Wall clock time and date at job start Mon Mar 30 2020 04:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99982 * 2 1 4 4 H 1.48501 * 109.46957 * 271.93677 * 3 2 1 5 5 H 1.48498 * 109.47252 * 31.93862 * 3 2 1 6 6 H 1.48493 * 109.46833 * 151.93847 * 3 2 1 7 7 C 1.38814 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99789 * 339.49112 * 7 2 1 9 9 N 1.36937 * 120.00048 * 159.48924 * 7 2 1 10 10 C 1.47073 * 120.87947 * 333.52245 * 9 7 2 11 11 C 1.53243 * 108.52044 * 231.15998 * 10 9 7 12 12 N 1.46894 * 109.34321 * 306.17380 * 11 10 9 13 13 C 1.46893 * 111.00143 * 187.25247 * 12 11 10 14 14 C 1.53002 * 109.47045 * 169.99886 * 13 12 11 15 15 C 1.52999 * 109.47300 * 179.97438 * 14 13 12 16 16 C 1.54266 * 110.03280 * 292.17081 * 15 14 13 17 17 C 1.54892 * 104.19280 * 217.10298 * 16 15 14 18 18 C 1.54889 * 102.75133 * 37.93913 * 17 16 15 19 19 C 1.53874 * 110.03705 * 174.99874 * 15 14 13 20 20 C 1.46903 * 111.27021 * 63.10032 * 12 11 10 21 21 C 1.47076 * 120.87756 * 153.49835 * 9 7 2 22 22 H 0.97004 * 120.00030 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.63077 * 111.45523 * 10 9 7 24 24 H 1.09001 * 109.63537 * 350.87288 * 10 9 7 25 25 H 1.08998 * 109.49388 * 186.21072 * 11 10 9 26 26 H 1.09007 * 109.49207 * 66.13495 * 11 10 9 27 27 H 1.09001 * 109.47291 * 49.99917 * 13 12 11 28 28 H 1.08997 * 109.47133 * 289.99457 * 13 12 11 29 29 H 1.09001 * 109.47051 * 59.99884 * 14 13 12 30 30 H 1.09001 * 109.47251 * 299.99944 * 14 13 12 31 31 H 1.09008 * 110.05252 * 53.58470 * 15 14 13 32 32 H 1.08996 * 110.48761 * 335.77752 * 16 15 14 33 33 H 1.08999 * 110.48843 * 98.42965 * 16 15 14 34 34 H 1.09001 * 110.75453 * 279.62449 * 17 16 15 35 35 H 1.09004 * 110.91474 * 156.32927 * 17 16 15 36 36 H 1.09001 * 110.48873 * 203.38160 * 18 17 16 37 37 H 1.08999 * 110.48409 * 80.73811 * 18 17 16 38 38 H 1.08996 * 110.03700 * 238.57450 * 19 15 14 39 39 H 1.08995 * 110.02876 * 359.95377 * 19 15 14 40 40 H 1.08998 * 109.49271 * 56.85265 * 20 12 11 41 41 H 1.08998 * 109.49199 * 176.93883 * 20 12 11 42 42 H 1.09000 * 109.62638 * 248.54360 * 21 9 7 43 43 H 1.08993 * 109.63062 * 9.12815 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4567 2.0701 -1.3993 5 1 1.4688 2.6405 0.7406 6 1 3.5676 1.4287 0.6586 7 6 2.0103 -1.2022 0.0005 8 1 1.5216 -2.1077 0.3287 9 7 3.3146 -1.2399 -0.4150 10 6 3.8317 -0.2477 -1.3695 11 6 4.5290 -0.9908 -2.5141 12 7 5.5376 -1.9030 -1.9588 13 6 6.3460 -2.5068 -3.0264 14 6 7.5341 -3.2476 -2.4095 15 6 8.3757 -3.8770 -3.5214 16 6 7.5853 -5.0123 -4.2042 17 6 8.6558 -6.0887 -4.5119 18 6 9.5753 -6.0218 -3.2673 19 6 9.6410 -4.5189 -2.9258 20 6 4.9168 -2.9368 -1.1198 21 6 4.2354 -2.2735 0.0819 22 1 -0.4850 0.8401 -0.0004 23 1 4.5461 0.4052 -0.8680 24 1 3.0065 0.3438 -1.7660 25 1 5.0136 -0.2706 -3.1733 26 1 3.7925 -1.5628 -3.0784 27 1 6.7113 -1.7248 -3.6920 28 1 5.7341 -3.2092 -3.5923 29 1 7.1688 -4.0296 -1.7439 30 1 8.1460 -2.5452 -1.8435 31 1 8.6514 -3.1200 -4.2557 32 1 6.8279 -5.4097 -3.5286 33 1 7.1262 -4.6563 -5.1265 34 1 9.2099 -5.8351 -5.4156 35 1 8.2008 -7.0749 -4.6035 36 1 10.5685 -6.4025 -3.5058 37 1 9.1393 -6.5823 -2.4403 38 1 10.5307 -4.0734 -3.3708 39 1 9.6559 -4.3812 -1.8446 40 1 4.1748 -3.4818 -1.7034 41 1 5.6827 -3.6280 -0.7679 42 1 4.9886 -1.8153 0.7229 43 1 3.6771 -3.0213 0.6450 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080723421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:53 Heat of formation + Delta-G solvation = -7.837197 kcal Electronic energy + Delta-G solvation = -19279.287676 eV Core-core repulsion = 16551.333525 eV Total energy + Delta-G solvation = -2727.954150 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.17259 -39.07242 -36.45472 -33.92698 -32.55812 -31.93166 -29.58431 -28.98459 -26.69834 -25.17344 -24.12839 -22.73247 -21.49250 -20.93791 -20.37235 -18.81493 -17.40803 -16.68888 -16.38874 -16.18608 -15.87870 -15.61843 -15.39571 -15.34308 -14.60031 -14.35734 -14.16633 -13.91413 -13.63553 -13.23063 -13.21076 -12.68757 -12.44587 -12.22672 -12.04500 -11.93265 -11.87410 -11.82928 -11.70396 -11.55903 -11.49599 -11.41881 -11.22782 -11.11143 -10.71557 -9.35432 -8.91132 -8.18785 -5.50441 1.28752 1.40717 1.50983 2.40226 2.88349 3.05869 3.34629 3.73451 3.78842 3.87119 4.10268 4.15798 4.20874 4.29922 4.44570 4.49208 4.54889 4.58366 4.61704 4.65053 4.74910 4.76371 4.77741 4.82960 4.83599 4.92508 4.98750 4.99751 5.03858 5.13300 5.24492 5.27120 5.30536 5.31961 5.46026 5.52534 5.61198 5.80615 6.07613 6.12778 6.25006 6.87493 7.58768 8.01821 9.01189 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.049170 B = 0.004273 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.321747 B = 6550.739139 C = 6680.717795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.035 4.035 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.309 1.309 6 H -0.265 1.265 7 C -0.252 4.252 8 H 0.052 0.948 9 N -0.624 5.624 10 C 0.125 3.875 11 C 0.053 3.947 12 N -0.541 5.541 13 C 0.057 3.943 14 C -0.099 4.099 15 C -0.087 4.087 16 C -0.123 4.123 17 C -0.125 4.125 18 C -0.125 4.125 19 C -0.120 4.120 20 C 0.052 3.948 21 C 0.146 3.854 22 H 0.262 0.738 23 H 0.035 0.965 24 H 0.053 0.947 25 H 0.092 0.908 26 H 0.020 0.980 27 H 0.078 0.922 28 H 0.028 0.972 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.017 0.983 41 H 0.098 0.902 42 H 0.036 0.964 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.291 -9.266 -9.314 25.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.230 4.230 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.238 1.238 6 H -0.190 1.190 7 C -0.381 4.381 8 H 0.070 0.930 9 N -0.350 5.350 10 C 0.000 4.000 11 C -0.077 4.077 12 N -0.266 5.266 13 C -0.070 4.070 14 C -0.137 4.137 15 C -0.106 4.106 16 C -0.160 4.160 17 C -0.162 4.162 18 C -0.162 4.162 19 C -0.158 4.158 20 C -0.077 4.077 21 C 0.021 3.979 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.111 0.889 26 H 0.039 0.961 27 H 0.096 0.904 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.035 0.965 41 H 0.117 0.883 42 H 0.054 0.946 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 21.470 -8.917 -8.997 24.929 hybrid contribution -1.045 0.447 -0.250 1.164 sum 20.425 -8.470 -9.247 23.968 Atomic orbital electron populations 1.69966 1.07376 1.27303 1.55748 1.25890 0.95868 1.00993 1.00247 0.85872 0.78438 0.80010 0.77819 1.19747 1.23750 1.18970 1.18895 0.86588 0.93704 1.38932 0.93018 1.44560 1.07747 1.33539 1.49110 1.21455 0.95993 0.91974 0.90565 1.22435 0.93119 0.96099 0.96035 1.61935 1.23464 1.18995 1.22162 1.22201 0.94549 0.97668 0.92572 1.21651 0.95410 0.98937 0.97671 1.21735 0.94936 0.97213 0.96738 1.22470 0.97753 0.95834 0.99980 1.22504 0.96805 0.98665 0.98236 1.22365 0.99938 0.96165 0.97766 1.22203 0.97230 0.95514 1.00822 1.22501 0.96979 0.93283 0.94898 1.21192 0.91542 0.90683 0.94517 0.92862 0.94701 0.92850 0.88933 0.96120 0.90382 0.95393 0.92184 0.91523 0.90804 0.92484 0.91969 0.91119 0.91517 0.90997 0.92011 0.91297 0.91839 0.96493 0.88347 0.94567 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.35 13.97 21.65 0.30 -61.05 16 2 C -0.04 -2.12 5.24 84.86 0.44 -1.67 16 3 Si 0.95 47.79 24.31 68.60 1.67 49.45 16 4 H -0.27 -12.74 6.58 99.48 0.65 -12.08 16 5 H -0.31 -15.65 7.11 99.48 0.71 -14.95 16 6 H -0.26 -12.98 6.61 99.48 0.66 -12.33 16 7 C -0.25 -14.79 10.08 84.03 0.85 -13.94 16 8 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 9 N -0.62 -30.83 2.82 -698.13 -1.97 -32.79 16 10 C 0.13 5.55 4.35 86.35 0.38 5.93 16 11 C 0.05 1.88 5.62 86.39 0.49 2.37 16 12 N -0.54 -17.18 4.63 -895.25 -4.14 -21.32 16 13 C 0.06 1.40 4.82 86.31 0.42 1.81 16 14 C -0.10 -2.00 4.27 30.59 0.13 -1.87 16 15 C -0.09 -1.44 2.93 -10.07 -0.03 -1.47 16 16 C -0.12 -2.04 5.53 31.67 0.18 -1.87 16 17 C -0.12 -1.74 6.91 31.89 0.22 -1.52 16 18 C -0.12 -1.70 6.83 31.67 0.22 -1.48 16 19 C -0.12 -1.76 6.46 31.32 0.20 -1.56 16 20 C 0.05 1.74 5.46 86.38 0.47 2.21 16 21 C 0.15 5.89 6.69 86.35 0.58 6.47 16 22 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 23 H 0.04 1.54 6.94 -2.38 -0.02 1.52 16 24 H 0.05 2.57 4.61 -2.39 -0.01 2.56 16 25 H 0.09 2.79 7.99 -2.39 -0.02 2.77 16 26 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.08 1.75 7.97 -2.39 -0.02 1.73 16 28 H 0.03 0.70 7.49 -2.39 -0.02 0.68 16 29 H 0.06 1.26 6.26 -2.39 -0.01 1.25 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.06 1.06 7.76 -2.39 -0.02 1.04 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 0.97 7.67 -2.39 -0.02 0.95 16 40 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.10 2.68 6.16 -2.39 -0.01 2.66 16 42 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.06 2.43 7.95 -2.39 -0.02 2.41 16 Total: -1.00 -66.26 317.93 1.23 -65.02 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 0.84 Total: 7.27 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 4.53 Total: -6.59 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -5.81 Total: -115.16 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 1.67 Total: 49.45 kcal Total: -66.26 1.23 -65.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080723421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.188 kcal (2) G-P(sol) polarization free energy of solvation -66.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds