Wall clock time and date at job start Mon Mar 30 2020 04:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00003 * 2 1 4 4 H 1.48506 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47138 * 300.00134 * 3 2 1 6 6 H 1.48500 * 109.47082 * 60.00436 * 3 2 1 7 7 C 1.38811 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00093 * 163.06314 * 7 2 1 9 9 N 1.36928 * 120.00142 * 343.06594 * 7 2 1 10 10 C 1.46933 * 120.63185 * 331.84302 * 9 7 2 11 11 C 1.53182 * 108.77623 * 233.61199 * 10 9 7 12 12 C 1.53043 * 109.31546 * 305.36161 * 11 10 9 13 13 C 1.53039 * 109.53623 * 61.36791 * 12 11 10 14 14 H 1.08998 * 109.49515 * 58.61661 * 13 12 11 15 15 N 1.46898 * 109.49601 * 178.68854 * 13 12 11 16 16 C 1.46900 * 110.99464 * 204.93543 * 15 13 12 17 17 C 1.53009 * 109.46950 * 180.02562 * 16 15 13 18 18 C 1.54270 * 110.02800 * 292.16450 * 17 16 15 19 19 C 1.54890 * 104.19350 * 217.10731 * 18 17 16 20 20 C 1.54882 * 102.74971 * 37.94184 * 19 18 17 21 21 C 1.53871 * 110.03136 * 175.00108 * 17 16 15 22 22 C 1.46938 * 120.60875 * 151.86722 * 9 7 2 23 23 H 0.97003 * 120.00203 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.58600 * 113.81962 * 10 9 7 25 25 H 1.09000 * 109.69819 * 353.46608 * 10 9 7 26 26 H 1.09004 * 109.49690 * 185.41140 * 11 10 9 27 27 H 1.08999 * 109.50259 * 65.32000 * 11 10 9 28 28 H 1.09006 * 109.45833 * 301.34747 * 12 11 10 29 29 H 1.09001 * 109.44963 * 181.38349 * 12 11 10 30 30 H 1.00902 * 111.00515 * 80.98230 * 15 13 12 31 31 H 1.08996 * 109.47301 * 299.99402 * 16 15 13 32 32 H 1.08993 * 109.47486 * 59.99728 * 16 15 13 33 33 H 1.09000 * 110.01538 * 53.60552 * 17 16 15 34 34 H 1.09003 * 110.48626 * 335.78220 * 18 17 16 35 35 H 1.09003 * 110.48402 * 98.42991 * 18 17 16 36 36 H 1.09007 * 110.75340 * 279.62749 * 19 18 17 37 37 H 1.09001 * 110.75409 * 156.26402 * 19 18 17 38 38 H 1.09002 * 110.48647 * 203.37983 * 20 19 18 39 39 H 1.08997 * 110.48773 * 80.74219 * 20 19 18 40 40 H 1.09004 * 110.02740 * 238.56641 * 21 17 16 41 41 H 1.08992 * 110.03599 * 359.97438 * 21 17 16 42 42 H 1.08996 * 109.60991 * 6.61860 * 22 9 7 43 43 H 1.09003 * 109.55985 * 246.19136 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0551 -1.2223 -0.2730 9 7 1.3701 -2.3624 0.3443 10 6 0.2262 -2.3409 1.2663 11 6 0.4980 -3.3203 2.4122 12 6 0.8128 -4.7017 1.8335 13 6 2.0681 -4.6176 0.9621 14 1 2.9031 -4.2544 1.5612 15 7 2.3874 -5.9501 0.4325 16 6 3.8171 -6.0611 0.1140 17 6 4.1105 -7.4591 -0.4343 18 6 3.9278 -8.5120 0.6784 19 6 5.0502 -9.5455 0.4112 20 6 6.2355 -8.6548 -0.0366 21 6 5.5777 -7.5499 -0.8888 22 6 1.8148 -3.6526 -0.2004 23 1 -0.4850 0.8401 0.0004 24 1 -0.6769 -2.6414 0.7351 25 1 0.0967 -1.3358 1.6676 26 1 -0.3825 -3.3857 3.0515 27 1 1.3477 -2.9688 2.9976 28 1 -0.0275 -5.0419 1.2282 29 1 0.9825 -5.4063 2.6478 30 1 1.8196 -6.1645 -0.3736 31 1 4.0815 -5.3147 -0.6351 32 1 4.4046 -5.8937 1.0167 33 1 3.4463 -7.6790 -1.2701 34 1 4.0553 -8.0557 1.6601 35 1 2.9483 -8.9837 0.6001 36 1 4.7612 -10.2326 -0.3842 37 1 5.2986 -10.0901 1.3222 38 1 6.9401 -9.2307 -0.6366 39 1 6.7357 -8.2216 0.8296 40 1 5.6256 -7.8147 -1.9451 41 1 6.0807 -6.5980 -0.7193 42 1 2.7357 -3.5128 -0.7664 43 1 1.0414 -4.0599 -0.8516 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108101631.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:13 Heat of formation + Delta-G solvation = -6.118727 kcal Electronic energy + Delta-G solvation = -19222.286175 eV Core-core repulsion = 16494.406543 eV Total energy + Delta-G solvation = -2727.879632 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.74129 -37.61221 -34.69384 -32.55974 -30.39814 -30.03914 -28.70074 -27.20791 -25.22022 -23.47456 -21.92937 -21.21921 -20.67984 -19.81635 -18.91960 -16.67957 -15.93757 -15.52098 -14.90514 -14.46495 -14.17557 -14.03012 -13.67681 -13.35909 -13.18358 -12.99889 -12.42338 -12.32065 -11.83433 -11.66511 -11.19342 -11.09449 -11.03781 -11.01909 -10.82652 -10.71740 -10.66676 -10.48168 -10.37698 -10.18544 -10.10576 -9.91074 -9.55975 -9.50509 -8.52076 -8.00111 -6.62436 -5.77886 -3.21333 3.36682 3.44436 3.46732 4.34160 4.51136 4.62419 4.66719 4.82128 5.23043 5.36213 5.40631 5.49490 5.55463 5.59160 5.61186 5.61850 5.68047 5.77469 5.83639 5.85173 5.96120 6.00088 6.03261 6.10266 6.15467 6.24578 6.28338 6.33083 6.45467 6.49180 6.66225 6.71241 6.80640 6.86408 6.95428 7.39867 7.50975 7.69225 7.75872 7.80438 8.45707 9.21959 9.85159 10.42353 11.29821 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.030717 B = 0.004586 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.318723 B = 6103.699559 C = 6749.324321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.253 4.253 8 H 0.064 0.936 9 N -0.589 5.589 10 C 0.170 3.830 11 C -0.143 4.143 12 C -0.093 4.093 13 C 0.070 3.930 14 H 0.071 0.929 15 N -0.685 5.685 16 C 0.066 3.934 17 C -0.090 4.090 18 C -0.105 4.105 19 C -0.129 4.129 20 C -0.124 4.124 21 C -0.121 4.121 22 C 0.125 3.875 23 H 0.253 0.747 24 H 0.016 0.984 25 H 0.086 0.914 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.335 0.665 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.047 0.953 43 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.465 -15.679 1.246 17.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.383 4.383 8 H 0.081 0.919 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.183 4.183 12 C -0.131 4.131 13 C -0.041 4.041 14 H 0.089 0.911 15 N -0.314 5.314 16 C -0.063 4.063 17 C -0.109 4.109 18 C -0.142 4.142 19 C -0.167 4.167 20 C -0.161 4.161 21 C -0.160 4.160 22 C -0.003 4.003 23 H 0.063 0.937 24 H 0.034 0.966 25 H 0.104 0.896 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.152 0.848 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 7.435 -15.805 1.856 17.565 hybrid contribution 0.429 1.490 -0.913 1.800 sum 7.865 -14.315 0.943 16.360 Atomic orbital electron populations 1.70048 1.05270 1.25369 1.53920 1.25040 0.95279 0.98381 1.00875 0.86241 0.79365 0.83976 0.77306 1.20282 1.21712 1.21484 1.19214 0.92477 0.84858 1.41742 0.91862 1.43993 1.35969 1.01200 1.50077 1.20787 0.88404 0.98300 0.88043 1.22197 1.00011 0.96277 0.99784 1.21329 0.96729 0.96871 0.98186 1.22134 0.97954 0.86816 0.97222 0.91093 1.60700 1.04443 1.29314 1.36989 1.22086 0.90018 0.94942 0.99270 1.21779 0.95902 0.95220 0.97971 1.22278 0.97975 0.95238 0.98744 1.22555 0.95882 0.97680 1.00574 1.22342 0.97488 0.96848 0.99461 1.22187 0.95384 0.99035 0.99357 1.21559 0.97198 0.88078 0.93492 0.93686 0.96556 0.89628 0.93189 0.92882 0.93017 0.93184 0.84806 0.95302 0.91378 0.91383 0.91328 0.91772 0.91929 0.92005 0.92170 0.91802 0.92057 0.91695 0.93458 0.96714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.49 11.19 55.49 0.62 -25.86 16 2 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 21.89 29.59 -169.99 -5.03 16.86 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.25 -7.08 9.58 -15.06 -0.14 -7.23 16 8 H 0.06 1.75 7.89 -52.48 -0.41 1.34 16 9 N -0.59 -15.09 2.99 -172.31 -0.52 -15.60 16 10 C 0.17 4.16 5.30 -3.71 -0.02 4.14 16 11 C -0.14 -2.83 6.08 -26.61 -0.16 -2.99 16 12 C -0.09 -1.66 5.49 -26.69 -0.15 -1.80 16 13 C 0.07 1.25 2.62 -67.59 -0.18 1.08 16 14 H 0.07 1.37 7.80 -51.93 -0.41 0.97 16 15 N -0.68 -10.16 6.07 -106.60 -0.65 -10.81 16 16 C 0.07 0.89 4.54 -3.82 -0.02 0.87 16 17 C -0.09 -1.00 3.09 -89.50 -0.28 -1.28 16 18 C -0.10 -1.12 6.19 -25.07 -0.16 -1.27 16 19 C -0.13 -1.18 6.91 -24.74 -0.17 -1.35 16 20 C -0.12 -1.12 6.83 -25.08 -0.17 -1.29 16 21 C -0.12 -1.22 6.46 -25.62 -0.17 -1.38 16 22 C 0.12 2.67 5.77 -3.70 -0.02 2.65 16 23 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.09 2.33 6.06 -51.93 -0.31 2.01 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.33 4.82 8.41 -39.29 -0.33 4.49 16 31 H 0.03 0.42 7.56 -51.93 -0.39 0.03 16 32 H 0.07 0.95 7.92 -51.93 -0.41 0.54 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.80 7.76 -51.93 -0.40 0.40 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 42 H 0.05 1.02 7.41 -51.93 -0.38 0.63 16 43 H 0.02 0.33 8.04 -51.93 -0.42 -0.09 16 LS Contribution 327.48 15.07 4.94 4.94 Total: -1.00 -28.77 327.48 -10.43 -39.20 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -8.08 Total: 1.13 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -1.71 Total: -9.86 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.54 Total: -52.28 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.77 -10.43 -39.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108101631.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.085 kcal (2) G-P(sol) polarization free energy of solvation -28.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds