Wall clock time and date at job start Mon Mar 30 2020 04:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99930 * 2 1 4 4 H 1.48503 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47705 * 300.00318 * 3 2 1 6 6 H 1.48495 * 109.47329 * 60.00658 * 3 2 1 7 7 C 1.37876 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00119 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99993 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47082 * 180.02562 * 9 7 2 11 11 N 1.45494 * 109.46840 * 174.36159 * 10 9 7 12 12 C 1.46451 * 112.10200 * 43.47421 * 11 10 9 13 13 C 1.53069 * 109.72945 * 192.75296 * 12 11 10 14 14 N 1.47033 * 109.07726 * 304.83608 * 13 12 11 15 15 C 1.46547 * 110.88912 * 59.28077 * 14 13 12 16 16 C 1.45757 * 116.32478 * 176.26103 * 11 10 9 17 17 C 1.52131 * 112.01841 * 52.91056 * 16 11 10 18 18 C 1.51703 * 115.41851 * 271.40246 * 17 16 11 19 19 C 1.52821 * 110.90420 * 310.64799 * 18 17 16 20 20 C 1.52985 * 108.28800 * 60.48126 * 19 18 17 21 21 C 1.51987 * 112.35527 * 283.54925 * 16 11 10 22 22 H 0.97003 * 119.99612 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46648 * 60.00155 * 9 7 2 24 24 H 1.08996 * 109.47141 * 300.00488 * 9 7 2 25 25 H 1.08993 * 109.47059 * 54.36326 * 10 9 7 26 26 H 1.09001 * 109.47319 * 294.36339 * 10 9 7 27 27 H 1.09426 * 109.27727 * 312.08080 * 12 11 10 28 28 H 1.08814 * 110.47401 * 71.63407 * 12 11 10 29 29 H 1.08953 * 109.56251 * 185.01100 * 13 12 11 30 30 H 1.08937 * 109.57658 * 64.71786 * 13 12 11 31 31 H 1.00696 * 111.23711 * 294.28914 * 14 13 12 32 32 H 1.08588 * 110.33312 * 178.66871 * 15 14 13 33 33 H 1.08587 * 110.37920 * 56.05275 * 15 14 13 34 34 H 1.09888 * 109.04534 * 34.76306 * 17 16 11 35 35 H 1.10354 * 108.20405 * 149.73622 * 17 16 11 36 36 H 1.10071 * 108.90980 * 191.68825 * 18 17 16 37 37 H 1.08746 * 111.57090 * 73.41614 * 18 17 16 38 38 H 1.08920 * 109.69602 * 300.93342 * 19 18 17 39 39 H 1.08851 * 109.78008 * 180.16638 * 19 18 17 40 40 H 1.09595 * 108.71665 * 177.18232 * 20 19 18 41 41 H 1.08658 * 109.96195 * 58.59568 * 20 19 18 42 42 H 1.10166 * 108.58409 * 206.25326 * 21 16 11 43 43 H 1.09496 * 109.90128 * 322.58313 * 21 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5227 -4.9177 0.1342 12 6 0.3278 -4.9595 -0.7115 13 6 -0.5533 -6.1426 -0.3030 14 7 0.2442 -7.3766 -0.3560 15 6 1.3986 -7.2918 0.5429 16 6 2.3227 -6.1343 0.0666 17 6 3.4852 -6.1076 1.0476 18 6 4.7673 -5.4905 0.5213 19 6 5.1366 -6.0784 -0.8401 20 6 4.0004 -5.7746 -1.8184 21 6 2.7330 -6.4780 -1.3559 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5566 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 2.9364 -3.5491 0.8346 26 1 2.8036 -3.6628 -0.9367 27 1 -0.2398 -4.0332 -0.5808 28 1 0.6062 -5.0532 -1.7593 29 1 -1.3954 -6.2244 -0.9895 30 1 -0.9216 -5.9904 0.7109 31 1 0.5217 -7.5914 -1.2998 32 1 1.9678 -8.2161 0.5143 33 1 1.0739 -7.0730 1.5557 34 1 3.1745 -5.5758 1.9576 35 1 3.6987 -7.1450 1.3574 36 1 5.5846 -5.7120 1.2245 37 1 4.6889 -4.4085 0.4467 38 1 5.2640 -7.1565 -0.7521 39 1 6.0593 -5.6257 -1.1987 40 1 4.2803 -6.1489 -2.8097 41 1 3.8470 -4.7011 -1.8870 42 1 2.8947 -7.5658 -1.4215 43 1 1.9178 -6.2395 -2.0469 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083878165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:12 Heat of formation + Delta-G solvation = -9.375025 kcal Electronic energy + Delta-G solvation = -20365.370247 eV Core-core repulsion = 17637.349411 eV Total energy + Delta-G solvation = -2728.020836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.30500 -36.25626 -34.68979 -32.61170 -31.50006 -30.69698 -29.25772 -26.67767 -25.04075 -23.64609 -23.14148 -21.72420 -20.79092 -19.61058 -18.29779 -16.49943 -15.77737 -15.58362 -14.88630 -14.76714 -14.35964 -14.13260 -14.04056 -13.54331 -13.23644 -12.95739 -12.30860 -12.24258 -12.00738 -11.75688 -11.70874 -11.37203 -11.26015 -11.03077 -11.00706 -10.81840 -10.69374 -10.58149 -10.27067 -10.10017 -9.93641 -9.83218 -9.29536 -9.04510 -8.35887 -8.13671 -7.27999 -6.01534 -4.03372 3.29763 3.37394 3.41209 4.26380 4.45963 4.48175 4.80111 4.87294 4.97504 5.29294 5.31305 5.34795 5.41202 5.48004 5.52512 5.57504 5.71091 5.72973 5.78990 5.86418 5.91717 5.97601 6.09764 6.12604 6.17826 6.27293 6.33012 6.39023 6.44548 6.46369 6.51773 6.62067 6.72477 7.01521 7.17859 7.54693 7.62062 7.70254 7.89781 7.97633 8.13991 8.43915 9.03611 9.60500 11.09923 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022658 B = 0.006780 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.474733 B = 4128.774965 C = 4932.066042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.022 3.978 10 C 0.084 3.916 11 N -0.561 5.561 12 C 0.027 3.973 13 C 0.061 3.939 14 N -0.693 5.693 15 C 0.067 3.933 16 C 0.106 3.894 17 C -0.098 4.098 18 C -0.120 4.120 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.139 4.139 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.024 0.976 25 H 0.060 0.940 26 H 0.017 0.983 27 H 0.097 0.903 28 H 0.024 0.976 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.335 0.665 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.299 -14.549 -1.378 15.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.042 4.042 11 N -0.286 5.286 12 C -0.102 4.102 13 C -0.069 4.069 14 N -0.322 5.322 15 C -0.063 4.063 16 C 0.015 3.985 17 C -0.136 4.136 18 C -0.157 4.157 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.179 4.179 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.042 0.958 25 H 0.078 0.922 26 H 0.035 0.965 27 H 0.115 0.885 28 H 0.042 0.958 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.153 0.847 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.610 -14.787 -0.502 15.497 hybrid contribution 1.331 1.667 -1.360 2.530 sum 5.941 -13.120 -1.862 14.523 Atomic orbital electron populations 1.69973 1.06004 1.26457 1.50869 1.24984 0.94825 0.99161 0.95330 0.86560 0.80116 0.83886 0.77584 1.19784 1.21064 1.20965 1.21209 0.92988 0.90990 1.50551 0.92799 1.19246 0.94159 0.90690 0.97410 1.21907 0.96931 0.87061 0.98284 1.58382 1.09851 1.01769 1.58578 1.22622 0.92370 1.01313 0.93860 1.22143 0.95258 0.87000 1.02512 1.60225 1.23310 1.35641 1.12989 1.22700 0.90173 0.95834 0.97603 1.21176 0.93177 0.91249 0.92930 1.21174 0.93316 1.00687 0.98412 1.21353 0.96772 1.01285 0.96329 1.21428 0.97721 1.00254 0.95736 1.21402 0.94862 1.01478 0.97859 1.21934 0.97904 0.99957 0.98075 0.93070 0.96593 0.95778 0.92173 0.96468 0.88474 0.95788 0.90973 0.90305 0.84704 0.91310 0.90283 0.91096 0.92548 0.92846 0.91201 0.92435 0.92360 0.93034 0.91162 0.92686 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.57 3.90 -27.88 -0.11 0.46 16 10 C 0.08 1.75 4.08 -4.58 -0.02 1.73 16 11 N -0.56 -9.91 3.91 -220.71 -0.86 -10.77 16 12 C 0.03 0.47 4.80 -4.03 -0.02 0.45 16 13 C 0.06 0.88 6.78 -3.72 -0.03 0.85 16 14 N -0.69 -9.19 6.76 -112.76 -0.76 -9.96 16 15 C 0.07 0.89 4.94 -2.64 -0.01 0.88 16 16 C 0.11 1.53 0.51 -131.80 -0.07 1.46 16 17 C -0.10 -1.32 4.04 -27.83 -0.11 -1.43 16 18 C -0.12 -1.59 5.46 -27.48 -0.15 -1.74 16 19 C -0.11 -1.38 5.99 -26.83 -0.16 -1.54 16 20 C -0.12 -1.60 5.66 -27.17 -0.15 -1.75 16 21 C -0.14 -1.86 3.63 -27.68 -0.10 -1.96 16 22 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 23 H 0.02 0.43 6.54 -51.93 -0.34 0.09 16 24 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 1.28 6.35 -51.93 -0.33 0.95 16 26 H 0.02 0.37 5.58 -51.93 -0.29 0.08 16 27 H 0.10 1.95 5.64 -51.69 -0.29 1.65 16 28 H 0.02 0.42 6.41 -52.03 -0.33 0.08 16 29 H 0.07 0.94 8.14 -51.96 -0.42 0.51 16 30 H 0.08 1.21 8.14 -51.96 -0.42 0.79 16 31 H 0.34 4.13 7.32 -39.38 -0.29 3.84 16 32 H 0.07 0.80 7.69 -52.16 -0.40 0.40 16 33 H 0.08 1.13 8.10 -52.16 -0.42 0.71 16 34 H 0.07 1.06 8.08 -51.42 -0.42 0.64 16 35 H 0.06 0.66 7.63 -51.15 -0.39 0.27 16 36 H 0.05 0.63 8.23 -51.32 -0.42 0.20 16 37 H 0.07 1.08 6.42 -52.07 -0.33 0.74 16 38 H 0.06 0.63 8.14 -51.97 -0.42 0.21 16 39 H 0.06 0.67 8.13 -52.01 -0.42 0.25 16 40 H 0.05 0.63 8.19 -51.59 -0.42 0.21 16 41 H 0.07 1.12 5.84 -52.12 -0.30 0.82 16 42 H 0.05 0.65 7.76 -51.26 -0.40 0.26 16 43 H 0.06 0.84 5.32 -51.65 -0.27 0.56 16 LS Contribution 307.02 15.07 4.63 4.63 Total: -1.00 -28.89 307.02 -9.94 -38.83 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.31 Total: 2.57 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -1.34 Total: -15.97 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.89 Total: -46.71 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.89 -9.94 -38.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083878165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.457 kcal (2) G-P(sol) polarization free energy of solvation -28.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds