Wall clock time and date at job start Mon Mar 30 2020 04:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30834 * 125.95694 * 2 1 4 4 C 1.33241 * 109.82716 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.52704 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.46921 * 90.00023 * 5 4 3 7 7 C 1.46905 * 110.99855 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47065 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.46615 * 300.00100 * 8 7 6 10 10 C 1.52997 * 109.47194 * 60.00085 * 8 7 6 11 11 C 1.53001 * 109.47088 * 180.02562 * 8 7 6 12 12 C 1.50699 * 109.46870 * 180.02562 * 11 8 7 13 13 H 1.07993 * 120.00319 * 359.97438 * 12 11 8 14 14 C 1.37881 * 119.99347 * 179.97438 * 12 11 8 15 15 N 1.31513 * 120.00285 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99484 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46885 * 60.00066 * 16 14 12 18 18 H 1.48500 * 109.46718 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47350 * 299.99771 * 16 14 12 20 20 N 1.30718 * 108.94820 * 359.97438 * 4 3 2 21 21 N 1.34428 * 125.96273 * 180.02562 * 2 1 3 22 22 H 0.96998 * 126.82131 * 359.97438 * 21 2 1 23 23 H 1.09003 * 109.47179 * 89.97785 * 1 2 3 24 24 H 1.09004 * 109.47263 * 209.97548 * 1 2 3 25 25 H 1.09001 * 109.47979 * 329.97713 * 1 2 3 26 26 H 1.08999 * 109.46976 * 209.99632 * 5 4 3 27 27 H 1.08988 * 109.47287 * 330.00039 * 5 4 3 28 28 H 1.00905 * 110.99713 * 56.04818 * 6 5 4 29 29 H 1.09006 * 109.47112 * 300.00237 * 7 6 5 30 30 H 1.09001 * 109.46931 * 59.99786 * 7 6 5 31 31 H 1.08998 * 109.47479 * 60.00503 * 9 8 7 32 32 H 1.09006 * 109.46581 * 180.02562 * 9 8 7 33 33 H 1.09002 * 109.47236 * 299.99441 * 9 8 7 34 34 H 1.08992 * 109.47228 * 60.00084 * 10 8 7 35 35 H 1.09005 * 109.46814 * 180.02562 * 10 8 7 36 36 H 1.09000 * 109.46890 * 299.99493 * 10 8 7 37 37 H 1.09006 * 109.46746 * 299.99840 * 11 8 7 38 38 H 1.09001 * 109.47274 * 59.99375 * 11 8 7 39 39 H 0.96996 * 119.99885 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5551 0.6889 -0.0006 5 6 4.7371 1.6238 -0.0013 6 7 5.1218 1.9278 1.3835 7 6 6.2740 2.8383 1.4220 8 6 6.6447 3.1305 2.8774 9 6 5.4554 3.7825 3.5855 10 6 7.0047 1.8223 3.5844 11 6 7.8443 4.0793 2.9175 12 6 8.2098 4.3665 4.3510 13 1 7.6430 3.9176 5.1532 14 6 9.2680 5.2025 4.6383 15 7 9.9586 5.7487 3.6614 16 14 9.7207 5.5591 6.4152 17 1 10.0700 4.2893 7.1014 18 1 10.8858 6.4790 6.4541 19 1 8.5666 6.1921 7.1027 20 7 3.6194 -0.6167 -0.0004 21 7 2.2964 -1.0881 -0.0005 22 1 2.0093 -2.0146 -0.0006 23 1 -0.3634 0.0004 -1.0277 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3635 0.8897 0.5142 26 1 5.5739 1.1510 -0.5154 27 1 4.4697 2.5470 -0.5151 28 1 5.3123 1.0820 1.8998 29 1 7.1213 2.3736 0.9178 30 1 6.0176 3.7701 0.9179 31 1 4.6005 3.1068 3.5570 32 1 5.7197 3.9910 4.6223 33 1 5.1990 4.7145 3.0818 34 1 7.8519 1.3578 3.0799 35 1 7.2684 2.0304 4.6214 36 1 6.1498 1.1467 3.5559 37 1 8.6917 3.6151 2.4128 38 1 7.5875 5.0112 2.4138 39 1 10.7027 6.3371 3.8636 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085327104.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:07 Heat of formation + Delta-G solvation = 65.614626 kcal Electronic energy + Delta-G solvation = -18290.991977 eV Core-core repulsion = 15462.682594 eV Total energy + Delta-G solvation = -2828.309384 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.24636 -37.65073 -34.83600 -32.85554 -32.50129 -31.89190 -28.56479 -27.23857 -26.45662 -26.24899 -24.37712 -22.17710 -21.48193 -20.49889 -18.18716 -17.71027 -16.19195 -15.97793 -15.35293 -14.88001 -14.64493 -14.16049 -13.99285 -13.34989 -13.21904 -13.00459 -12.75341 -12.47160 -12.10993 -11.98560 -11.91734 -11.62716 -10.91842 -10.82007 -10.74404 -10.42887 -10.28271 -10.17724 -10.10717 -10.09011 -9.66457 -9.61305 -8.96529 -8.79569 -8.26747 -8.08327 -5.91580 -3.91451 1.41996 2.45298 2.73542 3.38316 3.42639 3.45151 3.80567 4.38253 4.52215 4.58862 4.77967 5.01678 5.07472 5.42067 5.44168 5.54890 5.61718 5.78081 5.84700 6.04422 6.11034 6.27642 6.31451 6.39078 6.57119 6.73819 6.84831 6.86078 6.89842 7.23607 7.26717 7.32617 7.41652 7.66055 7.75877 7.91381 8.00297 8.09007 8.53635 9.13706 9.71006 11.20132 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.050299 B = 0.003610 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.541437 B = 7755.332234 C = 7873.476711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.277 3.723 3 N -0.523 5.523 4 C 0.244 3.756 5 C 0.149 3.851 6 N -0.678 5.678 7 C 0.071 3.929 8 C -0.058 4.058 9 C -0.116 4.116 10 C -0.129 4.129 11 C 0.034 3.966 12 C -0.507 4.507 13 H 0.058 0.942 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.888 3.112 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.277 1.277 20 N -0.316 5.316 21 N -0.486 5.486 22 H 0.438 0.562 23 H 0.090 0.910 24 H 0.081 0.919 25 H 0.099 0.901 26 H 0.052 0.948 27 H 0.099 0.901 28 H 0.341 0.659 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.064 0.936 36 H 0.032 0.968 37 H 0.013 0.987 38 H 0.016 0.984 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.223 -13.071 -8.223 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.002 4.002 3 N -0.252 5.252 4 C -0.039 4.039 5 C 0.018 3.982 6 N -0.311 5.311 7 C -0.057 4.057 8 C -0.059 4.059 9 C -0.173 4.173 10 C -0.187 4.187 11 C -0.003 4.003 12 C -0.545 4.545 13 H 0.076 0.924 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.716 3.284 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.203 1.203 20 N -0.146 5.146 21 N -0.205 5.205 22 H 0.283 0.717 23 H 0.109 0.891 24 H 0.100 0.900 25 H 0.118 0.882 26 H 0.070 0.930 27 H 0.117 0.883 28 H 0.160 0.840 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.031 0.969 38 H 0.034 0.966 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.942 -12.448 -8.198 22.565 hybrid contribution 0.733 -1.049 0.679 1.448 sum -16.209 -13.497 -7.519 22.393 Atomic orbital electron populations 1.20376 0.83752 1.05033 1.04391 1.24456 0.96663 0.82927 0.96147 1.70400 1.01476 1.29151 1.24184 1.24236 0.93485 0.89642 0.96564 1.20161 0.89710 0.95826 0.92550 1.60541 1.40531 1.19613 1.10406 1.22156 0.89142 0.95567 0.98882 1.20636 0.97654 0.96325 0.91237 1.21600 0.96296 0.99037 1.00397 1.21772 0.98623 0.96273 1.01984 1.19120 0.90821 0.93293 0.97075 1.21209 1.13655 1.27236 0.92411 0.92354 1.25010 0.96570 0.96247 0.96744 1.69955 1.20573 1.32111 1.31166 0.86729 0.77870 0.78093 0.85722 1.20399 1.21469 1.20307 1.78019 0.96653 1.12671 1.27257 1.47975 1.04409 1.09913 1.58202 0.71736 0.89128 0.90013 0.88230 0.93031 0.88301 0.84007 0.95492 0.91083 0.93924 0.92753 0.94033 0.94024 0.91708 0.94937 0.96863 0.96563 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.51 36.00 0.38 -0.01 16 2 C 0.28 2.82 8.24 -155.70 -1.28 1.54 16 3 N -0.52 -7.37 11.19 -8.16 -0.09 -7.46 16 4 C 0.24 3.55 7.65 -156.85 -1.20 2.35 16 5 C 0.15 2.12 6.31 -4.97 -0.03 2.09 16 6 N -0.68 -10.82 5.70 -115.05 -0.66 -11.47 16 7 C 0.07 1.26 4.65 -3.82 -0.02 1.24 16 8 C -0.06 -1.19 0.60 -154.51 -0.09 -1.29 16 9 C -0.12 -2.34 8.06 37.16 0.30 -2.04 16 10 C -0.13 -2.50 7.89 37.16 0.29 -2.20 16 11 C 0.03 0.88 4.04 -27.88 -0.11 0.77 16 12 C -0.51 -14.06 7.65 -34.44 -0.26 -14.32 16 13 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 14 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 16 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 N -0.32 -4.36 12.80 32.42 0.41 -3.94 16 21 N -0.49 -4.80 7.45 32.62 0.24 -4.55 16 22 H 0.44 2.54 8.96 -182.33 -1.63 0.91 16 23 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 25 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.10 1.36 8.14 -51.94 -0.42 0.94 16 28 H 0.34 5.46 6.76 -39.29 -0.27 5.19 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.04 0.80 7.60 -51.93 -0.39 0.40 16 32 H 0.05 1.16 6.62 -51.93 -0.34 0.82 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 1.35 6.62 -51.93 -0.34 1.00 16 36 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 319.02 15.07 4.81 4.81 Total: -1.00 -33.27 319.02 -9.10 -42.37 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.41 Total: 0.21 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -2.13 Total: -10.40 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.65 Total: -53.83 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.27 -9.10 -42.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085327104.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.986 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds