Wall clock time and date at job start Mon Mar 30 2020 03:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 110.99382 * 2 1 4 4 C 1.53000 * 109.47355 * 293.95091 * 3 2 1 5 5 H 1.09004 * 109.46871 * 55.00567 * 4 3 2 6 6 C 1.47201 * 109.47360 * 295.00360 * 4 3 2 7 7 N 3.66497 * 112.02574 * 284.54472 * 2 1 3 8 8 C 1.52998 * 109.47205 * 175.00143 * 4 3 2 9 9 C 1.50699 * 109.47168 * 184.99986 * 8 4 3 10 10 H 1.08007 * 119.99830 * 0.02562 * 9 8 4 11 11 C 1.37879 * 120.00027 * 179.97438 * 9 8 4 12 12 N 1.31514 * 119.99739 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00231 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47099 * 89.99324 * 13 11 9 15 15 H 1.48495 * 109.47091 * 209.99761 * 13 11 9 16 16 H 1.48496 * 109.46911 * 329.99897 * 13 11 9 17 17 C 1.46899 * 110.99754 * 123.95151 * 2 1 3 18 18 C 1.53008 * 109.46323 * 163.88632 * 17 2 1 19 19 H 1.08990 * 110.27783 * 61.96126 * 18 17 2 20 20 C 1.54950 * 110.30213 * 184.05242 * 18 17 2 21 21 C 1.55423 * 100.89010 * 155.28414 * 20 18 17 22 22 C 1.54378 * 102.30917 * 325.99347 * 21 20 18 23 23 O 1.43239 * 107.59056 * 21.27936 * 22 21 20 24 24 H 1.08998 * 109.47330 * 302.47979 * 1 2 3 25 25 H 1.08999 * 109.47606 * 62.48720 * 1 2 3 26 26 H 1.09003 * 109.46589 * 182.48405 * 1 2 3 27 27 H 1.09002 * 109.47125 * 53.95486 * 3 2 1 28 28 H 1.09007 * 109.47052 * 173.95548 * 3 2 1 29 29 H 1.08995 * 109.47403 * 305.00339 * 8 4 3 30 30 H 1.09003 * 109.47339 * 65.00422 * 8 4 3 31 31 H 0.97003 * 120.00119 * 180.02562 * 12 11 9 32 32 H 1.08993 * 109.47420 * 43.88922 * 17 2 1 33 33 H 1.08998 * 109.47008 * 283.87615 * 17 2 1 34 34 H 1.08998 * 111.12771 * 273.27039 * 20 18 17 35 35 H 1.08997 * 111.13119 * 37.44227 * 20 18 17 36 36 H 1.08996 * 110.88306 * 207.75154 * 21 20 18 37 37 H 1.09005 * 110.92734 * 84.25019 * 21 20 18 38 38 H 1.09003 * 109.82633 * 261.76787 * 22 21 20 39 39 H 1.08993 * 109.83456 * 140.79770 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0575 -1.3183 5 1 0.5530 2.0058 -1.4691 6 6 2.3155 1.3778 -2.4304 7 7 2.8435 0.8532 -3.2886 8 6 2.0697 3.5225 -1.2689 9 6 1.6029 4.2288 -2.5155 10 1 1.0485 3.6871 -3.2677 11 6 1.8825 5.5669 -2.6955 12 7 1.4746 6.1834 -3.7832 13 14 2.8407 6.5041 -1.3943 14 1 4.2933 6.4157 -1.6897 15 1 2.4201 7.9282 -1.3998 16 1 2.5703 5.9132 -0.0591 17 6 1.9954 -0.7659 1.1376 18 6 3.4720 -1.0865 0.8969 19 1 4.0516 -0.1663 0.8257 20 6 4.0208 -1.9810 2.0369 21 6 5.2030 -2.6852 1.3144 22 6 4.6685 -2.8305 -0.1266 23 8 3.6243 -1.8656 -0.3003 24 1 -0.3634 0.5518 0.8669 25 1 -0.3634 0.4747 -0.9114 26 1 -0.3632 -1.0268 0.0445 27 1 1.5609 1.9274 0.8309 28 1 3.0797 1.3446 0.1082 29 1 1.6328 4.0032 -0.3937 30 1 3.1568 3.5746 -1.2073 31 1 1.6717 7.1247 -3.9100 32 1 1.4342 -1.6945 1.2413 33 1 1.8955 -0.1771 2.0494 34 1 4.3730 -1.3785 2.8741 35 1 3.2736 -2.7046 2.3629 36 1 5.4012 -3.6623 1.7550 37 1 6.0981 -2.0634 1.3353 38 1 4.2721 -3.8351 -0.2744 39 1 5.4706 -2.6397 -0.8395 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112559853.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:47 Heat of formation + Delta-G solvation = -22.664673 kcal Electronic energy + Delta-G solvation = -18789.905109 eV Core-core repulsion = 15925.474896 eV Total energy + Delta-G solvation = -2864.430213 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.61139 -37.83137 -35.53438 -33.53661 -32.22796 -31.84289 -30.42224 -27.68854 -26.40601 -24.37430 -22.21645 -21.62985 -21.39279 -20.46679 -17.12869 -16.85007 -16.57577 -16.00264 -15.48396 -14.78650 -14.67187 -14.28702 -13.96788 -13.49822 -13.19977 -13.07001 -12.67885 -12.42735 -12.10037 -12.05222 -11.84393 -11.76715 -11.54348 -11.35295 -11.26458 -11.10482 -11.00783 -10.95375 -10.65933 -10.15915 -9.92633 -9.70116 -9.42268 -9.27442 -8.58480 -8.13279 -6.07311 -4.07433 3.28690 3.35897 3.36421 3.68640 3.85885 3.94193 4.09071 4.32574 4.40916 4.59650 4.73681 4.90179 4.99353 5.10113 5.17501 5.27778 5.36420 5.40120 5.45499 5.50995 5.54410 5.58991 5.70355 5.74345 5.80073 5.84567 5.90899 6.03225 6.07909 6.28752 6.38182 6.98492 7.02710 7.14011 7.20129 7.26044 7.67788 8.45180 8.70553 8.97123 9.52676 11.05931 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027188 B = 0.005024 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.624879 B = 5571.360241 C = 5639.411373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.535 5.535 3 C 0.058 3.942 4 C 0.022 3.978 5 H 0.105 0.895 6 C 0.252 3.748 7 N -0.467 5.467 8 C -0.005 4.005 9 C -0.525 4.525 10 H 0.074 0.926 11 C 0.071 3.929 12 N -0.898 5.898 13 Si 0.877 3.123 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.263 1.263 17 C 0.059 3.941 18 C 0.084 3.916 19 H 0.070 0.930 20 C -0.151 4.151 21 C -0.155 4.155 22 C 0.047 3.953 23 O -0.354 6.354 24 H 0.026 0.974 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.035 0.965 30 H 0.020 0.980 31 H 0.264 0.736 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.655 -15.232 16.280 22.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.259 5.259 3 C -0.071 4.071 4 C 0.000 4.000 5 H 0.122 0.878 6 C -0.066 4.066 7 N -0.144 5.144 8 C -0.044 4.044 9 C -0.563 4.563 10 H 0.092 0.908 11 C -0.131 4.131 12 N -0.536 5.536 13 Si 0.704 3.296 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.188 1.188 17 C -0.069 4.069 18 C 0.026 3.974 19 H 0.087 0.913 20 C -0.190 4.190 21 C -0.193 4.193 22 C -0.030 4.030 23 O -0.273 6.273 24 H 0.045 0.955 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.470 -16.057 14.263 21.755 hybrid contribution 0.221 1.212 1.772 2.158 sum 3.691 -14.846 16.034 22.161 Atomic orbital electron populations 1.22452 0.87120 1.01595 1.01418 1.61906 1.07847 1.13815 1.42307 1.22340 1.00788 0.87420 0.96561 1.18944 0.99633 0.95146 0.86305 0.87759 1.28599 0.93035 0.91350 0.93577 1.80974 1.10260 1.11741 1.11411 1.19642 0.97000 0.88717 0.99066 1.21038 1.36549 0.95023 1.03721 0.90754 1.24987 0.95249 0.97560 0.95310 1.69909 1.46314 1.10934 1.26436 0.86822 0.80686 0.79261 0.82797 1.20257 1.21289 1.18796 1.22238 0.94429 0.98391 0.91874 1.23024 0.95901 0.94480 0.84043 0.91253 1.23312 0.97910 0.99261 0.98470 1.23127 0.98739 1.01600 0.95846 1.23107 0.90866 0.93242 0.95811 1.88641 1.54541 1.48937 1.35156 0.95513 0.90571 0.91750 0.93052 0.90426 0.94655 0.96182 0.92611 0.90385 0.93478 0.90004 0.90336 0.90299 0.90638 0.91739 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.27 60.07 0.56 0.82 16 2 N -0.54 -7.46 4.31 -242.91 -1.05 -8.50 16 3 C 0.06 0.86 4.17 -3.82 -0.02 0.84 16 4 C 0.02 0.41 2.13 -93.41 -0.20 0.21 16 5 H 0.10 1.87 6.39 -51.93 -0.33 1.53 16 6 C 0.25 5.55 13.67 -20.76 -0.28 5.27 16 7 N -0.47 -11.31 18.54 42.15 0.78 -10.52 16 8 C -0.01 -0.12 3.49 -27.88 -0.10 -0.21 16 9 C -0.53 -14.43 9.15 -34.44 -0.32 -14.74 16 10 H 0.07 2.24 7.84 -52.48 -0.41 1.83 16 11 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 12 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 13 Si 0.88 20.87 27.47 -169.99 -4.67 16.20 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 17 C 0.06 0.66 4.72 -3.82 -0.02 0.64 16 18 C 0.08 0.99 3.39 -25.70 -0.09 0.90 16 19 H 0.07 0.87 6.73 -51.93 -0.35 0.52 16 20 C -0.15 -1.27 6.58 -24.42 -0.16 -1.43 16 21 C -0.16 -1.30 7.02 -24.72 -0.17 -1.47 16 22 C 0.05 0.52 7.80 37.88 0.30 0.82 16 23 O -0.35 -5.26 10.93 -35.23 -0.39 -5.64 16 24 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 25 H 0.08 0.99 6.49 -51.93 -0.34 0.65 16 26 H 0.06 0.69 7.94 -51.93 -0.41 0.28 16 27 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 28 H 0.08 1.16 6.47 -51.93 -0.34 0.82 16 29 H 0.04 0.73 7.20 -51.93 -0.37 0.35 16 30 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.08 0.82 7.85 -51.93 -0.41 0.41 16 33 H 0.05 0.45 8.05 -51.93 -0.42 0.03 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.60 8.05 -51.93 -0.42 0.18 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 318.63 15.07 4.80 4.80 Total: -1.00 -33.16 318.63 -6.65 -39.81 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -6.31 Total: -3.08 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -0.60 Total: -6.44 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.51 Total: -45.65 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.39 Total: -5.64 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.16 -6.65 -39.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112559853.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.145 kcal (2) G-P(sol) polarization free energy of solvation -33.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds