Wall clock time and date at job start Mon Mar 30 2020 04:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00003 * 2 1 4 4 H 1.48506 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47138 * 300.00134 * 3 2 1 6 6 H 1.48500 * 109.47082 * 60.00436 * 3 2 1 7 7 C 1.38811 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00093 * 163.06314 * 7 2 1 9 9 N 1.36928 * 120.00142 * 343.06594 * 7 2 1 10 10 C 1.46933 * 120.63185 * 331.84302 * 9 7 2 11 11 C 1.53182 * 108.77623 * 233.61199 * 10 9 7 12 12 C 1.53043 * 109.31546 * 305.36161 * 11 10 9 13 13 C 1.53039 * 109.53623 * 61.36791 * 12 11 10 14 14 H 1.08998 * 109.49515 * 58.61661 * 13 12 11 15 15 N 1.46898 * 109.49601 * 178.68854 * 13 12 11 16 16 C 1.46900 * 110.99464 * 204.93543 * 15 13 12 17 17 C 1.53009 * 109.46950 * 180.02562 * 16 15 13 18 18 C 1.54270 * 110.02800 * 292.16450 * 17 16 15 19 19 C 1.54890 * 104.19350 * 217.10731 * 18 17 16 20 20 C 1.54882 * 102.74971 * 37.94184 * 19 18 17 21 21 C 1.53871 * 110.03136 * 175.00108 * 17 16 15 22 22 C 1.46938 * 120.60875 * 151.86722 * 9 7 2 23 23 H 0.97003 * 120.00203 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.58600 * 113.81962 * 10 9 7 25 25 H 1.09000 * 109.69819 * 353.46608 * 10 9 7 26 26 H 1.09004 * 109.49690 * 185.41140 * 11 10 9 27 27 H 1.08999 * 109.50259 * 65.32000 * 11 10 9 28 28 H 1.09006 * 109.45833 * 301.34747 * 12 11 10 29 29 H 1.09001 * 109.44963 * 181.38349 * 12 11 10 30 30 H 1.00902 * 111.00515 * 80.98230 * 15 13 12 31 31 H 1.08996 * 109.47301 * 299.99402 * 16 15 13 32 32 H 1.08993 * 109.47486 * 59.99728 * 16 15 13 33 33 H 1.09000 * 110.01538 * 53.60552 * 17 16 15 34 34 H 1.09003 * 110.48626 * 335.78220 * 18 17 16 35 35 H 1.09003 * 110.48402 * 98.42991 * 18 17 16 36 36 H 1.09007 * 110.75340 * 279.62749 * 19 18 17 37 37 H 1.09001 * 110.75409 * 156.26402 * 19 18 17 38 38 H 1.09002 * 110.48647 * 203.37983 * 20 19 18 39 39 H 1.08997 * 110.48773 * 80.74219 * 20 19 18 40 40 H 1.09004 * 110.02740 * 238.56641 * 21 17 16 41 41 H 1.08992 * 110.03599 * 359.97438 * 21 17 16 42 42 H 1.08996 * 109.60991 * 6.61860 * 22 9 7 43 43 H 1.09003 * 109.55985 * 246.19136 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0551 -1.2223 -0.2730 9 7 1.3701 -2.3624 0.3443 10 6 0.2262 -2.3409 1.2663 11 6 0.4980 -3.3203 2.4122 12 6 0.8128 -4.7017 1.8335 13 6 2.0681 -4.6176 0.9621 14 1 2.9031 -4.2544 1.5612 15 7 2.3874 -5.9501 0.4325 16 6 3.8171 -6.0611 0.1140 17 6 4.1105 -7.4591 -0.4343 18 6 3.9278 -8.5120 0.6784 19 6 5.0502 -9.5455 0.4112 20 6 6.2355 -8.6548 -0.0366 21 6 5.5777 -7.5499 -0.8888 22 6 1.8148 -3.6526 -0.2004 23 1 -0.4850 0.8401 0.0004 24 1 -0.6769 -2.6414 0.7351 25 1 0.0967 -1.3358 1.6676 26 1 -0.3825 -3.3857 3.0515 27 1 1.3477 -2.9688 2.9976 28 1 -0.0275 -5.0419 1.2282 29 1 0.9825 -5.4063 2.6478 30 1 1.8196 -6.1645 -0.3736 31 1 4.0815 -5.3147 -0.6351 32 1 4.4046 -5.8937 1.0167 33 1 3.4463 -7.6790 -1.2701 34 1 4.0553 -8.0557 1.6601 35 1 2.9483 -8.9837 0.6001 36 1 4.7612 -10.2326 -0.3842 37 1 5.2986 -10.0901 1.3222 38 1 6.9401 -9.2307 -0.6366 39 1 6.7357 -8.2216 0.8296 40 1 5.6256 -7.8147 -1.9451 41 1 6.0807 -6.5980 -0.7193 42 1 2.7357 -3.5128 -0.7664 43 1 1.0414 -4.0599 -0.8516 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108101631.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:13 Heat of formation + Delta-G solvation = -22.306807 kcal Electronic energy + Delta-G solvation = -19222.988142 eV Core-core repulsion = 16494.406543 eV Total energy + Delta-G solvation = -2728.581600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.94681 -38.93849 -36.23599 -34.30097 -32.31611 -31.32220 -29.50650 -28.52559 -27.23074 -24.65296 -23.74312 -22.80338 -21.44171 -21.11276 -20.20874 -18.69972 -16.93967 -16.85000 -16.64871 -15.81294 -15.59520 -15.32035 -15.16046 -14.85607 -14.56435 -14.21412 -14.10261 -13.88162 -13.36593 -13.00471 -12.86160 -12.71304 -12.41878 -12.02969 -11.99842 -11.95339 -11.90953 -11.79502 -11.72503 -11.63153 -11.41143 -11.35263 -11.22964 -11.07587 -10.60036 -9.41875 -8.64568 -7.89997 -5.37934 1.43221 1.44838 1.55654 2.47252 3.16107 3.23205 3.73662 3.81258 3.82493 3.92979 4.02641 4.19366 4.35600 4.39112 4.49111 4.57957 4.60931 4.66637 4.69236 4.76832 4.81546 4.88866 4.94068 4.98423 5.01662 5.08638 5.12806 5.18354 5.20317 5.26621 5.31019 5.36748 5.46848 5.51058 5.53223 5.61246 5.62081 5.74179 6.12756 6.35893 6.51301 7.10842 7.81313 8.33334 9.14821 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.030717 B = 0.004586 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.318723 B = 6103.699559 C = 6749.324321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.048 4.048 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.287 1.287 7 C -0.268 4.268 8 H 0.061 0.939 9 N -0.608 5.608 10 C 0.176 3.824 11 C -0.131 4.131 12 C -0.086 4.086 13 C 0.086 3.914 14 H 0.060 0.940 15 N -0.673 5.673 16 C 0.068 3.932 17 C -0.085 4.085 18 C -0.104 4.104 19 C -0.125 4.125 20 C -0.122 4.122 21 C -0.122 4.122 22 C 0.126 3.874 23 H 0.251 0.749 24 H -0.005 1.005 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.340 0.660 31 H 0.016 0.984 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.040 0.960 43 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.556 -17.224 1.633 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.243 4.243 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.398 4.398 8 H 0.079 0.921 9 N -0.332 5.332 10 C 0.050 3.950 11 C -0.171 4.171 12 C -0.124 4.124 13 C -0.025 4.025 14 H 0.078 0.922 15 N -0.302 5.302 16 C -0.061 4.061 17 C -0.104 4.104 18 C -0.141 4.141 19 C -0.163 4.163 20 C -0.160 4.160 21 C -0.160 4.160 22 C -0.002 4.002 23 H 0.060 0.940 24 H 0.013 0.987 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.158 0.842 31 H 0.034 0.966 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 8.543 -17.387 2.242 19.501 hybrid contribution 0.087 1.939 -1.082 2.222 sum 8.630 -15.447 1.161 17.733 Atomic orbital electron populations 1.70193 1.06688 1.25911 1.55094 1.25805 0.96067 1.01501 1.00961 0.85213 0.78535 0.79735 0.76996 1.19244 1.21697 1.21317 1.19506 0.92661 0.86187 1.41470 0.92101 1.44256 1.36091 1.02023 1.50860 1.20625 0.87495 0.97779 0.89078 1.22038 1.00881 0.96085 0.98098 1.21269 0.96441 0.95924 0.98761 1.21830 0.97759 0.87279 0.95645 0.92203 1.60714 1.05444 1.26710 1.37355 1.22120 0.88888 0.96264 0.98807 1.21747 0.96815 0.93715 0.98155 1.22244 0.98651 0.95423 0.97819 1.22539 0.95074 0.97367 1.01271 1.22347 0.97674 0.96553 0.99415 1.22194 0.94504 0.99252 1.00067 1.21692 0.96429 0.87218 0.94811 0.93971 0.98664 0.92937 0.90905 0.93249 0.92846 0.90787 0.84199 0.96568 0.91796 0.91201 0.92395 0.91858 0.91171 0.91159 0.90871 0.91933 0.91283 0.92347 0.94150 0.97130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.13 11.19 21.65 0.24 -55.88 16 2 C -0.05 -2.72 4.92 84.86 0.42 -2.30 16 3 Si 0.97 45.53 29.59 68.60 2.03 47.56 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 7 C -0.27 -15.23 9.58 84.03 0.81 -14.42 16 8 H 0.06 3.41 7.89 -2.91 -0.02 3.39 16 9 N -0.61 -31.66 2.99 -699.08 -2.09 -33.75 16 10 C 0.18 8.74 5.30 86.36 0.46 9.20 16 11 C -0.13 -5.07 6.08 30.67 0.19 -4.89 16 12 C -0.09 -2.90 5.49 30.62 0.17 -2.73 16 13 C 0.09 3.02 2.62 44.99 0.12 3.13 16 14 H 0.06 2.26 7.80 -2.39 -0.02 2.24 16 15 N -0.67 -18.95 6.07 -491.17 -2.98 -21.94 16 16 C 0.07 1.76 4.54 86.31 0.39 2.16 16 17 C -0.09 -1.76 3.09 -10.07 -0.03 -1.79 16 18 C -0.10 -2.00 6.19 31.67 0.20 -1.80 16 19 C -0.13 -1.96 6.91 31.88 0.22 -1.74 16 20 C -0.12 -1.93 6.83 31.67 0.22 -1.71 16 21 C -0.12 -2.23 6.46 31.32 0.20 -2.03 16 22 C 0.13 5.40 5.77 86.36 0.50 5.90 16 23 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 24 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 25 H 0.05 2.94 6.06 -2.39 -0.01 2.93 16 26 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 27 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.34 9.25 8.41 -89.69 -0.75 8.49 16 31 H 0.02 0.46 7.56 -2.39 -0.02 0.44 16 32 H 0.06 1.71 7.92 -2.39 -0.02 1.69 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.25 7.76 -2.39 -0.02 1.23 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.06 1.14 7.67 -2.39 -0.02 1.12 16 42 H 0.04 1.75 7.41 -2.39 -0.02 1.73 16 43 H 0.01 0.47 8.04 -2.39 -0.02 0.45 16 Total: -1.00 -61.89 327.48 1.24 -60.65 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.20 Total: 16.38 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 3.85 Total: -13.02 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -4.83 Total: -111.57 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -61.89 1.24 -60.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108101631.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.340 kcal (2) G-P(sol) polarization free energy of solvation -61.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds