Wall clock time and date at job start Mon Mar 30 2020 04:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99930 * 2 1 4 4 H 1.48503 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47705 * 300.00318 * 3 2 1 6 6 H 1.48495 * 109.47329 * 60.00658 * 3 2 1 7 7 C 1.37876 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00119 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99993 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47082 * 180.02562 * 9 7 2 11 11 N 1.45494 * 109.46840 * 174.36159 * 10 9 7 12 12 C 1.46451 * 112.10200 * 43.47421 * 11 10 9 13 13 C 1.53069 * 109.72945 * 192.75296 * 12 11 10 14 14 N 1.47033 * 109.07726 * 304.83608 * 13 12 11 15 15 C 1.46547 * 110.88912 * 59.28077 * 14 13 12 16 16 C 1.45757 * 116.32478 * 176.26103 * 11 10 9 17 17 C 1.52131 * 112.01841 * 52.91056 * 16 11 10 18 18 C 1.51703 * 115.41851 * 271.40246 * 17 16 11 19 19 C 1.52821 * 110.90420 * 310.64799 * 18 17 16 20 20 C 1.52985 * 108.28800 * 60.48126 * 19 18 17 21 21 C 1.51987 * 112.35527 * 283.54925 * 16 11 10 22 22 H 0.97003 * 119.99612 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46648 * 60.00155 * 9 7 2 24 24 H 1.08996 * 109.47141 * 300.00488 * 9 7 2 25 25 H 1.08993 * 109.47059 * 54.36326 * 10 9 7 26 26 H 1.09001 * 109.47319 * 294.36339 * 10 9 7 27 27 H 1.09426 * 109.27727 * 312.08080 * 12 11 10 28 28 H 1.08814 * 110.47401 * 71.63407 * 12 11 10 29 29 H 1.08953 * 109.56251 * 185.01100 * 13 12 11 30 30 H 1.08937 * 109.57658 * 64.71786 * 13 12 11 31 31 H 1.00696 * 111.23711 * 294.28914 * 14 13 12 32 32 H 1.08588 * 110.33312 * 178.66871 * 15 14 13 33 33 H 1.08587 * 110.37920 * 56.05275 * 15 14 13 34 34 H 1.09888 * 109.04534 * 34.76306 * 17 16 11 35 35 H 1.10354 * 108.20405 * 149.73622 * 17 16 11 36 36 H 1.10071 * 108.90980 * 191.68825 * 18 17 16 37 37 H 1.08746 * 111.57090 * 73.41614 * 18 17 16 38 38 H 1.08920 * 109.69602 * 300.93342 * 19 18 17 39 39 H 1.08851 * 109.78008 * 180.16638 * 19 18 17 40 40 H 1.09595 * 108.71665 * 177.18232 * 20 19 18 41 41 H 1.08658 * 109.96195 * 58.59568 * 20 19 18 42 42 H 1.10166 * 108.58409 * 206.25326 * 21 16 11 43 43 H 1.09496 * 109.90128 * 322.58313 * 21 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5227 -4.9177 0.1342 12 6 0.3278 -4.9595 -0.7115 13 6 -0.5533 -6.1426 -0.3030 14 7 0.2442 -7.3766 -0.3560 15 6 1.3986 -7.2918 0.5429 16 6 2.3227 -6.1343 0.0666 17 6 3.4852 -6.1076 1.0476 18 6 4.7673 -5.4905 0.5213 19 6 5.1366 -6.0784 -0.8401 20 6 4.0004 -5.7746 -1.8184 21 6 2.7330 -6.4780 -1.3559 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5566 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 2.9364 -3.5491 0.8346 26 1 2.8036 -3.6628 -0.9367 27 1 -0.2398 -4.0332 -0.5808 28 1 0.6062 -5.0532 -1.7593 29 1 -1.3954 -6.2244 -0.9895 30 1 -0.9216 -5.9904 0.7109 31 1 0.5217 -7.5914 -1.2998 32 1 1.9678 -8.2161 0.5143 33 1 1.0739 -7.0730 1.5557 34 1 3.1745 -5.5758 1.9576 35 1 3.6987 -7.1450 1.3574 36 1 5.5846 -5.7120 1.2245 37 1 4.6889 -4.4085 0.4467 38 1 5.2640 -7.1565 -0.7521 39 1 6.0593 -5.6257 -1.1987 40 1 4.2803 -6.1489 -2.8097 41 1 3.8470 -4.7011 -1.8870 42 1 2.8947 -7.5658 -1.4215 43 1 1.9178 -6.2395 -2.0469 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083878165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:11 Heat of formation + Delta-G solvation = -28.597629 kcal Electronic energy + Delta-G solvation = -20366.203801 eV Core-core repulsion = 17637.349411 eV Total energy + Delta-G solvation = -2728.854390 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.53545 -37.38347 -36.36571 -34.56563 -32.67503 -31.80962 -31.04157 -28.14179 -26.45493 -25.37068 -24.28730 -22.91608 -22.26462 -21.01000 -19.58793 -18.50757 -16.96088 -16.92458 -16.59250 -16.14204 -15.99972 -15.27568 -15.24124 -14.80912 -14.61104 -14.33449 -14.17063 -13.67145 -13.24891 -13.06836 -12.99380 -12.91569 -12.76481 -12.55520 -12.39667 -12.23302 -12.15005 -12.04472 -11.76367 -11.48497 -11.20322 -11.17677 -11.14605 -10.83062 -10.57748 -9.36331 -8.68146 -8.23197 -6.34186 1.36688 1.37080 1.50268 2.37095 2.94670 3.10065 3.34878 3.74073 3.79703 3.89276 4.18767 4.19523 4.24284 4.29090 4.34782 4.39144 4.54841 4.61383 4.64240 4.71963 4.76018 4.80459 4.83264 4.90979 4.96705 5.05137 5.08228 5.09252 5.16736 5.23122 5.27771 5.40103 5.42103 5.48094 5.56316 5.66494 5.78960 6.01854 6.13793 6.43052 6.54961 6.66760 6.82885 7.35011 8.88902 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022658 B = 0.006780 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.474733 B = 4128.774965 C = 4932.066042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.035 3.965 10 C 0.108 3.892 11 N -0.569 5.569 12 C 0.032 3.968 13 C 0.072 3.928 14 N -0.685 5.685 15 C 0.072 3.928 16 C 0.100 3.900 17 C -0.098 4.098 18 C -0.121 4.121 19 C -0.107 4.107 20 C -0.120 4.120 21 C -0.136 4.136 22 H 0.264 0.736 23 H -0.007 1.007 24 H -0.009 1.009 25 H 0.053 0.947 26 H 0.013 0.987 27 H 0.057 0.943 28 H 0.023 0.977 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.345 0.655 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.037 0.963 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.035 0.965 42 H 0.084 0.916 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.878 -16.351 -1.631 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.074 0.926 9 C -0.003 4.003 10 C -0.018 4.018 11 N -0.294 5.294 12 C -0.097 4.097 13 C -0.059 4.059 14 N -0.314 5.314 15 C -0.058 4.058 16 C 0.009 3.991 17 C -0.137 4.137 18 C -0.159 4.159 19 C -0.145 4.145 20 C -0.158 4.158 21 C -0.175 4.175 22 H 0.073 0.927 23 H 0.011 0.989 24 H 0.009 0.991 25 H 0.072 0.928 26 H 0.031 0.969 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.164 0.836 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.054 0.946 42 H 0.102 0.898 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.197 -16.615 -0.760 17.750 hybrid contribution 0.814 2.200 -1.279 2.671 sum 7.011 -14.416 -2.039 16.159 Atomic orbital electron populations 1.70105 1.07716 1.27690 1.51473 1.25927 0.95754 1.03189 0.94616 0.85422 0.79028 0.78840 0.77909 1.18741 1.20249 1.20187 1.21615 0.93316 0.92380 1.50792 0.92638 1.19038 0.94232 0.92350 0.94636 1.21432 0.95351 0.87345 0.97713 1.58344 1.10306 1.01873 1.58893 1.22547 0.92319 1.00938 0.93858 1.22023 0.95326 0.86277 1.02232 1.60222 1.23340 1.34117 1.13724 1.22737 0.89924 0.96311 0.96828 1.21404 0.93673 0.89719 0.94261 1.21198 0.92966 1.02255 0.97231 1.21343 0.97363 0.99383 0.97811 1.21407 0.97194 1.01624 0.94236 1.21393 0.95706 0.99340 0.99347 1.21874 0.97385 1.01613 0.96624 0.92742 0.98866 0.99073 0.92817 0.96909 0.92425 0.95933 0.89205 0.91357 0.83606 0.88291 0.91456 0.93129 0.89428 0.90997 0.94386 0.90023 0.91784 0.91463 0.94630 0.89784 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.96 45.04 29.54 68.60 2.03 47.06 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.54 -31.74 9.11 25.60 0.23 -31.51 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.03 1.89 3.90 29.85 0.12 2.01 16 10 C 0.11 4.75 4.08 86.57 0.35 5.10 16 11 N -0.57 -20.63 3.91 -852.20 -3.33 -23.97 16 12 C 0.03 1.16 4.80 86.41 0.42 1.58 16 13 C 0.07 2.04 6.78 86.30 0.58 2.62 16 14 N -0.69 -16.59 6.76 -510.67 -3.45 -20.05 16 15 C 0.07 1.72 4.94 87.26 0.43 2.15 16 16 C 0.10 2.74 0.51 4.01 0.00 2.74 16 17 C -0.10 -2.48 4.04 29.88 0.12 -2.36 16 18 C -0.12 -3.03 5.46 30.11 0.16 -2.87 16 19 C -0.11 -2.31 5.99 30.53 0.18 -2.13 16 20 C -0.12 -3.05 5.66 30.31 0.17 -2.88 16 21 C -0.14 -3.32 3.63 29.98 0.11 -3.22 16 22 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 23 H -0.01 -0.40 6.54 -2.38 -0.02 -0.42 16 24 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 25 H 0.05 2.40 6.35 -2.39 -0.02 2.39 16 26 H 0.01 0.58 5.58 -2.39 -0.01 0.56 16 27 H 0.06 2.50 5.64 -2.16 -0.01 2.49 16 28 H 0.02 0.81 6.41 -2.49 -0.02 0.79 16 29 H 0.09 2.25 8.14 -2.41 -0.02 2.23 16 30 H 0.07 2.11 8.14 -2.42 -0.02 2.09 16 31 H 0.34 7.48 7.32 -89.86 -0.66 6.82 16 32 H 0.10 1.83 7.69 -2.60 -0.02 1.81 16 33 H 0.07 1.80 8.10 -2.60 -0.02 1.77 16 34 H 0.05 1.48 8.08 -1.91 -0.02 1.47 16 35 H 0.09 1.70 7.63 -1.66 -0.01 1.68 16 36 H 0.07 1.52 8.23 -1.81 -0.01 1.50 16 37 H 0.04 1.18 6.42 -2.52 -0.02 1.16 16 38 H 0.08 1.41 8.14 -2.43 -0.02 1.39 16 39 H 0.06 1.31 8.13 -2.47 -0.02 1.29 16 40 H 0.07 1.48 8.19 -2.07 -0.02 1.46 16 41 H 0.03 1.14 5.84 -2.57 -0.01 1.13 16 42 H 0.08 1.62 7.76 -1.76 -0.01 1.61 16 43 H 0.05 1.26 5.32 -2.12 -0.01 1.25 16 Total: -1.00 -64.64 307.02 -0.79 -65.43 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.34 Total: 16.70 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: 3.35 Total: -28.11 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -6.50 Total: -101.08 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -64.64 -0.79 -65.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083878165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.829 kcal (2) G-P(sol) polarization free energy of solvation -64.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds