Wall clock time and date at job start Mon Mar 30 2020 04:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99806 * 2 1 4 4 H 1.48503 * 109.47060 * 269.99363 * 3 2 1 5 5 H 1.48494 * 109.47611 * 29.99461 * 3 2 1 6 6 H 1.48500 * 109.47216 * 149.99975 * 3 2 1 7 7 C 1.37877 * 120.00284 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99941 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00456 * 180.02562 * 7 2 1 10 10 N 1.46892 * 109.47346 * 179.97438 * 9 7 2 11 11 C 1.46842 * 111.00192 * 293.95195 * 10 9 7 12 12 C 1.53039 * 109.52666 * 185.84212 * 11 10 9 13 13 C 1.53123 * 109.27546 * 300.81951 * 12 11 10 14 14 C 1.53120 * 109.21163 * 57.62218 * 13 12 11 15 15 H 1.09000 * 109.50719 * 62.32149 * 14 13 12 16 16 N 1.46904 * 109.50264 * 182.43665 * 14 13 12 17 17 C 1.46849 * 110.99912 * 59.20909 * 16 14 13 18 18 C 1.53039 * 109.52483 * 174.16087 * 17 16 14 19 19 C 1.53124 * 109.27594 * 59.17768 * 18 17 16 20 20 C 1.53120 * 109.16244 * 302.34668 * 19 18 17 21 21 C 1.46842 * 110.99909 * 295.00138 * 16 14 13 22 22 C 1.46848 * 110.99938 * 58.16124 * 10 9 7 23 23 H 0.96996 * 120.00029 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47461 * 59.99207 * 9 7 2 25 25 H 1.09004 * 109.46659 * 299.99985 * 9 7 2 26 26 H 1.09001 * 109.46203 * 65.82095 * 11 10 9 27 27 H 1.09004 * 109.46228 * 305.85648 * 11 10 9 28 28 H 1.08999 * 109.50420 * 180.88146 * 12 11 10 29 29 H 1.09001 * 109.50541 * 60.75500 * 12 11 10 30 30 H 1.09002 * 109.52319 * 177.56011 * 13 12 11 31 31 H 1.08995 * 109.52318 * 297.68693 * 13 12 11 32 32 H 1.09001 * 109.46179 * 294.17991 * 17 16 14 33 33 H 1.09003 * 109.46264 * 54.14719 * 17 16 14 34 34 H 1.09003 * 109.50247 * 299.24033 * 18 17 16 35 35 H 1.09001 * 109.53751 * 179.13989 * 18 17 16 36 36 H 1.08998 * 109.51995 * 182.44043 * 19 18 17 37 37 H 1.09002 * 109.57188 * 62.28602 * 19 18 17 38 38 H 1.08994 * 109.50223 * 297.71380 * 20 19 18 39 39 H 1.08999 * 109.53168 * 177.61353 * 20 19 18 40 40 H 1.08997 * 109.46515 * 305.85554 * 21 16 14 41 41 H 1.09004 * 109.46286 * 65.83403 * 21 16 14 42 42 H 1.08999 * 109.46555 * 294.17605 * 22 10 9 43 43 H 1.09000 * 109.46248 * 54.14574 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5790 0.0022 11 6 3.6514 -3.2598 1.2554 12 6 4.2996 -4.6459 1.2826 13 6 3.8050 -5.4589 0.0830 14 6 4.1375 -4.7054 -1.2079 15 1 5.2186 -4.6024 -1.3010 16 7 3.6141 -5.4516 -2.3600 17 6 2.1592 -5.6235 -2.2587 18 6 1.6306 -6.2735 -3.5394 19 6 2.3114 -7.6311 -3.7353 20 6 3.8283 -7.4296 -3.7890 21 6 4.2931 -6.7459 -2.5011 22 6 3.4952 -3.3170 -1.1621 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6799 0.8910 25 1 3.8751 -0.6804 -0.8889 26 1 2.5684 -3.3639 1.3221 27 1 4.0125 -2.6734 2.1003 28 1 4.0270 -5.1571 2.2059 29 1 5.3834 -4.5420 1.2297 30 1 4.2971 -6.4314 0.0742 31 1 2.7263 -5.5971 0.1565 32 1 1.9273 -6.2608 -1.4054 33 1 1.6870 -4.6503 -2.1239 34 1 1.8500 -5.6301 -4.3914 35 1 0.5529 -6.4152 -3.4582 36 1 1.9700 -8.0783 -4.6688 37 1 2.0605 -8.2889 -2.9031 38 1 4.0822 -6.8044 -4.6450 39 1 4.3212 -8.3969 -3.8859 40 1 5.3708 -6.5881 -2.5423 41 1 4.0510 -7.3781 -1.6468 42 1 2.4130 -3.4208 -1.0841 43 1 3.7428 -2.7721 -2.0731 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107795106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:41 Heat of formation + Delta-G solvation = -25.126231 kcal Electronic energy + Delta-G solvation = -19954.363802 eV Core-core repulsion = 17225.659943 eV Total energy + Delta-G solvation = -2728.703859 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.98608 -38.79982 -35.65464 -34.35154 -33.15133 -31.79980 -30.10538 -29.12108 -25.69288 -25.27411 -23.94784 -23.16456 -22.31916 -20.92511 -19.93093 -18.80597 -17.47613 -16.56555 -16.28435 -15.87037 -15.60476 -15.30252 -15.25970 -15.14008 -14.77070 -14.47192 -14.15146 -13.96945 -13.68378 -13.39692 -13.08107 -12.98064 -12.89408 -12.32010 -12.19995 -12.14641 -11.94533 -11.81668 -11.77356 -11.57877 -11.47728 -11.25109 -11.20871 -10.99289 -10.80535 -9.16252 -8.97151 -8.33190 -6.38434 1.34948 1.35610 1.47956 2.32623 2.82766 3.02206 3.42413 3.83580 3.90902 3.94458 4.02702 4.07787 4.13783 4.26075 4.39263 4.48425 4.50658 4.58446 4.65027 4.72026 4.77013 4.84915 4.90173 4.93392 4.96220 5.01392 5.03671 5.06560 5.10588 5.16031 5.21379 5.23232 5.24563 5.33494 5.38081 5.50907 5.53517 6.04892 6.15999 6.27079 6.34640 6.45630 6.67564 7.28508 8.83154 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026411 B = 0.005964 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.923259 B = 4693.959565 C = 5249.820055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.245 1.245 7 C -0.549 4.549 8 H 0.031 0.969 9 C 0.160 3.840 10 N -0.528 5.528 11 C 0.059 3.941 12 C -0.101 4.101 13 C -0.143 4.143 14 C 0.099 3.901 15 H 0.093 0.907 16 N -0.538 5.538 17 C 0.052 3.948 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.112 4.112 21 C 0.054 3.946 22 C 0.080 3.920 23 H 0.266 0.734 24 H 0.033 0.967 25 H 0.027 0.973 26 H 0.003 0.997 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.031 0.969 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.037 0.963 42 H 0.012 0.988 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.849 -15.161 -4.152 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.187 4.187 3 Si 0.773 3.227 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.168 1.168 7 C -0.588 4.588 8 H 0.049 0.951 9 C 0.033 3.967 10 N -0.251 5.251 11 C -0.069 4.069 12 C -0.139 4.139 13 C -0.182 4.182 14 C -0.010 4.010 15 H 0.111 0.889 16 N -0.262 5.262 17 C -0.076 4.076 18 C -0.153 4.153 19 C -0.153 4.153 20 C -0.150 4.150 21 C -0.073 4.073 22 C -0.049 4.049 23 H 0.075 0.925 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.022 0.978 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.055 0.945 42 H 0.030 0.970 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.322 -14.776 -4.620 18.607 hybrid contribution -1.712 0.772 0.877 2.072 sum 8.611 -14.004 -3.742 16.861 Atomic orbital electron populations 1.70079 1.08350 1.28164 1.52210 1.25930 0.95542 1.03464 0.93785 0.85668 0.79562 0.78237 0.79232 1.19259 1.20889 1.16808 1.21876 0.92725 0.93092 1.51075 0.95061 1.20046 0.91863 0.87898 0.96929 1.62328 1.57853 1.02561 1.02329 1.21975 0.96744 0.95828 0.92355 1.21492 1.01180 0.93242 0.98016 1.22171 1.00352 0.99702 0.96001 1.21612 0.99628 0.91680 0.88041 0.88902 1.62051 1.04003 1.19702 1.40487 1.22085 0.88654 0.99244 0.97643 1.21578 0.99589 0.97292 0.96813 1.21558 0.95625 0.95849 1.02284 1.21585 0.95653 1.00626 0.97135 1.22174 0.98909 0.88486 0.97776 1.21801 0.96056 0.93868 0.93160 0.92523 0.94901 0.95472 0.97829 0.91453 0.90319 0.90073 0.89891 0.93914 0.95068 0.93576 0.92001 0.91429 0.90488 0.92086 0.91758 0.89507 0.90017 0.94506 0.97016 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.91 13.96 21.45 0.30 -59.62 16 2 C 0.01 0.63 5.47 84.65 0.46 1.09 16 3 Si 0.95 44.59 27.47 68.60 1.88 46.48 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.24 -10.65 6.54 99.48 0.65 -10.00 16 7 C -0.55 -31.88 8.29 25.60 0.21 -31.66 16 8 H 0.03 2.04 6.08 -2.91 -0.02 2.02 16 9 C 0.16 7.85 4.20 85.56 0.36 8.21 16 10 N -0.53 -22.37 4.86 -900.94 -4.38 -26.74 16 11 C 0.06 2.31 5.13 86.33 0.44 2.75 16 12 C -0.10 -2.92 6.10 30.65 0.19 -2.73 16 13 C -0.14 -4.08 4.59 30.68 0.14 -3.94 16 14 C 0.10 3.11 2.40 44.97 0.11 3.22 16 15 H 0.09 2.78 8.08 -2.39 -0.02 2.76 16 16 N -0.54 -15.48 4.65 -870.77 -4.05 -19.53 16 17 C 0.05 1.58 4.64 86.33 0.40 1.98 16 18 C -0.11 -2.84 6.09 30.65 0.19 -2.66 16 19 C -0.12 -2.19 6.00 30.68 0.18 -2.01 16 20 C -0.11 -2.05 6.09 30.65 0.19 -1.86 16 21 C 0.05 1.17 5.03 86.33 0.43 1.60 16 22 C 0.08 3.28 4.12 86.33 0.36 3.63 16 23 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 24 H 0.03 1.58 7.12 -2.39 -0.02 1.57 16 25 H 0.03 1.32 7.57 -2.38 -0.02 1.30 16 26 H 0.00 0.15 7.03 -2.39 -0.02 0.14 16 27 H 0.07 2.54 8.06 -2.38 -0.02 2.52 16 28 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 29 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.08 1.93 6.79 -2.39 -0.02 1.92 16 31 H 0.04 1.38 6.40 -2.39 -0.02 1.36 16 32 H 0.03 0.94 6.57 -2.39 -0.02 0.92 16 33 H 0.05 1.75 6.01 -2.39 -0.01 1.73 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.61 8.08 -2.39 -0.02 1.59 16 41 H 0.04 0.77 6.79 -2.38 -0.02 0.75 16 42 H 0.01 0.56 4.68 -2.39 -0.01 0.55 16 43 H 0.05 2.35 8.12 -2.39 -0.02 2.33 16 Total: -1.00 -65.55 310.66 -1.68 -67.22 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.90 Total: 14.56 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 3.66 Total: -22.37 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -8.12 Total: -105.89 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.48 kcal Total: -65.55 -1.68 -67.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107795106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.098 kcal (2) G-P(sol) polarization free energy of solvation -65.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds