Wall clock time and date at job start Mon Mar 30 2020 04:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99804 * 2 1 4 4 H 1.48495 * 109.47208 * 270.00087 * 3 2 1 5 5 H 1.48496 * 109.47175 * 30.00480 * 3 2 1 6 6 H 1.48500 * 109.47087 * 150.00425 * 3 2 1 7 7 C 1.37880 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99522 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00252 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47094 * 179.97438 * 9 7 2 11 11 N 1.46892 * 109.47279 * 184.62868 * 10 9 7 12 12 C 1.46902 * 111.00320 * 195.64720 * 11 10 9 13 13 C 1.53005 * 109.47245 * 75.52088 * 12 11 10 14 14 C 1.53110 * 109.52187 * 65.93688 * 13 12 11 15 15 C 1.53181 * 109.20753 * 177.56221 * 14 13 12 16 16 N 1.46845 * 109.55335 * 300.86079 * 15 14 13 17 17 C 1.46845 * 111.19792 * 61.74245 * 16 15 14 18 18 C 1.53037 * 109.52711 * 298.25253 * 17 16 15 19 19 C 1.46894 * 111.00167 * 71.68844 * 11 10 9 20 20 C 1.52998 * 117.50367 * 249.99762 * 19 11 10 21 21 C 1.52998 * 117.49937 * 181.33580 * 19 11 10 22 22 H 0.97002 * 120.00815 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47044 * 59.99836 * 9 7 2 24 24 H 1.08990 * 109.47123 * 299.99853 * 9 7 2 25 25 H 1.09001 * 109.46801 * 64.62764 * 10 9 7 26 26 H 1.09001 * 109.47161 * 304.62973 * 10 9 7 27 27 H 1.08998 * 109.46784 * 315.52236 * 12 11 10 28 28 H 1.09003 * 109.47307 * 195.52216 * 12 11 10 29 29 H 1.09001 * 109.52269 * 305.81259 * 13 12 11 30 30 H 1.08999 * 109.50709 * 297.56575 * 14 13 12 31 31 H 1.09006 * 109.50541 * 57.68452 * 14 13 12 32 32 H 1.09001 * 109.44209 * 180.83861 * 15 14 13 33 33 H 1.08996 * 109.43249 * 60.87985 * 15 14 13 34 34 H 1.00901 * 110.99971 * 185.83699 * 16 15 14 35 35 H 1.09005 * 109.46415 * 178.23494 * 17 16 15 36 36 H 1.09001 * 109.45698 * 58.26921 * 17 16 15 37 37 H 1.08991 * 109.50364 * 299.24534 * 18 17 16 38 38 H 1.08995 * 109.53993 * 179.13246 * 18 17 16 39 39 H 1.09000 * 115.55067 * 35.66837 * 19 11 10 40 40 H 1.09002 * 117.49373 * 0.02562 * 20 19 11 41 41 H 1.08998 * 117.49966 * 145.01546 * 20 19 11 42 42 H 1.09003 * 117.50326 * 214.97990 * 21 19 11 43 43 H 1.09002 * 117.50120 * 359.97438 * 21 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 7 1.5143 -4.9312 -0.1156 12 6 2.3722 -6.0670 0.2475 13 6 2.5348 -6.1178 1.7680 14 6 1.1843 -6.4336 2.4167 15 6 1.3671 -6.5428 3.9336 16 7 2.3371 -7.6028 4.2367 17 6 3.6538 -7.2976 3.6626 18 6 3.5401 -7.2117 2.1389 19 6 0.9594 -5.1009 -1.4651 20 6 -0.5597 -5.0068 -1.6214 21 6 0.1395 -6.3634 -1.7382 22 1 -0.4851 0.8400 0.0004 23 1 0.6247 -2.5563 -0.8920 24 1 0.6241 -2.5576 0.8879 25 1 2.8160 -3.6529 0.9258 26 1 2.9252 -3.5580 -0.8483 27 1 3.3502 -5.9472 -0.2186 28 1 1.9150 -6.9935 -0.1002 29 1 2.8954 -5.1543 2.1282 30 1 0.4765 -5.6361 2.1905 31 1 0.8054 -7.3785 2.0271 32 1 0.4105 -6.7823 4.3981 33 1 1.7329 -5.5933 4.3241 34 1 2.4036 -7.7585 5.2314 35 1 4.3582 -8.0852 3.9304 36 1 4.0087 -6.3445 4.0547 37 1 3.1983 -8.1687 1.7450 38 1 4.5141 -6.9699 1.7137 39 1 1.5738 -4.7142 -2.2781 40 1 -1.1473 -4.8185 -0.7228 41 1 -0.9446 -4.5584 -2.5373 42 1 0.2142 -6.8072 -2.7310 43 1 0.0122 -7.0684 -0.9166 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086703874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:19 Heat of formation + Delta-G solvation = 11.585891 kcal Electronic energy + Delta-G solvation = -19362.442620 eV Core-core repulsion = 16635.330718 eV Total energy + Delta-G solvation = -2727.111902 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.04163 -37.59345 -34.44559 -33.23313 -31.80571 -30.64653 -29.18114 -25.83658 -24.11769 -22.84648 -22.10137 -21.42948 -21.05255 -19.59778 -19.12295 -16.58761 -16.27540 -15.71756 -14.95092 -14.55006 -14.47107 -14.27548 -14.05012 -13.75307 -12.93228 -12.73933 -12.53250 -12.42086 -12.15905 -11.90579 -11.55421 -11.10512 -11.08360 -11.05541 -10.95974 -10.54300 -10.47309 -10.33025 -10.15576 -10.00220 -9.69536 -9.58562 -9.28311 -9.05725 -8.46911 -8.29213 -7.63366 -5.95926 -3.98012 3.32882 3.39190 3.42222 4.21432 4.23385 4.30550 4.51405 4.94410 5.00376 5.05284 5.33290 5.36268 5.40145 5.41640 5.50212 5.54630 5.64189 5.70060 5.75436 5.84614 5.91541 5.93580 6.00349 6.11790 6.13621 6.20547 6.29843 6.33902 6.42951 6.52965 6.56725 6.64535 6.68969 7.05349 7.07126 7.34782 7.60041 7.69205 7.83563 7.99469 8.14986 8.48857 9.09961 9.65192 11.15276 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018232 B = 0.005731 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.411024 B = 4884.139828 C = 5775.290903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.051 0.949 9 C 0.033 3.967 10 C 0.066 3.934 11 N -0.509 5.509 12 C 0.062 3.938 13 C -0.084 4.084 14 C -0.099 4.099 15 C 0.055 3.945 16 N -0.692 5.692 17 C 0.059 3.941 18 C -0.111 4.111 19 C 0.022 3.978 20 C -0.154 4.154 21 C -0.187 4.187 22 H 0.259 0.741 23 H 0.021 0.979 24 H 0.020 0.980 25 H 0.058 0.942 26 H 0.020 0.980 27 H 0.026 0.974 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.030 0.970 34 H 0.337 0.663 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.714 -15.360 3.533 16.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.061 4.061 11 N -0.233 5.233 12 C -0.065 4.065 13 C -0.103 4.103 14 C -0.137 4.137 15 C -0.074 4.074 16 N -0.323 5.323 17 C -0.070 4.070 18 C -0.150 4.150 19 C -0.087 4.087 20 C -0.192 4.192 21 C -0.225 4.225 22 H 0.069 0.931 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.077 0.923 26 H 0.038 0.962 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.154 0.846 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.988 -15.610 3.335 16.239 hybrid contribution 1.488 1.763 0.029 2.308 sum 4.476 -13.846 3.364 14.936 Atomic orbital electron populations 1.69973 1.05956 1.26417 1.50791 1.24969 0.94789 0.99007 0.95427 0.86648 0.79864 0.83753 0.78041 1.20742 1.21229 1.19984 1.21227 0.92873 0.91271 1.50684 0.93040 1.19006 0.93869 0.89700 0.97887 1.22383 0.96400 0.88504 0.98779 1.61864 1.36179 1.02535 1.22690 1.22084 0.95114 0.94514 0.94833 1.21188 0.95601 0.98396 0.95076 1.21508 0.97405 1.02052 0.92745 1.22022 0.95475 0.92177 0.97771 1.60327 1.08627 1.45638 1.17669 1.21884 0.90425 0.99075 0.95632 1.21607 0.99013 0.99571 0.94773 1.22298 0.94078 1.01059 0.91277 1.22968 0.95175 0.98084 1.02994 1.23061 1.06109 0.91555 1.01781 0.93092 0.96107 0.96143 0.92319 0.96217 0.95538 0.91391 0.91151 0.90006 0.92096 0.91141 0.95186 0.84619 0.91268 0.95315 0.91419 0.91991 0.89992 0.88191 0.89310 0.89544 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 9 C 0.03 0.86 5.11 -27.89 -0.14 0.72 16 10 C 0.07 1.40 4.73 -3.83 -0.02 1.39 16 11 N -0.51 -9.14 4.08 -226.66 -0.93 -10.07 16 12 C 0.06 0.94 4.32 -3.82 -0.02 0.92 16 13 C -0.08 -1.18 2.30 -90.50 -0.21 -1.39 16 14 C -0.10 -1.38 5.26 -26.58 -0.14 -1.52 16 15 C 0.05 0.68 6.55 -3.76 -0.02 0.66 16 16 N -0.69 -7.77 6.85 -113.74 -0.78 -8.55 16 17 C 0.06 0.65 6.55 -3.84 -0.03 0.63 16 18 C -0.11 -1.32 5.38 -26.65 -0.14 -1.46 16 19 C 0.02 0.37 4.42 -67.72 -0.30 0.07 16 20 C -0.15 -2.53 10.20 -26.69 -0.27 -2.80 16 21 C -0.19 -2.61 9.52 -26.69 -0.25 -2.87 16 22 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.02 0.58 7.23 -51.93 -0.38 0.20 16 24 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 1.24 6.46 -51.93 -0.34 0.90 16 26 H 0.02 0.43 7.94 -51.93 -0.41 0.01 16 27 H 0.03 0.40 8.00 -51.93 -0.42 -0.01 16 28 H 0.07 0.95 6.47 -51.93 -0.34 0.62 16 29 H 0.07 1.14 6.62 -51.93 -0.34 0.79 16 30 H 0.08 1.32 7.86 -51.93 -0.41 0.91 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.34 3.12 8.90 -39.29 -0.35 2.77 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 1.46 7.97 -51.93 -0.41 1.04 16 40 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 41 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.09 1.26 7.43 -51.93 -0.39 0.88 16 LS Contribution 334.47 15.07 5.04 5.04 Total: -1.00 -29.75 334.47 -10.87 -40.62 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.97 Total: 1.67 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -1.95 Total: -19.26 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: -0.97 Total: -44.89 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.75 -10.87 -40.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086703874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.210 kcal (2) G-P(sol) polarization free energy of solvation -29.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds