Wall clock time and date at job start Mon Mar 30 2020 04:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99982 * 2 1 4 4 H 1.48501 * 109.46957 * 271.93677 * 3 2 1 5 5 H 1.48498 * 109.47252 * 31.93862 * 3 2 1 6 6 H 1.48493 * 109.46833 * 151.93847 * 3 2 1 7 7 C 1.38814 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99789 * 339.49112 * 7 2 1 9 9 N 1.36937 * 120.00048 * 159.48924 * 7 2 1 10 10 C 1.47073 * 120.87947 * 333.52245 * 9 7 2 11 11 C 1.53243 * 108.52044 * 231.15998 * 10 9 7 12 12 N 1.46894 * 109.34321 * 306.17380 * 11 10 9 13 13 C 1.46893 * 111.00143 * 187.25247 * 12 11 10 14 14 C 1.53002 * 109.47045 * 169.99886 * 13 12 11 15 15 C 1.52999 * 109.47300 * 179.97438 * 14 13 12 16 16 C 1.54266 * 110.03280 * 292.17081 * 15 14 13 17 17 C 1.54892 * 104.19280 * 217.10298 * 16 15 14 18 18 C 1.54889 * 102.75133 * 37.93913 * 17 16 15 19 19 C 1.53874 * 110.03705 * 174.99874 * 15 14 13 20 20 C 1.46903 * 111.27021 * 63.10032 * 12 11 10 21 21 C 1.47076 * 120.87756 * 153.49835 * 9 7 2 22 22 H 0.97004 * 120.00030 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.63077 * 111.45523 * 10 9 7 24 24 H 1.09001 * 109.63537 * 350.87288 * 10 9 7 25 25 H 1.08998 * 109.49388 * 186.21072 * 11 10 9 26 26 H 1.09007 * 109.49207 * 66.13495 * 11 10 9 27 27 H 1.09001 * 109.47291 * 49.99917 * 13 12 11 28 28 H 1.08997 * 109.47133 * 289.99457 * 13 12 11 29 29 H 1.09001 * 109.47051 * 59.99884 * 14 13 12 30 30 H 1.09001 * 109.47251 * 299.99944 * 14 13 12 31 31 H 1.09008 * 110.05252 * 53.58470 * 15 14 13 32 32 H 1.08996 * 110.48761 * 335.77752 * 16 15 14 33 33 H 1.08999 * 110.48843 * 98.42965 * 16 15 14 34 34 H 1.09001 * 110.75453 * 279.62449 * 17 16 15 35 35 H 1.09004 * 110.91474 * 156.32927 * 17 16 15 36 36 H 1.09001 * 110.48873 * 203.38160 * 18 17 16 37 37 H 1.08999 * 110.48409 * 80.73811 * 18 17 16 38 38 H 1.08996 * 110.03700 * 238.57450 * 19 15 14 39 39 H 1.08995 * 110.02876 * 359.95377 * 19 15 14 40 40 H 1.08998 * 109.49271 * 56.85265 * 20 12 11 41 41 H 1.08998 * 109.49199 * 176.93883 * 20 12 11 42 42 H 1.09000 * 109.62638 * 248.54360 * 21 9 7 43 43 H 1.08993 * 109.63062 * 9.12815 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4567 2.0701 -1.3993 5 1 1.4688 2.6405 0.7406 6 1 3.5676 1.4287 0.6586 7 6 2.0103 -1.2022 0.0005 8 1 1.5216 -2.1077 0.3287 9 7 3.3146 -1.2399 -0.4150 10 6 3.8317 -0.2477 -1.3695 11 6 4.5290 -0.9908 -2.5141 12 7 5.5376 -1.9030 -1.9588 13 6 6.3460 -2.5068 -3.0264 14 6 7.5341 -3.2476 -2.4095 15 6 8.3757 -3.8770 -3.5214 16 6 7.5853 -5.0123 -4.2042 17 6 8.6558 -6.0887 -4.5119 18 6 9.5753 -6.0218 -3.2673 19 6 9.6410 -4.5189 -2.9258 20 6 4.9168 -2.9368 -1.1198 21 6 4.2354 -2.2735 0.0819 22 1 -0.4850 0.8401 -0.0004 23 1 4.5461 0.4052 -0.8680 24 1 3.0065 0.3438 -1.7660 25 1 5.0136 -0.2706 -3.1733 26 1 3.7925 -1.5628 -3.0784 27 1 6.7113 -1.7248 -3.6920 28 1 5.7341 -3.2092 -3.5923 29 1 7.1688 -4.0296 -1.7439 30 1 8.1460 -2.5452 -1.8435 31 1 8.6514 -3.1200 -4.2557 32 1 6.8279 -5.4097 -3.5286 33 1 7.1262 -4.6563 -5.1265 34 1 9.2099 -5.8351 -5.4156 35 1 8.2008 -7.0749 -4.6035 36 1 10.5685 -6.4025 -3.5058 37 1 9.1393 -6.5823 -2.4403 38 1 10.5307 -4.0734 -3.3708 39 1 9.6559 -4.3812 -1.8446 40 1 4.1748 -3.4818 -1.7034 41 1 5.6827 -3.6280 -0.7679 42 1 4.9886 -1.8153 0.7229 43 1 3.6771 -3.0213 0.6450 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080723421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:53 Heat of formation + Delta-G solvation = 11.272359 kcal Electronic energy + Delta-G solvation = -19278.459023 eV Core-core repulsion = 16551.333525 eV Total energy + Delta-G solvation = -2727.125498 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.01114 -37.93939 -34.83132 -32.19119 -31.08490 -30.33019 -28.88838 -27.60415 -25.32910 -23.51139 -22.46136 -21.53752 -20.71435 -19.62331 -19.32112 -16.80352 -16.03747 -15.52469 -15.27278 -14.83522 -14.34627 -14.06398 -14.04113 -13.86643 -13.49828 -13.08068 -12.63010 -12.47496 -12.11912 -11.92703 -11.65435 -11.29650 -11.27804 -11.16084 -10.93244 -10.84410 -10.72026 -10.63480 -10.54124 -10.31145 -10.21617 -10.01190 -9.71834 -9.41759 -8.61345 -7.91121 -6.91804 -5.91626 -3.26380 3.35320 3.51823 3.57084 4.20032 4.45208 4.48344 4.56900 4.64645 5.01066 5.05736 5.21600 5.27756 5.32846 5.38007 5.48140 5.48922 5.53198 5.61393 5.69618 5.72489 5.77016 5.78348 5.84345 5.92793 6.01378 6.03152 6.08480 6.12573 6.14750 6.15765 6.25944 6.33673 6.37649 6.48447 6.62525 6.69587 6.92965 7.52908 7.55200 7.98180 8.35709 8.96909 9.75487 10.15564 11.24536 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.049170 B = 0.004273 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.321747 B = 6550.739139 C = 6680.717795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.021 3.979 3 Si 0.884 3.116 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.258 4.258 8 H 0.085 0.915 9 N -0.609 5.609 10 C 0.130 3.870 11 C 0.044 3.956 12 N -0.536 5.536 13 C 0.055 3.945 14 C -0.107 4.107 15 C -0.091 4.091 16 C -0.121 4.121 17 C -0.126 4.126 18 C -0.125 4.125 19 C -0.121 4.121 20 C 0.041 3.959 21 C 0.152 3.848 22 H 0.262 0.738 23 H 0.032 0.968 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.028 0.972 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.030 0.970 41 H 0.068 0.932 42 H 0.029 0.971 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.386 -9.257 -8.234 22.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.715 3.285 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.386 4.386 8 H 0.103 0.897 9 N -0.333 5.333 10 C 0.004 3.996 11 C -0.086 4.086 12 N -0.261 5.261 13 C -0.073 4.073 14 C -0.145 4.145 15 C -0.110 4.110 16 C -0.158 4.158 17 C -0.164 4.164 18 C -0.162 4.162 19 C -0.158 4.158 20 C -0.089 4.089 21 C 0.025 3.975 22 H 0.072 0.928 23 H 0.050 0.950 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.085 0.915 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.049 0.951 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 18.512 -8.887 -7.899 22.002 hybrid contribution -0.158 0.551 -0.589 0.822 sum 18.354 -8.337 -8.488 21.873 Atomic orbital electron populations 1.69841 1.05720 1.26514 1.53365 1.25260 0.95244 0.97609 0.99646 0.86934 0.79991 0.84506 0.77073 1.21641 1.23212 1.19460 1.18945 0.84814 0.94802 1.40069 0.89720 1.44413 1.08473 1.32226 1.48221 1.21427 0.96438 0.91972 0.89738 1.22615 0.92869 0.95523 0.97554 1.61931 1.24256 1.18947 1.20962 1.22121 0.94575 0.97277 0.93352 1.21723 0.96155 0.99374 0.97258 1.21769 0.94828 0.97129 0.97290 1.22470 0.97627 0.95457 1.00258 1.22502 0.97119 0.98884 0.97870 1.22355 0.99379 0.96558 0.97956 1.22207 0.97478 0.95162 1.00972 1.22665 0.96657 0.93254 0.96289 1.21009 0.92008 0.91537 0.92909 0.92815 0.94999 0.90829 0.91805 0.94805 0.91549 0.95333 0.91781 0.91296 0.91245 0.91453 0.91929 0.91797 0.91864 0.92070 0.91721 0.92129 0.91591 0.95139 0.91406 0.95276 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.41 13.97 55.49 0.78 -27.63 16 2 C 0.02 0.62 5.24 -17.43 -0.09 0.53 16 3 Si 0.88 22.93 24.31 -169.99 -4.13 18.80 16 4 H -0.29 -7.18 6.58 56.52 0.37 -6.80 16 5 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 6 H -0.27 -6.95 6.61 56.52 0.37 -6.57 16 7 C -0.26 -7.41 10.08 -15.06 -0.15 -7.56 16 8 H 0.09 2.58 8.06 -52.48 -0.42 2.15 16 9 N -0.61 -15.11 2.82 -172.01 -0.48 -15.59 16 10 C 0.13 2.98 4.35 -3.60 -0.02 2.96 16 11 C 0.04 0.83 5.62 -3.70 -0.02 0.81 16 12 N -0.54 -9.21 4.63 -234.32 -1.08 -10.29 16 13 C 0.05 0.75 4.82 -3.83 -0.02 0.73 16 14 C -0.11 -1.24 4.27 -26.73 -0.11 -1.35 16 15 C -0.09 -0.88 2.93 -89.50 -0.26 -1.14 16 16 C -0.12 -1.14 5.53 -25.07 -0.14 -1.28 16 17 C -0.13 -1.04 6.91 -24.74 -0.17 -1.21 16 18 C -0.12 -1.01 6.83 -25.07 -0.17 -1.18 16 19 C -0.12 -1.05 6.46 -25.62 -0.17 -1.22 16 20 C 0.04 0.71 5.46 -3.70 -0.02 0.69 16 21 C 0.15 3.13 6.69 -3.60 -0.02 3.11 16 22 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 23 H 0.03 0.74 6.94 -51.93 -0.36 0.38 16 24 H 0.07 1.81 4.61 -51.93 -0.24 1.57 16 25 H 0.06 1.07 7.99 -51.93 -0.41 0.65 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.86 7.97 -51.93 -0.41 0.45 16 28 H 0.03 0.39 7.49 -51.93 -0.39 0.01 16 29 H 0.06 0.76 6.26 -51.93 -0.33 0.44 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 32 H 0.07 0.69 7.76 -51.93 -0.40 0.29 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.59 7.67 -51.93 -0.40 0.19 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 1.01 6.16 -51.93 -0.32 0.69 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 1.28 7.95 -51.93 -0.41 0.87 16 LS Contribution 317.93 15.07 4.79 4.79 Total: -1.00 -30.73 317.93 -9.44 -40.17 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -7.94 Total: -4.13 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -1.36 Total: -6.11 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.79 Total: -53.51 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.13 Total: 18.80 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.73 -9.44 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080723421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.440 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds