Wall clock time and date at job start Mon Mar 30 2020 04:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53011 * 109.46898 * 2 1 4 4 C 1.50701 * 109.47334 * 119.99648 * 2 1 3 5 5 N 1.30980 * 125.77360 * 300.00287 * 4 2 1 6 6 N 1.40064 * 108.47065 * 179.74119 * 5 4 2 7 7 C 1.46501 * 126.08028 * 180.29559 * 6 5 4 8 8 C 1.36085 * 107.83803 * 0.42131 * 6 5 4 9 9 N 1.39702 * 126.28243 * 179.84399 * 8 6 5 10 10 C 1.46900 * 110.99974 * 117.12147 * 9 8 6 11 11 C 1.46898 * 111.00288 * 241.07425 * 9 8 6 12 12 C 1.50701 * 109.47241 * 164.30348 * 11 9 8 13 13 H 1.08000 * 120.00232 * 0.02562 * 12 11 9 14 14 C 1.37876 * 119.99944 * 179.72393 * 12 11 9 15 15 N 1.31510 * 119.99933 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99889 * 180.02562 * 14 12 11 17 17 H 1.48489 * 109.47030 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47073 * 120.00314 * 16 14 12 19 19 H 1.48500 * 109.47080 * 239.99844 * 16 14 12 20 20 C 1.36403 * 107.43075 * 359.58586 * 8 6 5 21 21 N 1.41388 * 126.09630 * 180.23865 * 20 8 6 22 22 H 1.09003 * 109.47139 * 59.99936 * 1 2 3 23 23 H 1.09002 * 109.46856 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47264 * 300.00119 * 1 2 3 25 25 H 1.08995 * 109.47264 * 239.99881 * 2 1 3 26 26 H 1.08995 * 109.46783 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46700 * 299.99496 * 3 2 1 28 28 H 1.09000 * 109.46822 * 59.99726 * 3 2 1 29 29 H 1.09001 * 109.46782 * 275.05283 * 7 6 5 30 30 H 1.09001 * 109.47294 * 35.05144 * 7 6 5 31 31 H 1.09000 * 109.47350 * 155.05132 * 7 6 5 32 32 H 1.08997 * 109.47496 * 183.95622 * 10 9 8 33 33 H 1.09002 * 109.47021 * 303.95495 * 10 9 8 34 34 H 1.09002 * 109.47376 * 63.94987 * 10 9 8 35 35 H 1.09005 * 109.46927 * 44.30614 * 11 9 8 36 36 H 1.08997 * 109.47203 * 284.30632 * 11 9 8 37 37 H 0.97007 * 120.00210 * 179.97438 * 15 14 12 38 38 H 0.97001 * 120.00165 * 0.02562 * 21 20 8 39 39 H 0.96998 * 119.99905 * 180.02562 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7866 -0.3628 2.4692 6 7 2.4239 -1.2743 3.3206 7 6 2.3973 -1.2506 4.7852 8 6 3.0745 -2.1841 2.5454 9 7 3.8372 -3.2626 3.0000 10 6 3.2495 -4.5397 2.5740 11 6 5.2310 -3.1485 2.5502 12 6 6.0963 -4.0854 3.3530 13 1 5.6549 -4.7041 4.1204 14 6 7.4504 -4.1573 3.1037 15 7 7.9870 -3.4079 2.1656 16 14 8.5228 -5.3192 4.0984 17 1 7.6832 -6.0460 5.0842 18 1 9.1726 -6.2954 3.1872 19 1 9.5652 -4.5404 4.8139 20 6 2.8403 -1.8530 1.2430 21 7 3.3275 -2.5412 0.1081 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8901 28 1 1.6765 1.9564 0.8900 29 1 3.1750 -0.5807 5.1519 30 1 1.4237 -0.8977 5.1253 31 1 2.5734 -2.2559 5.1681 32 1 3.8226 -5.3634 2.9996 33 1 2.2175 -4.5981 2.9201 34 1 3.2721 -4.6052 1.4862 35 1 5.5758 -2.1242 2.6920 36 1 5.2945 -3.4103 1.4941 37 1 8.9397 -3.4582 1.9904 38 1 3.8838 -3.3279 0.2197 39 1 3.1054 -2.2265 -0.7822 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085021846.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:04 Heat of formation + Delta-G solvation = 78.831229 kcal Electronic energy + Delta-G solvation = -19301.025785 eV Core-core repulsion = 16473.289516 eV Total energy + Delta-G solvation = -2827.736269 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.78081 -36.56275 -35.38358 -33.32123 -32.49084 -31.10435 -28.01091 -27.19631 -26.99971 -25.59345 -24.63702 -22.18438 -21.83597 -19.38908 -18.63207 -16.78176 -16.24003 -15.64299 -15.19825 -14.70371 -14.47615 -14.31821 -13.93931 -13.46849 -13.38200 -13.21176 -12.78099 -12.20188 -12.16268 -12.06196 -11.92652 -11.52059 -11.19629 -11.06085 -11.00187 -10.83796 -10.73646 -10.60729 -10.17162 -10.04720 -10.00662 -9.33979 -8.50650 -8.42603 -7.56432 -6.51129 -6.07918 -4.10935 2.40094 2.96696 3.27292 3.35111 3.39132 3.42186 4.37023 4.55840 4.76655 4.99233 5.13876 5.27325 5.33895 5.34366 5.60315 5.69064 5.74057 5.80523 5.95712 5.97747 5.97902 6.01883 6.12884 6.13979 6.29579 6.39198 6.51991 6.59357 6.93352 7.06598 7.24138 7.50533 7.78205 7.98998 8.03532 8.21220 8.26031 8.50736 8.64534 8.96382 9.53459 11.01982 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.029978 B = 0.005725 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.807119 B = 4889.517683 C = 5180.002496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.005 4.005 3 C -0.141 4.141 4 C 0.040 3.960 5 N -0.284 5.284 6 N -0.359 5.359 7 C 0.119 3.881 8 C 0.202 3.798 9 N -0.489 5.489 10 C 0.050 3.950 11 C 0.209 3.791 12 C -0.511 4.511 13 H 0.065 0.935 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.033 3.967 21 N -0.876 5.876 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.022 0.978 35 H 0.027 0.973 36 H 0.003 0.997 37 H 0.261 0.739 38 H 0.397 0.603 39 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.313 4.070 -2.946 13.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 C -0.199 4.199 4 C -0.127 4.127 5 N -0.110 5.110 6 N -0.146 5.146 7 C -0.023 4.023 8 C -0.021 4.021 9 N -0.212 5.212 10 C -0.099 4.099 11 C 0.085 3.915 12 C -0.549 4.549 13 H 0.083 0.917 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.078 4.078 21 N -0.426 5.426 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.041 0.959 35 H 0.045 0.955 36 H 0.021 0.979 37 H 0.071 0.929 38 H 0.227 0.773 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -12.741 4.975 -1.500 13.760 hybrid contribution 1.422 -1.345 -1.023 2.209 sum -11.319 3.629 -2.523 12.151 Atomic orbital electron populations 1.21785 0.94422 1.01735 1.01725 1.19394 0.95477 0.95277 0.92444 1.21796 1.01315 0.95062 1.01678 1.21546 1.01294 0.96250 0.93632 1.77065 1.20544 1.13908 0.99466 1.47962 1.39789 1.21106 1.05766 1.21621 1.02138 1.04120 0.74455 1.18674 1.01208 0.95046 0.87177 1.58845 1.03754 0.98131 1.60477 1.22196 0.98113 0.91671 0.97878 1.19760 0.79455 0.97919 0.94376 1.21169 0.92039 1.22624 1.19112 0.91669 1.24981 0.97972 0.96099 0.95415 1.69978 1.12181 1.39637 1.31626 0.86426 0.80341 0.80584 0.79976 1.19617 1.21064 1.21014 1.17769 1.04528 0.97492 0.87987 1.41828 1.62445 1.34744 1.03611 0.92672 0.92866 0.92147 0.90464 0.92604 0.92671 0.92133 0.91557 0.90800 0.88920 0.90199 0.93562 0.95908 0.95453 0.97937 0.92887 0.77264 0.78573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.18 37.16 0.34 -1.29 16 2 C -0.01 -0.07 3.34 -91.77 -0.31 -0.38 16 3 C -0.14 -1.77 9.18 37.16 0.34 -1.43 16 4 C 0.04 0.70 5.72 -82.31 -0.47 0.23 16 5 N -0.28 -5.30 12.57 33.71 0.42 -4.88 16 6 N -0.36 -6.87 4.05 -66.82 -0.27 -7.15 16 7 C 0.12 1.82 11.45 59.85 0.68 2.50 16 8 C 0.20 4.20 5.59 -152.09 -0.85 3.35 16 9 N -0.49 -10.65 4.61 -181.98 -0.84 -11.49 16 10 C 0.05 0.95 9.12 60.06 0.55 1.50 16 11 C 0.21 5.37 4.31 -4.98 -0.02 5.35 16 12 C -0.51 -13.95 8.59 -34.44 -0.30 -14.24 16 13 H 0.07 1.75 7.49 -52.49 -0.39 1.36 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.16 13.29 55.43 0.74 -25.43 16 16 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C 0.03 0.63 6.78 -83.46 -0.57 0.07 16 21 N -0.88 -15.04 8.76 32.49 0.28 -14.75 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.08 0.96 7.03 -51.93 -0.37 0.59 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.09 1.40 8.02 -51.93 -0.42 0.99 16 32 H 0.08 1.56 7.26 -51.93 -0.38 1.18 16 33 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 34 H 0.02 0.42 6.05 -51.93 -0.31 0.11 16 35 H 0.03 0.80 7.98 -51.93 -0.41 0.38 16 36 H 0.00 0.08 6.21 -51.93 -0.32 -0.25 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 38 H 0.40 7.27 5.37 -40.82 -0.22 7.05 16 39 H 0.39 5.51 7.86 -40.82 -0.32 5.19 16 LS Contribution 317.68 15.07 4.79 4.79 Total: -1.00 -30.87 317.68 -6.67 -37.55 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -6.08 Total: 8.08 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -0.69 Total: -2.87 kcal Atomic # 7 Polarization: -64.03 SS G_CDS: 0.34 Total: -63.69 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.87 -6.67 -37.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085021846.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.379 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds