Wall clock time and date at job start Mon Mar 30 2020 04:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00114 * 2 1 4 4 H 1.48506 * 109.46515 * 269.99680 * 3 2 1 5 5 H 1.48498 * 109.47361 * 29.99318 * 3 2 1 6 6 H 1.48495 * 109.47129 * 149.99904 * 3 2 1 7 7 C 1.37878 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00000 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47166 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47138 * 179.97438 * 10 9 7 12 12 C 1.46849 * 110.99939 * 169.99865 * 11 10 9 13 13 C 1.53039 * 109.52021 * 185.83827 * 12 11 10 14 14 C 1.53123 * 109.28206 * 300.81968 * 13 12 11 15 15 C 1.53000 * 109.52464 * 177.56138 * 14 13 12 16 16 N 1.46894 * 109.46854 * 175.12576 * 15 14 13 17 17 C 1.46906 * 110.99682 * 179.97438 * 16 15 14 18 18 C 1.53002 * 117.49799 * 223.74616 * 17 16 15 19 19 C 1.53000 * 117.49653 * 155.09047 * 17 16 15 20 20 C 1.53116 * 109.20960 * 57.61992 * 14 13 12 21 21 C 1.46852 * 110.99893 * 294.20884 * 11 10 9 22 22 H 0.97008 * 119.99900 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47603 * 59.99155 * 9 7 2 24 24 H 1.09009 * 109.46610 * 299.99449 * 9 7 2 25 25 H 1.09000 * 109.47260 * 59.99300 * 10 9 7 26 26 H 1.08999 * 109.47151 * 299.99605 * 10 9 7 27 27 H 1.09003 * 109.46410 * 65.82576 * 12 11 10 28 28 H 1.08993 * 109.45446 * 305.84772 * 12 11 10 29 29 H 1.09003 * 109.50126 * 180.87784 * 13 12 11 30 30 H 1.09003 * 109.50730 * 60.76464 * 13 12 11 31 31 H 1.09003 * 109.51698 * 297.68787 * 14 13 12 32 32 H 1.09001 * 109.47016 * 55.12920 * 15 14 13 33 33 H 1.09003 * 109.46908 * 295.12746 * 15 14 13 34 34 H 1.00906 * 111.00209 * 56.05033 * 16 15 14 35 35 H 1.08998 * 115.54836 * 9.41750 * 17 16 15 36 36 H 1.09000 * 117.49996 * 0.02562 * 18 17 16 37 37 H 1.08999 * 117.49664 * 145.02062 * 18 17 16 38 38 H 1.09000 * 117.49640 * 214.98222 * 19 17 16 39 39 H 1.08999 * 117.49942 * 359.97356 * 19 17 16 40 40 H 1.09010 * 109.50106 * 62.32535 * 20 14 13 41 41 H 1.09005 * 109.50207 * 182.43422 * 20 14 13 42 42 H 1.08998 * 109.45837 * 294.17288 * 21 11 10 43 43 H 1.09000 * 109.46398 * 54.15669 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0462 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5107 -4.9342 0.0012 12 6 2.4167 -6.0651 -0.2369 13 6 1.6017 -7.3531 -0.3744 14 6 0.7965 -7.5813 0.9079 15 6 -0.0669 -8.8349 0.7534 16 7 -0.7494 -9.1189 2.0227 17 6 -1.5900 -10.3185 1.9115 18 6 -2.9909 -10.2587 2.5238 19 6 -1.8955 -11.0888 3.1977 20 6 -0.1031 -6.3683 1.1605 21 6 0.7611 -5.1085 1.2519 22 1 -0.4850 0.8401 -0.0004 23 1 0.6245 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8904 25 1 2.8719 -3.6043 0.8904 26 1 2.8718 -3.6044 -0.8895 27 1 3.1072 -6.1600 0.6011 28 1 2.9800 -5.8922 -1.1539 29 1 2.2755 -8.1947 -0.5355 30 1 0.9206 -7.2644 -1.2208 31 1 1.4787 -7.7101 1.7483 32 1 0.5657 -9.6807 0.4838 33 1 -0.8080 -8.6715 -0.0291 34 1 -1.2920 -8.3245 2.3272 35 1 -1.4651 -10.8968 0.9961 36 1 -3.2889 -9.3292 3.0088 37 1 -3.7875 -10.7981 2.0114 38 1 -1.9718 -12.1739 3.1284 39 1 -1.4723 -10.7057 4.1263 40 1 -0.8118 -6.2635 0.3389 41 1 -0.6466 -6.5066 2.0952 42 1 1.4594 -5.2079 2.0829 43 1 0.1220 -4.2410 1.4162 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082645763.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:13 Heat of formation + Delta-G solvation = 8.780785 kcal Electronic energy + Delta-G solvation = -18561.337008 eV Core-core repulsion = 15834.103467 eV Total energy + Delta-G solvation = -2727.233541 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.12697 -37.85018 -35.19875 -33.16488 -31.79457 -30.53229 -29.17345 -26.03426 -23.86685 -23.09096 -22.58567 -21.54985 -21.31260 -20.02302 -19.38602 -16.48608 -16.23839 -15.89478 -15.26492 -14.64444 -14.51472 -14.26436 -13.85005 -13.81194 -13.44192 -13.02509 -12.64462 -12.44264 -12.23183 -11.80937 -11.73707 -11.68924 -11.14797 -11.11875 -10.92801 -10.89769 -10.69641 -10.57907 -10.45834 -10.17982 -10.03900 -9.75105 -9.27168 -9.08812 -8.42230 -8.30921 -7.64560 -5.97874 -4.00029 3.33188 3.39214 3.42502 3.56809 3.86804 4.40558 4.57656 4.66738 4.72053 4.82023 4.90916 4.97169 5.06650 5.37520 5.37903 5.41054 5.46036 5.50413 5.58337 5.65438 5.72486 5.73643 5.83703 5.90861 6.02610 6.04685 6.11122 6.17925 6.31884 6.32835 6.47818 6.57744 6.62150 6.88573 7.01061 7.15630 7.56754 7.64938 7.84498 7.93743 8.11481 8.46195 9.07305 9.63420 11.13502 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.038845 B = 0.003451 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.638527 B = 8112.051197 C = 8629.730741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.028 3.972 10 C 0.063 3.937 11 N -0.538 5.538 12 C 0.056 3.944 13 C -0.108 4.108 14 C -0.087 4.087 15 C 0.067 3.933 16 N -0.660 5.660 17 C 0.023 3.977 18 C -0.209 4.209 19 C -0.174 4.174 20 C -0.111 4.111 21 C 0.056 3.944 22 H 0.260 0.740 23 H 0.024 0.976 24 H 0.017 0.983 25 H 0.018 0.982 26 H 0.060 0.940 27 H 0.025 0.975 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.034 0.966 34 H 0.345 0.655 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.024 0.976 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.195 -20.391 2.984 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.064 4.064 11 N -0.263 5.263 12 C -0.073 4.073 13 C -0.146 4.146 14 C -0.106 4.106 15 C -0.061 4.061 16 N -0.291 5.291 17 C -0.088 4.088 18 C -0.248 4.248 19 C -0.212 4.212 20 C -0.149 4.149 21 C -0.072 4.072 22 H 0.070 0.930 23 H 0.042 0.958 24 H 0.035 0.965 25 H 0.036 0.964 26 H 0.078 0.922 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.165 0.835 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.127 -20.576 2.862 20.883 hybrid contribution 0.278 1.265 0.188 1.309 sum -1.849 -19.311 3.050 19.638 Atomic orbital electron populations 1.69976 1.06009 1.26525 1.50762 1.24994 0.94835 0.99159 0.95354 0.86600 0.79812 0.83518 0.78098 1.20650 1.21235 1.19947 1.21208 0.92980 0.91115 1.50728 0.92836 1.19095 0.93981 0.90114 0.97719 1.22312 0.96713 0.88494 0.98837 1.62016 1.27442 1.02345 1.34507 1.22026 0.94031 0.91103 1.00136 1.21575 0.98729 0.96714 0.97583 1.21230 0.97173 0.93559 0.98619 1.22050 0.96632 0.97924 0.89538 1.60280 1.32381 1.05883 1.30580 1.22420 0.93525 0.95848 0.96993 1.23438 0.92786 1.03008 1.05519 1.23118 1.02265 0.98082 0.97718 1.21659 0.98023 0.93987 1.01248 1.22062 0.96808 0.98146 0.90181 0.93032 0.95786 0.96498 0.96368 0.92185 0.95720 0.91182 0.92085 0.91231 0.90779 0.91129 0.94815 0.83458 0.87502 0.88651 0.88872 0.88915 0.88445 0.91390 0.92106 0.95743 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.07 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.74 4.90 -27.88 -0.14 0.61 16 10 C 0.06 1.37 4.90 -3.83 -0.02 1.35 16 11 N -0.54 -9.94 4.66 -234.67 -1.09 -11.03 16 12 C 0.06 0.84 5.46 -3.83 -0.02 0.82 16 13 C -0.11 -1.33 5.38 -26.65 -0.14 -1.47 16 14 C -0.09 -1.04 2.46 -90.50 -0.22 -1.26 16 15 C 0.07 0.70 5.00 -3.83 -0.02 0.68 16 16 N -0.66 -6.77 6.78 -106.72 -0.72 -7.49 16 17 C 0.02 0.21 6.31 -67.71 -0.43 -0.22 16 18 C -0.21 -1.68 10.23 -26.69 -0.27 -1.96 16 19 C -0.17 -1.43 10.46 -26.70 -0.28 -1.71 16 20 C -0.11 -1.51 5.10 -26.65 -0.14 -1.64 16 21 C 0.06 0.96 5.29 -3.83 -0.02 0.94 16 22 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.02 0.47 6.43 -51.92 -0.33 0.13 16 25 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 26 H 0.06 1.28 7.99 -51.93 -0.41 0.86 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 1.03 8.01 -51.93 -0.42 0.61 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.34 3.50 6.83 -39.29 -0.27 3.23 16 35 H 0.11 0.90 7.90 -51.93 -0.41 0.49 16 36 H 0.10 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 41 H 0.06 0.74 6.80 -51.93 -0.35 0.38 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 1.67 6.21 -51.93 -0.32 1.34 16 LS Contribution 335.79 15.07 5.06 5.06 Total: -1.00 -29.87 335.79 -11.12 -41.00 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.98 Total: -0.45 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -2.11 Total: -17.56 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -1.08 Total: -44.86 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.87 -11.12 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082645763.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.779 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds