Wall clock time and date at job start Mon Mar 30 2020 04:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99804 * 2 1 4 4 H 1.48495 * 109.47208 * 270.00087 * 3 2 1 5 5 H 1.48496 * 109.47175 * 30.00480 * 3 2 1 6 6 H 1.48500 * 109.47087 * 150.00425 * 3 2 1 7 7 C 1.37880 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99522 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00252 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47094 * 179.97438 * 9 7 2 11 11 N 1.46892 * 109.47279 * 184.62868 * 10 9 7 12 12 C 1.46902 * 111.00320 * 195.64720 * 11 10 9 13 13 C 1.53005 * 109.47245 * 75.52088 * 12 11 10 14 14 C 1.53110 * 109.52187 * 65.93688 * 13 12 11 15 15 C 1.53181 * 109.20753 * 177.56221 * 14 13 12 16 16 N 1.46845 * 109.55335 * 300.86079 * 15 14 13 17 17 C 1.46845 * 111.19792 * 61.74245 * 16 15 14 18 18 C 1.53037 * 109.52711 * 298.25253 * 17 16 15 19 19 C 1.46894 * 111.00167 * 71.68844 * 11 10 9 20 20 C 1.52998 * 117.50367 * 249.99762 * 19 11 10 21 21 C 1.52998 * 117.49937 * 181.33580 * 19 11 10 22 22 H 0.97002 * 120.00815 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47044 * 59.99836 * 9 7 2 24 24 H 1.08990 * 109.47123 * 299.99853 * 9 7 2 25 25 H 1.09001 * 109.46801 * 64.62764 * 10 9 7 26 26 H 1.09001 * 109.47161 * 304.62973 * 10 9 7 27 27 H 1.08998 * 109.46784 * 315.52236 * 12 11 10 28 28 H 1.09003 * 109.47307 * 195.52216 * 12 11 10 29 29 H 1.09001 * 109.52269 * 305.81259 * 13 12 11 30 30 H 1.08999 * 109.50709 * 297.56575 * 14 13 12 31 31 H 1.09006 * 109.50541 * 57.68452 * 14 13 12 32 32 H 1.09001 * 109.44209 * 180.83861 * 15 14 13 33 33 H 1.08996 * 109.43249 * 60.87985 * 15 14 13 34 34 H 1.00901 * 110.99971 * 185.83699 * 16 15 14 35 35 H 1.09005 * 109.46415 * 178.23494 * 17 16 15 36 36 H 1.09001 * 109.45698 * 58.26921 * 17 16 15 37 37 H 1.08991 * 109.50364 * 299.24534 * 18 17 16 38 38 H 1.08995 * 109.53993 * 179.13246 * 18 17 16 39 39 H 1.09000 * 115.55067 * 35.66837 * 19 11 10 40 40 H 1.09002 * 117.49373 * 0.02562 * 20 19 11 41 41 H 1.08998 * 117.49966 * 145.01546 * 20 19 11 42 42 H 1.09003 * 117.50326 * 214.97990 * 21 19 11 43 43 H 1.09002 * 117.50120 * 359.97438 * 21 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 7 1.5143 -4.9312 -0.1156 12 6 2.3722 -6.0670 0.2475 13 6 2.5348 -6.1178 1.7680 14 6 1.1843 -6.4336 2.4167 15 6 1.3671 -6.5428 3.9336 16 7 2.3371 -7.6028 4.2367 17 6 3.6538 -7.2976 3.6626 18 6 3.5401 -7.2117 2.1389 19 6 0.9594 -5.1009 -1.4651 20 6 -0.5597 -5.0068 -1.6214 21 6 0.1395 -6.3634 -1.7382 22 1 -0.4851 0.8400 0.0004 23 1 0.6247 -2.5563 -0.8920 24 1 0.6241 -2.5576 0.8879 25 1 2.8160 -3.6529 0.9258 26 1 2.9252 -3.5580 -0.8483 27 1 3.3502 -5.9472 -0.2186 28 1 1.9150 -6.9935 -0.1002 29 1 2.8954 -5.1543 2.1282 30 1 0.4765 -5.6361 2.1905 31 1 0.8054 -7.3785 2.0271 32 1 0.4105 -6.7823 4.3981 33 1 1.7329 -5.5933 4.3241 34 1 2.4036 -7.7585 5.2314 35 1 4.3582 -8.0852 3.9304 36 1 4.0087 -6.3445 4.0547 37 1 3.1983 -8.1687 1.7450 38 1 4.5141 -6.9699 1.7137 39 1 1.5738 -4.7142 -2.2781 40 1 -1.1473 -4.8185 -0.7228 41 1 -0.9446 -4.5584 -2.5373 42 1 0.2142 -6.8072 -2.7310 43 1 0.0122 -7.0684 -0.9166 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086703874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:18 Heat of formation + Delta-G solvation = -7.328655 kcal Electronic energy + Delta-G solvation = -19363.262817 eV Core-core repulsion = 16635.330718 eV Total energy + Delta-G solvation = -2727.932098 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.24427 -38.80181 -35.93701 -35.06080 -33.32078 -31.64616 -30.96586 -27.34235 -25.84921 -23.84579 -23.32140 -23.00749 -22.52509 -20.87778 -20.38662 -18.49855 -17.54581 -17.10170 -16.46427 -16.37493 -15.60276 -15.48827 -15.30924 -14.86704 -14.46225 -14.27326 -13.99884 -13.82706 -13.52987 -13.16874 -12.99629 -12.92710 -12.70982 -12.42757 -12.28285 -12.11075 -12.06959 -11.56283 -11.44340 -11.31679 -11.29029 -11.13812 -11.06434 -10.80890 -10.51991 -9.39532 -9.08686 -8.19249 -6.30556 1.38103 1.39608 1.50513 2.39238 2.93628 2.96985 3.13756 3.34310 3.84257 3.94899 4.01046 4.09297 4.16773 4.33185 4.35168 4.39053 4.49971 4.51344 4.60453 4.63137 4.75068 4.81595 4.82765 4.84655 4.95224 4.98154 5.02874 5.09824 5.13475 5.17503 5.28998 5.35501 5.40635 5.49041 5.55543 5.72782 5.83229 6.09044 6.15070 6.34542 6.41715 6.54435 6.87279 7.38184 8.92633 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018232 B = 0.005731 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.411024 B = 4884.139828 C = 5775.290903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.056 0.944 9 C 0.046 3.954 10 C 0.085 3.915 11 N -0.515 5.515 12 C 0.066 3.934 13 C -0.081 4.081 14 C -0.094 4.094 15 C 0.058 3.942 16 N -0.690 5.690 17 C 0.058 3.942 18 C -0.105 4.105 19 C -0.005 4.005 20 C -0.172 4.172 21 C -0.144 4.144 22 H 0.263 0.737 23 H -0.004 1.004 24 H -0.014 1.014 25 H 0.058 0.942 26 H 0.016 0.984 27 H 0.029 0.971 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.016 0.984 34 H 0.350 0.650 35 H 0.092 0.908 36 H 0.020 0.980 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.115 0.885 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.069 -16.780 3.528 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.074 0.926 9 C 0.008 3.992 10 C -0.043 4.043 11 N -0.239 5.239 12 C -0.061 4.061 13 C -0.100 4.100 14 C -0.132 4.132 15 C -0.071 4.071 16 N -0.322 5.322 17 C -0.071 4.071 18 C -0.144 4.144 19 C -0.114 4.114 20 C -0.210 4.210 21 C -0.181 4.181 22 H 0.072 0.928 23 H 0.015 0.985 24 H 0.004 0.996 25 H 0.076 0.924 26 H 0.034 0.966 27 H 0.047 0.953 28 H 0.104 0.896 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.034 0.966 34 H 0.169 0.831 35 H 0.111 0.889 36 H 0.039 0.961 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.133 0.867 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.353 -17.054 3.338 17.915 hybrid contribution 1.014 2.175 0.032 2.400 sum 5.367 -14.880 3.370 16.173 Atomic orbital electron populations 1.70113 1.07749 1.27640 1.51445 1.25917 0.95704 1.03113 0.94681 0.85487 0.78669 0.78614 0.78510 1.19728 1.20641 1.18865 1.21642 0.93317 0.92550 1.50883 0.92612 1.18778 0.93969 0.91498 0.94913 1.21965 0.94956 0.88804 0.98536 1.61745 1.36395 1.02079 1.23647 1.22158 0.94788 0.93740 0.95428 1.21157 0.96357 0.98138 0.94390 1.21404 0.96663 1.01116 0.94028 1.21932 0.96465 0.92119 0.96622 1.60312 1.08485 1.44578 1.18833 1.21939 0.90669 0.99567 0.94940 1.21569 0.98565 0.98666 0.95554 1.22381 0.94121 1.04348 0.90506 1.22952 0.94699 1.01042 1.02351 1.23118 1.01452 0.89952 1.03559 0.92826 0.98549 0.99585 0.92372 0.96584 0.95275 0.89586 0.93800 0.92980 0.91422 0.90127 0.96604 0.83119 0.88948 0.96134 0.90636 0.91078 0.90827 0.90239 0.88964 0.86682 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 2 C 0.00 0.23 5.46 84.66 0.46 0.69 16 3 Si 0.96 45.06 29.54 68.60 2.03 47.08 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.55 -31.96 9.11 25.60 0.23 -31.73 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.05 2.53 5.11 29.85 0.15 2.68 16 10 C 0.08 3.74 4.73 86.30 0.41 4.14 16 11 N -0.52 -18.81 4.08 -871.01 -3.56 -22.37 16 12 C 0.07 1.92 4.32 86.30 0.37 2.29 16 13 C -0.08 -2.25 2.30 -10.71 -0.02 -2.27 16 14 C -0.09 -2.60 5.26 30.69 0.16 -2.44 16 15 C 0.06 1.41 6.55 86.37 0.57 1.97 16 16 N -0.69 -14.12 6.85 -513.75 -3.52 -17.64 16 17 C 0.06 1.15 6.55 86.33 0.57 1.71 16 18 C -0.11 -2.26 5.38 30.65 0.16 -2.10 16 19 C 0.00 -0.16 4.42 44.92 0.20 0.04 16 20 C -0.17 -5.74 10.20 30.62 0.31 -5.43 16 21 C -0.14 -3.71 9.52 30.62 0.29 -3.42 16 22 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 23 H 0.00 -0.23 7.23 -2.39 -0.02 -0.25 16 24 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 25 H 0.06 2.54 6.46 -2.39 -0.02 2.52 16 26 H 0.02 0.71 7.94 -2.39 -0.02 0.69 16 27 H 0.03 0.84 8.00 -2.39 -0.02 0.82 16 28 H 0.09 2.20 6.47 -2.39 -0.02 2.19 16 29 H 0.04 1.45 6.62 -2.39 -0.02 1.43 16 30 H 0.05 1.74 7.86 -2.39 -0.02 1.72 16 31 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.35 5.71 8.90 -89.69 -0.80 4.92 16 35 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 2.64 7.97 -2.39 -0.02 2.62 16 40 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 42 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.10 2.50 7.43 -2.39 -0.02 2.49 16 Total: -1.00 -65.51 334.47 -0.74 -66.25 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.16 Total: 17.98 kcal Atomic # 6 Polarization: -37.71 SS G_CDS: 3.86 Total: -33.85 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -6.79 Total: -97.47 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -65.51 -0.74 -66.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086703874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.925 kcal (2) G-P(sol) polarization free energy of solvation -65.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds