Wall clock time and date at job start Mon Mar 30 2020 04:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46798 * 179.97438 * 9 7 2 11 11 C 1.46902 * 110.99709 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47434 * 34.99855 * 11 10 9 13 13 C 1.53002 * 109.46708 * 274.99679 * 11 10 9 14 14 C 1.53003 * 109.47371 * 300.00067 * 13 11 10 15 15 C 1.53005 * 109.47198 * 300.00526 * 14 13 11 16 16 C 1.52993 * 109.47357 * 59.99619 * 15 14 13 17 17 C 1.53001 * 109.46856 * 155.00160 * 11 10 9 18 18 H 1.08998 * 109.47225 * 179.97438 * 17 11 10 19 19 C 1.53002 * 109.47069 * 299.99297 * 17 11 10 20 20 H 1.08996 * 110.36939 * 305.70209 * 19 17 11 21 21 C 1.54381 * 110.41051 * 183.34959 * 19 17 11 22 22 C 1.54264 * 105.06288 * 217.36968 * 21 19 17 23 23 C 1.54388 * 105.05692 * 0.02562 * 22 21 19 24 24 N 1.48563 * 110.40975 * 68.05558 * 19 17 11 25 25 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 27 27 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 28 28 H 1.00894 * 111.00173 * 56.04517 * 10 9 7 29 29 H 1.08992 * 109.47392 * 60.00327 * 13 11 10 30 30 H 1.08998 * 109.46735 * 180.02562 * 13 11 10 31 31 H 1.08998 * 109.46558 * 60.00026 * 14 13 11 32 32 H 1.08996 * 109.47250 * 180.02562 * 14 13 11 33 33 H 1.08997 * 109.47078 * 179.97438 * 15 14 13 34 34 H 1.09007 * 109.46701 * 299.99376 * 15 14 13 35 35 H 1.08998 * 109.47384 * 59.99897 * 16 15 14 36 36 H 1.09001 * 109.47135 * 180.02562 * 16 15 14 37 37 H 1.08990 * 110.32648 * 336.27140 * 21 19 17 38 38 H 1.09005 * 110.32085 * 98.47568 * 21 19 17 39 39 H 1.08990 * 110.32253 * 118.89878 * 22 21 19 40 40 H 1.08997 * 110.32299 * 241.11271 * 22 21 19 41 41 H 1.08997 * 110.40885 * 142.63225 * 23 22 21 42 42 H 1.09005 * 110.40770 * 265.07247 * 23 22 21 43 43 H 1.00905 * 110.99632 * 277.82148 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5053 -4.9070 -0.0001 12 1 0.5923 -4.8250 -0.5898 13 6 1.1513 -5.2958 1.4368 14 6 2.4329 -5.4110 2.2645 15 6 3.3393 -6.4824 1.6548 16 6 3.6933 -6.0937 0.2181 17 6 2.4117 -5.9784 -0.6097 18 1 1.8923 -6.9367 -0.6098 19 6 2.7657 -5.5897 -2.0465 20 1 1.8598 -5.4053 -2.6239 21 6 3.6116 -6.6970 -2.7110 22 6 4.6375 -5.9473 -3.5858 23 6 4.3255 -4.4500 -3.3757 24 7 3.6407 -4.3891 -2.0578 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 0.8902 27 1 0.6248 -2.5571 -0.8897 28 1 2.8405 -3.5487 0.7818 29 1 0.5057 -4.5326 1.8711 30 1 0.6320 -6.2541 1.4364 31 1 2.9525 -4.4529 2.2649 32 1 2.1807 -5.6884 3.2880 33 1 4.2524 -6.5642 2.2442 34 1 2.8196 -7.4406 1.6545 35 1 4.2129 -5.1355 0.2184 36 1 4.3386 -6.8572 -0.2164 37 1 4.1224 -7.2899 -1.9524 38 1 2.9809 -7.3352 -3.3300 39 1 5.6519 -6.1722 -3.2564 40 1 4.5103 -6.2174 -4.6340 41 1 5.2476 -3.8691 -3.3533 42 1 3.6645 -4.0855 -4.1621 43 1 3.0963 -3.5441 -1.9696 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086498229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:24 Heat of formation + Delta-G solvation = -14.709865 kcal Electronic energy + Delta-G solvation = -20143.127244 eV Core-core repulsion = 17414.875072 eV Total energy + Delta-G solvation = -2728.252172 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.52888 -37.08051 -33.97320 -32.12180 -31.33441 -29.63398 -29.13890 -26.98559 -25.57764 -22.62209 -21.91959 -21.67574 -20.54960 -19.39172 -18.16871 -16.46559 -16.05357 -15.58347 -14.77288 -14.57665 -14.22402 -13.79227 -13.72462 -13.07171 -12.92338 -12.61384 -12.17478 -11.98571 -11.74612 -11.59282 -11.43271 -11.40820 -11.19551 -10.91270 -10.84804 -10.75652 -10.59616 -10.45141 -10.27876 -9.92577 -9.84692 -9.67652 -9.45951 -9.04798 -8.45044 -7.76023 -7.07669 -6.00641 -4.01812 3.32052 3.39830 3.45080 4.45543 4.78497 4.93384 5.03176 5.17065 5.25300 5.26949 5.35480 5.39218 5.54566 5.62593 5.69754 5.75970 5.85770 5.94846 5.97342 5.98307 6.00381 6.09920 6.15570 6.16655 6.20473 6.33546 6.38357 6.40263 6.53563 6.60087 6.63121 6.69478 6.84872 7.07504 7.33719 7.49796 7.52261 7.85234 8.19169 8.30384 8.51392 8.73098 9.10249 9.63602 11.10326 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018858 B = 0.007244 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.386418 B = 3864.317927 C = 4804.740806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.191 3.809 10 N -0.668 5.668 11 C 0.089 3.911 12 H 0.063 0.937 13 C -0.146 4.146 14 C -0.118 4.118 15 C -0.119 4.119 16 C -0.102 4.102 17 C -0.058 4.058 18 H 0.057 0.943 19 C 0.086 3.914 20 H 0.035 0.965 21 C -0.125 4.125 22 C -0.122 4.122 23 C 0.029 3.971 24 N -0.638 5.638 25 H 0.259 0.741 26 H -0.016 1.016 27 H 0.022 0.978 28 H 0.334 0.666 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.027 0.973 43 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.047 -13.651 -1.975 15.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.064 3.936 10 N -0.300 5.300 11 C -0.022 4.022 12 H 0.082 0.918 13 C -0.186 4.186 14 C -0.156 4.156 15 C -0.156 4.156 16 C -0.139 4.139 17 C -0.078 4.078 18 H 0.075 0.925 19 C -0.025 4.025 20 H 0.053 0.947 21 C -0.164 4.164 22 C -0.160 4.160 23 C -0.101 4.101 24 N -0.274 5.274 25 H 0.069 0.931 26 H 0.002 0.998 27 H 0.040 0.960 28 H 0.154 0.846 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.520 -13.719 -2.230 15.352 hybrid contribution -0.881 1.173 0.230 1.485 sum 5.639 -12.546 -2.000 13.900 Atomic orbital electron populations 1.69977 1.06074 1.26499 1.51310 1.24985 0.94797 0.99282 0.95533 0.86488 0.80179 0.83636 0.77378 1.19624 1.21189 1.21249 1.21258 0.93587 0.90216 1.49700 0.91796 1.19581 0.90797 0.87743 0.95431 1.60684 1.19845 1.00394 1.49068 1.21507 0.95752 0.91417 0.93549 0.91842 1.22151 0.97463 1.00960 0.97976 1.21493 0.96463 0.99545 0.98061 1.21571 0.98698 0.98053 0.97304 1.21434 0.97031 1.02707 0.92767 1.21071 0.96217 0.96689 0.93822 0.92496 1.22191 0.94025 0.91353 0.94922 0.94722 1.22442 0.97483 0.97813 0.98615 1.22248 0.99374 0.95669 0.98684 1.22906 0.99152 0.95639 0.92390 1.63699 1.30177 1.06323 1.27198 0.93123 0.99786 0.96003 0.84643 0.92022 0.92840 0.91465 0.92971 0.92829 0.93126 0.89288 0.93237 0.91098 0.92608 0.91789 0.92551 0.91061 0.95469 0.80727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.51 -13.94 9.32 -34.44 -0.32 -14.26 16 8 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 9 C 0.19 4.79 5.24 -4.98 -0.03 4.76 16 10 N -0.67 -13.21 2.87 -107.99 -0.31 -13.52 16 11 C 0.09 1.52 2.30 -67.71 -0.16 1.36 16 12 H 0.06 1.18 7.80 -51.93 -0.40 0.77 16 13 C -0.15 -2.31 5.52 -26.73 -0.15 -2.46 16 14 C -0.12 -1.70 5.67 -26.73 -0.15 -1.85 16 15 C -0.12 -1.54 5.92 -26.73 -0.16 -1.69 16 16 C -0.10 -1.42 4.53 -26.73 -0.12 -1.55 16 17 C -0.06 -0.86 1.96 -90.62 -0.18 -1.03 16 18 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 19 C 0.09 1.28 2.84 -66.07 -0.19 1.10 16 20 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 21 C -0.13 -1.58 6.39 -25.35 -0.16 -1.75 16 22 C -0.12 -1.50 7.00 -25.34 -0.18 -1.67 16 23 C 0.03 0.42 7.47 -2.13 -0.02 0.41 16 24 N -0.64 -10.50 5.43 -102.68 -0.56 -11.06 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 26 H -0.02 -0.43 7.44 -51.93 -0.39 -0.81 16 27 H 0.02 0.60 8.05 -51.93 -0.42 0.18 16 28 H 0.33 6.67 5.56 -39.30 -0.22 6.45 16 29 H 0.06 1.10 7.45 -51.93 -0.39 0.71 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.07 6.26 -51.93 -0.32 0.74 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 1.44 6.52 -51.93 -0.34 1.10 16 36 H 0.05 0.65 6.29 -51.93 -0.33 0.32 16 37 H 0.07 0.87 5.99 -51.93 -0.31 0.56 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.37 7.14 7.06 -39.29 -0.28 6.86 16 LS Contribution 316.15 15.07 4.76 4.76 Total: -1.00 -27.46 316.15 -9.88 -37.33 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -7.59 Total: 8.98 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -1.90 Total: -17.18 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.13 Total: -50.49 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.46 -9.88 -37.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086498229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.623 kcal (2) G-P(sol) polarization free energy of solvation -27.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds