21 C 1.46803 * 111.58370 * 64.81817 * 20 19 18 22 22 C 1.53220 * 117.83800 * 252.26188 * 17 16 14 23 23 H 1.09004 * 109.46952 * 269.99911 * 1 2 3 24 24 H 1.08998 * 109.47191 * 150.00306 * 1 2 3 25 25 H 1.09000 * 109.47545 * 30.00098 * 1 2 3 26 26 H 1.09000 * 109.46691 * 210.00368 * 3 2 1 27 27 H 1.09001 * 109.46915 * 329.99628 * 3 2 1 28 28 H 0.96992 * 120.00580 * 180.02562 * 7 6 4 29 29 H 1.08999 * 117.50825 * 0.02562 * 16 14 12 30 30 H 1.09000 * 117.50362 * 145.06045 * 16 14 12 31 31 H 1.09003 * 109.61118 * 316.71858 * 18 17 16 32 32 H 1.09004 * 109.61521 * 77.23910 * 18 17 16 33 33 H 1.09005 * 109.47364 * 184.43643 * 19 18 17 34 34 H 1.09005 * 109.47936 * 64.42937 * 19 18 17 35 35 H 1.00898 * 111.00681 * 189.20174 * 20 19 18 36 36 H 1.09001 * 109.47710 * 175.19403 * 21 20 19 37 37 H 1.08992 * 109.48151 * 55.17715 * 21 20 19 38 38 H 1.09000 * 109.61577 * 282.76072 * 22 17 16 39 39 H 1.09003 * 109.61321 * 43.10650 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0974 1.0962 2.2417 6 6 3.1268 2.8775 1.6727 7 7 3.3465 3.2570 2.9126 8 14 3.7337 3.9287 0.2529 9 1 2.6822 4.9078 -0.1230 10 1 4.9619 4.6551 0.6643 11 1 4.0394 3.0592 -0.9115 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 1 0.5799 -2.5502 0.7296 16 6 2.1742 -3.7438 -0.3222 17 6 1.1910 -3.1747 -1.3431 18 6 1.7672 -2.5000 -2.5922 19 6 0.6689 -1.6498 -3.2400 20 7 -0.5018 -2.4914 -3.5164 21 6 -1.1088 -2.9956 -2.2785 22 6 -0.1222 -3.9305 -1.5702 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 -0.8900 -0.5138 25 1 -0.3634 0.8900 -0.5138 26 1 3.1498 1.1384 -0.5139 27 1 1.6083 2.0283 -0.5139 28 1 3.8232 4.0828 3.0899 29 1 3.2381 -3.6364 -0.5334 30 1 1.8878 -4.6586 0.1967 31 1 2.6049 -1.8622 -2.3100 32 1 2.1043 -3.2606 -3.2964 33 1 1.0402 -1.2260 -4.1731 34 1 0.3856 -0.8443 -2.5624 35 1 -1.1796 -1.9958 -4.0758 36 1 -2.0205 -3.5432 -2.5176 37 1 -1.3492 -2.1578 -1.6241 38 1 0.0625 -4.8064 -2.1921 39 1 -0.5349 -4.2434 -0.6111 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069792169.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:27 Heat of formation + Delta-G solvation = -9.851351 kcal Electronic energy + Delta-G solvation = -19638.913698 eV Core-core repulsion = 16775.039112 eV Total energy + Delta-G solvation = -2863.874585 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.23571 -37.99241 -35.50437 -34.70694 -32.50681 -31.00872 -29.14043 -28.45894 -26.01255 -24.21454 -23.21634 -21.95187 -21.47407 -19.10617 -17.95638 -16.97512 -16.70059 -16.44729 -15.38703 -14.82179 -14.62523 -14.50423 -14.03405 -13.86389 -13.20186 -13.03578 -12.69396 -12.42479 -12.25723 -12.22751 -12.04255 -11.69088 -11.66605 -11.48551 -11.19347 -10.92125 -10.52757 -10.50613 -10.14150 -9.86874 -9.76560 -9.54730 -8.97005 -8.59604 -8.50440 -7.68978 -6.08884 -4.07495 3.13851 3.25710 3.34163 3.38300 3.79667 3.96509 4.13260 4.39147 4.63162 4.74676 4.85316 4.95284 5.13493 5.18284 5.28051 5.29894 5.43887 5.48279 5.58959 5.65321 5.72475 5.79636 5.85323 5.89430 5.94734 6.08701 6.10792 6.20490 6.25967 6.34618 6.64857 6.91600 6.96378 7.24970 7.34921 7.60956 8.26006 8.47120 8.93436 9.01553 9.51354 11.04691 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.030950 B = 0.006198 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.467772 B = 4516.358822 C = 4754.763989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.593 5.593 3 C 0.217 3.783 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.875 3.125 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.264 1.264 12 C 0.540 3.460 13 O -0.540 6.540 14 C -0.178 4.178 15 H 0.117 0.883 16 C -0.142 4.142 17 C -0.101 4.101 18 C -0.084 4.084 19 C 0.058 3.942 20 N -0.691 5.691 21 C 0.058 3.942 22 C -0.077 4.077 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.040 0.960 27 H 0.024 0.976 28 H 0.264 0.736 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.341 0.659 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.076 0.924 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.299 -12.374 -11.755 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.324 5.324 3 C 0.096 3.904 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.702 3.298 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.188 1.188 12 C 0.327 3.673 13 O -0.418 6.418 14 C -0.199 4.199 15 H 0.135 0.865 16 C -0.179 4.179 17 C -0.102 4.102 18 C -0.122 4.122 19 C -0.071 4.071 20 N -0.322 5.322 21 C -0.071 4.071 22 C -0.115 4.115 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.158 0.842 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.197 -12.745 -11.739 19.617 hybrid contribution -0.238 1.602 0.035 1.620 sum -9.436 -11.142 -11.704 18.713 Atomic orbital electron populations 1.21680 0.81274 1.01419 1.01421 1.47710 1.06061 1.06938 1.71737 1.19666 0.92452 0.79917 0.98348 1.21334 1.36873 1.07161 0.91308 0.90830 1.24865 0.95237 0.97369 0.95583 1.69895 1.41544 1.23520 1.18665 0.86862 0.78924 0.80772 0.83285 1.20126 1.20872 1.18845 1.19335 0.87310 0.84004 0.76653 1.90658 1.13842 1.87062 1.50191 1.22467 1.03621 0.93067 1.00726 0.86468 1.22997 0.98613 0.95238 1.01064 1.21490 0.97703 1.01193 0.89811 1.21251 0.97308 0.98907 0.94701 1.21953 0.91302 0.94030 0.99845 1.60106 1.10335 1.42641 1.19149 1.21948 0.96602 0.97782 0.90761 1.21227 0.92551 0.97685 1.00052 0.93010 0.92253 0.91727 0.94174 0.95832 0.92562 0.87587 0.88356 0.90659 0.90721 0.90900 0.94319 0.84198 0.90888 0.94780 0.90548 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.37 9.65 59.85 0.58 1.95 16 2 N -0.59 -12.41 2.86 -182.95 -0.52 -12.94 16 3 C 0.22 5.38 4.27 -5.20 -0.02 5.36 16 4 C -0.53 -15.48 9.94 -34.44 -0.34 -15.82 16 5 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -28.05 13.96 55.43 0.77 -27.27 16 8 Si 0.87 21.75 27.47 -169.99 -4.67 17.08 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 12 C 0.54 11.26 5.90 -10.99 -0.06 11.19 16 13 O -0.54 -13.57 15.61 5.56 0.09 -13.48 16 14 C -0.18 -2.75 4.11 -91.87 -0.38 -3.13 16 15 H 0.12 1.64 7.92 -51.93 -0.41 1.23 16 16 C -0.14 -1.95 9.51 -26.84 -0.26 -2.20 16 17 C -0.10 -1.29 2.02 -154.54 -0.31 -1.60 16 18 C -0.08 -1.13 5.52 -26.49 -0.15 -1.28 16 19 C 0.06 0.69 6.55 -3.74 -0.02 0.67 16 20 N -0.69 -6.96 6.77 -113.62 -0.77 -7.73 16 21 C 0.06 0.55 6.55 -3.74 -0.02 0.52 16 22 C -0.08 -0.78 5.87 -26.48 -0.16 -0.93 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.78 4.50 -51.93 -0.23 0.55 16 25 H 0.06 0.96 7.89 -51.93 -0.41 0.55 16 26 H 0.04 1.07 6.48 -51.93 -0.34 0.74 16 27 H 0.02 0.55 7.32 -51.93 -0.38 0.17 16 28 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 29 H 0.11 1.64 7.74 -51.93 -0.40 1.24 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.04 0.51 6.87 -51.93 -0.36 0.16 16 35 H 0.34 2.82 8.90 -39.29 -0.35 2.47 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.03 0.34 6.43 -51.93 -0.33 0.00 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 LS Contribution 306.75 15.07 4.62 4.62 Total: -1.00 -33.96 306.75 -7.83 -41.78 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.10 Total: 1.19 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -1.24 Total: -3.25 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: -0.52 Total: -47.94 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.09 Total: -13.48 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.96 -7.83 -41.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069792169.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.931 kcal (2) G-P(sol) polarization free energy of solvation -33.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds