Wall clock time and date at job start Mon Mar 30 2020 04:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46910 * 109.46951 * 2 1 4 4 C 1.46897 * 110.99953 * 72.60038 * 3 2 1 5 5 C 1.50699 * 109.47229 * 286.04668 * 4 3 2 6 6 H 1.07998 * 120.00281 * 355.34346 * 5 4 3 7 7 C 1.37885 * 119.99871 * 175.34411 * 5 4 3 8 8 N 1.31510 * 119.99946 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99823 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46994 * 89.99711 * 9 7 5 11 11 H 1.48489 * 109.46889 * 209.99838 * 9 7 5 12 12 H 1.48501 * 109.47021 * 329.99952 * 9 7 5 13 13 C 1.46898 * 110.99871 * 196.55485 * 3 2 1 14 14 C 1.50706 * 109.47084 * 76.02238 * 13 3 2 15 15 N 1.30828 * 125.95760 * 83.47333 * 14 13 3 16 16 C 1.33242 * 109.82870 * 180.02562 * 15 14 13 17 17 N 1.30719 * 108.94762 * 0.02562 * 16 15 14 18 18 N 1.34423 * 125.96327 * 263.17032 * 14 13 3 19 19 C 1.46500 * 126.82086 * 359.97438 * 18 14 13 20 20 C 1.53002 * 109.47057 * 126.79637 * 19 18 14 21 21 C 1.53001 * 109.47378 * 246.79510 * 19 18 14 22 22 H 1.08999 * 109.46756 * 170.49823 * 1 2 3 23 23 H 1.09000 * 109.47738 * 290.50237 * 1 2 3 24 24 H 1.08998 * 109.47134 * 50.50544 * 1 2 3 25 25 H 1.08991 * 109.47824 * 239.99975 * 2 1 3 26 26 H 1.09005 * 109.47419 * 119.99469 * 2 1 3 27 27 H 1.08998 * 109.47376 * 46.05104 * 4 3 2 28 28 H 1.08997 * 109.46925 * 166.04647 * 4 3 2 29 29 H 0.97000 * 119.99948 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.46955 * 196.02206 * 13 3 2 31 31 H 1.08999 * 109.47368 * 316.02628 * 13 3 2 32 32 H 1.08004 * 125.53017 * 180.02562 * 16 15 14 33 33 H 1.08998 * 109.47398 * 6.79615 * 19 18 14 34 34 H 1.09006 * 109.47343 * 185.38643 * 20 19 18 35 35 H 1.09004 * 109.47132 * 305.38836 * 20 19 18 36 36 H 1.09004 * 109.47347 * 65.39051 * 20 19 18 37 37 H 1.09001 * 109.46680 * 60.00325 * 21 19 18 38 38 H 1.08996 * 109.47106 * 180.02562 * 21 19 18 39 39 H 1.08998 * 109.46941 * 300.00384 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.8084 2.0181 1.3087 5 6 0.3459 2.3372 1.4822 6 1 -0.3448 2.1636 0.6703 7 6 -0.1106 2.8509 2.6776 8 7 0.7303 3.0618 3.6665 9 14 -1.9234 3.2471 2.8924 10 1 -2.6318 2.0534 3.4202 11 1 -2.0738 4.3744 3.8471 12 1 -2.5056 3.6283 1.5806 13 6 3.4345 1.4432 -0.3908 14 6 3.5523 1.2527 -1.8811 15 7 3.4115 2.1848 -2.7882 16 6 3.5811 1.6631 -4.0025 17 7 3.8329 0.3859 -3.8843 18 7 3.8260 0.0966 -2.5099 19 6 4.0652 -1.2071 -1.8859 20 6 3.1333 -2.2490 -2.5078 21 6 5.5198 -1.6228 -2.1146 22 1 -0.3633 -1.0136 -0.1696 23 1 -0.3634 0.3599 0.9625 24 1 -0.3633 0.6536 -0.7930 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 2.1278 1.3371 2.0975 28 1 2.3902 2.9381 1.3654 29 1 0.4093 3.4236 4.5073 30 1 3.8481 2.4132 -0.1147 31 1 3.9855 0.6542 0.1210 32 1 3.5205 2.2072 -4.9334 33 1 3.8709 -1.1387 -0.8155 34 1 3.2428 -3.1961 -1.9794 35 1 2.1015 -1.9064 -2.4295 36 1 3.3916 -2.3869 -3.5578 37 1 6.1837 -0.8805 -1.6714 38 1 5.6977 -2.5929 -1.6506 39 1 5.7141 -1.6911 -3.1849 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088593035.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:58 Heat of formation + Delta-G solvation = 92.414868 kcal Electronic energy + Delta-G solvation = -19366.749097 eV Core-core repulsion = 16539.601859 eV Total energy + Delta-G solvation = -2827.147238 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.85911 -37.20613 -36.00500 -32.74272 -31.61023 -30.75945 -29.71815 -27.62386 -27.44541 -25.06738 -23.31674 -22.43227 -21.02534 -20.36286 -19.42513 -17.12241 -16.39475 -15.82763 -14.87444 -14.75357 -14.52271 -14.36175 -13.98616 -13.69803 -13.26748 -13.00914 -12.70098 -12.43419 -12.40416 -12.11449 -11.61249 -11.58712 -11.29272 -11.20299 -11.08126 -10.95174 -10.71080 -10.58542 -10.29880 -9.62421 -9.60277 -9.46114 -9.21155 -9.12375 -8.41482 -7.44311 -6.03998 -4.02190 1.87909 2.46144 3.27973 3.31279 3.38519 3.43588 4.34656 4.39394 4.47153 4.71527 4.80381 4.87903 4.99696 5.21194 5.30884 5.34466 5.44557 5.54284 5.55274 5.68660 5.73581 5.93738 5.97303 5.99530 6.07671 6.25077 6.45177 6.58094 6.74478 6.81533 7.02952 7.11714 7.23236 7.32391 7.78167 8.00847 8.08279 8.45485 8.47034 9.03111 9.59146 11.06710 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.030432 B = 0.005602 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.850671 B = 4997.326630 C = 5188.282459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.061 3.939 3 N -0.525 5.525 4 C 0.194 3.806 5 C -0.503 4.503 6 H 0.074 0.926 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.272 1.272 13 C 0.127 3.873 14 C 0.305 3.695 15 N -0.530 5.530 16 C 0.192 3.808 17 N -0.330 5.330 18 N -0.374 5.374 19 C 0.148 3.852 20 C -0.157 4.157 21 C -0.160 4.160 22 H 0.030 0.970 23 H 0.093 0.907 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.026 0.974 27 H 0.000 1.000 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.106 0.894 31 H 0.045 0.955 32 H 0.211 0.789 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.371 -9.796 -9.470 15.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.067 4.067 3 N -0.251 5.251 4 C 0.070 3.930 5 C -0.541 4.541 6 H 0.092 0.908 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.197 1.197 13 C -0.004 4.004 14 C 0.028 3.972 15 N -0.257 5.257 16 C -0.111 4.111 17 N -0.158 5.158 18 N -0.166 5.166 19 C 0.045 3.955 20 C -0.215 4.215 21 C -0.218 4.218 22 H 0.049 0.951 23 H 0.112 0.888 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.044 0.956 27 H 0.018 0.982 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.124 0.876 31 H 0.063 0.937 32 H 0.228 0.772 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.177 -9.676 -10.134 15.742 hybrid contribution -0.495 -0.226 0.891 1.044 sum 6.682 -9.901 -9.243 15.103 Atomic orbital electron populations 1.22059 0.94588 0.98731 1.05138 1.22037 0.97517 0.89200 0.97930 1.62058 1.12019 1.16416 1.34638 1.19853 0.98099 0.93650 0.81395 1.21324 0.93084 1.41142 0.98567 0.90800 1.24982 0.97841 0.95898 0.95978 1.69949 1.34359 1.45473 1.04155 0.86542 0.85194 0.77943 0.78076 1.20777 1.21295 1.19696 1.20559 0.93187 1.03025 0.83632 1.24532 0.93586 0.81665 0.97459 1.70516 1.24619 1.31989 0.98574 1.25893 0.98304 0.89498 0.97444 1.77861 1.27224 1.17303 0.93439 1.50559 1.52894 1.08922 1.04250 1.21426 0.96828 0.79859 0.97337 1.22099 0.99584 0.97749 1.02096 1.22147 0.94190 1.01979 1.03443 0.95054 0.88835 0.92753 0.93673 0.95551 0.98233 0.95178 0.92954 0.87589 0.93715 0.77231 0.87773 0.90711 0.91595 0.91177 0.92058 0.90562 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.54 37.16 0.32 -2.53 16 2 C 0.06 1.14 5.15 -3.82 -0.02 1.12 16 3 N -0.53 -10.96 4.40 -237.52 -1.05 -12.00 16 4 C 0.19 4.80 4.75 -4.98 -0.02 4.77 16 5 C -0.50 -13.47 6.91 -34.44 -0.24 -13.70 16 6 H 0.07 1.98 5.75 -52.49 -0.30 1.68 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 8 N -0.90 -25.90 13.29 55.43 0.74 -25.16 16 9 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.13 2.25 5.25 -4.97 -0.03 2.22 16 14 C 0.30 5.32 6.86 -155.70 -1.07 4.25 16 15 N -0.53 -9.81 11.19 -11.97 -0.13 -9.94 16 16 C 0.19 3.00 13.03 -91.81 -1.20 1.80 16 17 N -0.33 -5.21 12.54 29.29 0.37 -4.85 16 18 N -0.37 -5.70 3.15 -51.88 -0.16 -5.86 16 19 C 0.15 1.75 2.59 -67.93 -0.18 1.57 16 20 C -0.16 -1.67 9.16 37.16 0.34 -1.33 16 21 C -0.16 -1.54 9.52 37.16 0.35 -1.19 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.09 2.04 5.60 -51.93 -0.29 1.75 16 24 H 0.05 1.10 7.83 -51.93 -0.41 0.70 16 25 H 0.04 0.75 4.13 -51.93 -0.21 0.53 16 26 H 0.03 0.48 7.83 -51.93 -0.41 0.08 16 27 H 0.00 0.00 7.81 -51.93 -0.41 -0.41 16 28 H 0.03 0.79 7.64 -51.93 -0.40 0.40 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.11 1.91 7.62 -51.93 -0.40 1.51 16 31 H 0.04 0.69 6.81 -51.93 -0.35 0.33 16 32 H 0.21 2.42 8.06 -52.48 -0.42 2.00 16 33 H 0.10 1.20 5.75 -51.93 -0.30 0.91 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.81 7.19 -51.93 -0.37 0.44 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 311.80 15.07 4.70 4.70 Total: -1.00 -30.87 311.80 -8.33 -39.20 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.94 Total: -0.67 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.83 Total: -1.63 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.24 Total: -57.81 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.87 -8.33 -39.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088593035.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.613 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds