Wall clock time and date at job start Mon Mar 30 2020 04:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46798 * 179.97438 * 9 7 2 11 11 C 1.46902 * 110.99709 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47434 * 34.99855 * 11 10 9 13 13 C 1.53002 * 109.46708 * 274.99679 * 11 10 9 14 14 C 1.53003 * 109.47371 * 300.00067 * 13 11 10 15 15 C 1.53005 * 109.47198 * 300.00526 * 14 13 11 16 16 C 1.52993 * 109.47357 * 59.99619 * 15 14 13 17 17 C 1.53001 * 109.46856 * 155.00160 * 11 10 9 18 18 H 1.08998 * 109.47225 * 179.97438 * 17 11 10 19 19 C 1.53002 * 109.47069 * 299.99297 * 17 11 10 20 20 H 1.08996 * 110.36939 * 305.70209 * 19 17 11 21 21 C 1.54381 * 110.41051 * 183.34959 * 19 17 11 22 22 C 1.54264 * 105.06288 * 217.36968 * 21 19 17 23 23 C 1.54388 * 105.05692 * 0.02562 * 22 21 19 24 24 N 1.48563 * 110.40975 * 68.05558 * 19 17 11 25 25 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 27 27 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 28 28 H 1.00894 * 111.00173 * 56.04517 * 10 9 7 29 29 H 1.08992 * 109.47392 * 60.00327 * 13 11 10 30 30 H 1.08998 * 109.46735 * 180.02562 * 13 11 10 31 31 H 1.08998 * 109.46558 * 60.00026 * 14 13 11 32 32 H 1.08996 * 109.47250 * 180.02562 * 14 13 11 33 33 H 1.08997 * 109.47078 * 179.97438 * 15 14 13 34 34 H 1.09007 * 109.46701 * 299.99376 * 15 14 13 35 35 H 1.08998 * 109.47384 * 59.99897 * 16 15 14 36 36 H 1.09001 * 109.47135 * 180.02562 * 16 15 14 37 37 H 1.08990 * 110.32648 * 336.27140 * 21 19 17 38 38 H 1.09005 * 110.32085 * 98.47568 * 21 19 17 39 39 H 1.08990 * 110.32253 * 118.89878 * 22 21 19 40 40 H 1.08997 * 110.32299 * 241.11271 * 22 21 19 41 41 H 1.08997 * 110.40885 * 142.63225 * 23 22 21 42 42 H 1.09005 * 110.40770 * 265.07247 * 23 22 21 43 43 H 1.00905 * 110.99632 * 277.82148 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5053 -4.9070 -0.0001 12 1 0.5923 -4.8250 -0.5898 13 6 1.1513 -5.2958 1.4368 14 6 2.4329 -5.4110 2.2645 15 6 3.3393 -6.4824 1.6548 16 6 3.6933 -6.0937 0.2181 17 6 2.4117 -5.9784 -0.6097 18 1 1.8923 -6.9367 -0.6098 19 6 2.7657 -5.5897 -2.0465 20 1 1.8598 -5.4053 -2.6239 21 6 3.6116 -6.6970 -2.7110 22 6 4.6375 -5.9473 -3.5858 23 6 4.3255 -4.4500 -3.3757 24 7 3.6407 -4.3891 -2.0578 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 0.8902 27 1 0.6248 -2.5571 -0.8897 28 1 2.8405 -3.5487 0.7818 29 1 0.5057 -4.5326 1.8711 30 1 0.6320 -6.2541 1.4364 31 1 2.9525 -4.4529 2.2649 32 1 2.1807 -5.6884 3.2880 33 1 4.2524 -6.5642 2.2442 34 1 2.8196 -7.4406 1.6545 35 1 4.2129 -5.1355 0.2184 36 1 4.3386 -6.8572 -0.2164 37 1 4.1224 -7.2899 -1.9524 38 1 2.9809 -7.3352 -3.3300 39 1 5.6519 -6.1722 -3.2564 40 1 4.5103 -6.2174 -4.6340 41 1 5.2476 -3.8691 -3.3533 42 1 3.6645 -4.0855 -4.1621 43 1 3.0963 -3.5441 -1.9696 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086498229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:23 Heat of formation + Delta-G solvation = -30.488697 kcal Electronic energy + Delta-G solvation = -20143.811465 eV Core-core repulsion = 17414.875072 eV Total energy + Delta-G solvation = -2728.936393 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.80478 -38.30472 -35.77969 -33.99832 -32.53132 -30.79979 -30.61390 -28.39408 -27.32596 -23.95370 -23.69886 -22.97860 -21.68903 -20.57574 -19.53400 -18.44375 -17.25664 -17.03348 -16.51143 -15.99583 -15.64607 -15.22252 -14.95594 -14.44407 -14.33827 -14.11291 -13.75114 -13.43443 -13.28861 -12.93814 -12.88242 -12.74990 -12.60660 -12.51679 -12.36952 -12.01522 -11.94447 -11.83733 -11.66536 -11.41075 -11.22787 -11.02710 -10.88954 -10.64410 -10.61254 -9.04749 -8.78956 -8.18933 -6.28278 1.40393 1.41314 1.54999 2.41438 3.14821 3.58204 3.73003 3.76131 4.00222 4.02542 4.10745 4.21764 4.35546 4.40652 4.51727 4.58242 4.64490 4.73384 4.78921 4.80913 4.88529 4.93303 4.99953 5.04098 5.11247 5.12498 5.21593 5.25232 5.32007 5.36585 5.40832 5.44934 5.45584 5.51543 5.66391 5.69857 5.90358 6.10848 6.30435 6.59791 6.82994 6.86712 7.03341 7.43065 8.92560 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018858 B = 0.007244 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.386418 B = 3864.317927 C = 4804.740806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.521 4.521 8 H 0.065 0.935 9 C 0.213 3.787 10 N -0.653 5.653 11 C 0.086 3.914 12 H 0.040 0.960 13 C -0.142 4.142 14 C -0.115 4.115 15 C -0.111 4.111 16 C -0.095 4.095 17 C -0.051 4.051 18 H 0.078 0.922 19 C 0.080 3.920 20 H 0.014 0.986 21 C -0.118 4.118 22 C -0.115 4.115 23 C 0.024 3.976 24 N -0.648 5.648 25 H 0.262 0.738 26 H -0.047 1.047 27 H -0.009 1.009 28 H 0.335 0.665 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.019 0.981 43 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.906 -15.305 -1.929 17.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.559 4.559 8 H 0.083 0.917 9 C 0.084 3.916 10 N -0.285 5.285 11 C -0.025 4.025 12 H 0.058 0.942 13 C -0.181 4.181 14 C -0.153 4.153 15 C -0.149 4.149 16 C -0.133 4.133 17 C -0.070 4.070 18 H 0.096 0.904 19 C -0.030 4.030 20 H 0.032 0.968 21 C -0.156 4.156 22 C -0.153 4.153 23 C -0.106 4.106 24 N -0.281 5.281 25 H 0.071 0.929 26 H -0.029 1.029 27 H 0.009 0.991 28 H 0.155 0.845 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.038 0.962 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.402 -15.410 -2.187 17.687 hybrid contribution -1.503 1.659 0.199 2.247 sum 6.899 -13.751 -1.987 15.512 Atomic orbital electron populations 1.70109 1.07778 1.27566 1.52297 1.25892 0.95635 1.03151 0.95033 0.85367 0.79112 0.78860 0.77448 1.18618 1.20749 1.20694 1.21575 0.93744 0.91308 1.49305 0.91686 1.19153 0.90682 0.89338 0.92379 1.60614 1.18606 1.00246 1.48992 1.21603 0.95426 0.90887 0.94582 0.94193 1.22086 0.98165 1.01011 0.96852 1.21476 0.95642 0.99375 0.98812 1.21531 0.99075 0.97917 0.96361 1.21356 0.96313 1.02047 0.93568 1.21032 0.96254 0.96155 0.93553 0.90429 1.22276 0.93654 0.91897 0.95194 0.96759 1.22413 0.97281 0.96974 0.98942 1.22230 0.99789 0.93508 0.99746 1.23001 0.98734 0.97683 0.91210 1.63713 1.30045 1.05792 1.28574 0.92942 1.02923 0.99130 0.84507 0.95026 0.90580 0.93512 0.91436 0.91307 0.91287 0.91704 0.91435 0.89968 0.91109 0.90763 0.90912 0.91005 0.96226 0.83177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.20 13.29 21.45 0.28 -56.92 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.52 -29.43 9.32 25.60 0.24 -29.19 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 9 C 0.21 11.26 5.24 85.55 0.45 11.71 16 10 N -0.65 -26.92 2.87 -495.58 -1.42 -28.34 16 11 C 0.09 2.99 2.30 44.92 0.10 3.09 16 12 H 0.04 1.57 7.80 -2.39 -0.02 1.55 16 13 C -0.14 -4.48 5.52 30.60 0.17 -4.31 16 14 C -0.12 -3.17 5.67 30.60 0.17 -3.00 16 15 C -0.11 -2.53 5.92 30.59 0.18 -2.35 16 16 C -0.10 -2.43 4.53 30.59 0.14 -2.29 16 17 C -0.05 -1.41 1.96 -10.79 -0.02 -1.43 16 18 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 19 C 0.08 2.34 2.84 45.06 0.13 2.47 16 20 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 21 C -0.12 -2.65 6.39 31.49 0.20 -2.45 16 22 C -0.11 -2.53 7.00 31.49 0.22 -2.31 16 23 C 0.02 0.67 7.47 86.44 0.65 1.31 16 24 N -0.65 -21.39 5.43 -478.76 -2.60 -23.99 16 25 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 26 H -0.05 -2.73 7.44 -2.39 -0.02 -2.75 16 27 H -0.01 -0.55 8.05 -2.39 -0.02 -0.57 16 28 H 0.33 13.81 5.56 -89.70 -0.50 13.31 16 29 H 0.03 1.17 7.45 -2.39 -0.02 1.15 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.05 1.47 6.26 -2.39 -0.01 1.46 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.06 2.01 6.52 -2.39 -0.02 1.99 16 36 H 0.07 1.52 6.29 -2.39 -0.02 1.50 16 37 H 0.08 1.68 5.99 -2.39 -0.01 1.67 16 38 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 43 H 0.35 13.97 7.06 -89.69 -0.63 13.34 16 Total: -1.00 -60.98 316.15 1.23 -59.75 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: -0.15 Total: 30.83 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 3.09 Total: -28.26 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -3.74 Total: -109.25 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -60.98 1.23 -59.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086498229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.266 kcal (2) G-P(sol) polarization free energy of solvation -60.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds