Wall clock time and date at job start Mon Mar 30 2020 03:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 110.99382 * 2 1 4 4 C 1.53000 * 109.47355 * 293.95091 * 3 2 1 5 5 H 1.09004 * 109.46871 * 55.00567 * 4 3 2 6 6 C 1.47201 * 109.47360 * 295.00360 * 4 3 2 7 7 N 3.66497 * 112.02574 * 284.54472 * 2 1 3 8 8 C 1.52998 * 109.47205 * 175.00143 * 4 3 2 9 9 C 1.50699 * 109.47168 * 184.99986 * 8 4 3 10 10 H 1.08007 * 119.99830 * 0.02562 * 9 8 4 11 11 C 1.37879 * 120.00027 * 179.97438 * 9 8 4 12 12 N 1.31514 * 119.99739 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00231 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47099 * 89.99324 * 13 11 9 15 15 H 1.48495 * 109.47091 * 209.99761 * 13 11 9 16 16 H 1.48496 * 109.46911 * 329.99897 * 13 11 9 17 17 C 1.46899 * 110.99754 * 123.95151 * 2 1 3 18 18 C 1.53008 * 109.46323 * 163.88632 * 17 2 1 19 19 H 1.08990 * 110.27783 * 61.96126 * 18 17 2 20 20 C 1.54950 * 110.30213 * 184.05242 * 18 17 2 21 21 C 1.55423 * 100.89010 * 155.28414 * 20 18 17 22 22 C 1.54378 * 102.30917 * 325.99347 * 21 20 18 23 23 O 1.43239 * 107.59056 * 21.27936 * 22 21 20 24 24 H 1.08998 * 109.47330 * 302.47979 * 1 2 3 25 25 H 1.08999 * 109.47606 * 62.48720 * 1 2 3 26 26 H 1.09003 * 109.46589 * 182.48405 * 1 2 3 27 27 H 1.09002 * 109.47125 * 53.95486 * 3 2 1 28 28 H 1.09007 * 109.47052 * 173.95548 * 3 2 1 29 29 H 1.08995 * 109.47403 * 305.00339 * 8 4 3 30 30 H 1.09003 * 109.47339 * 65.00422 * 8 4 3 31 31 H 0.97003 * 120.00119 * 180.02562 * 12 11 9 32 32 H 1.08993 * 109.47420 * 43.88922 * 17 2 1 33 33 H 1.08998 * 109.47008 * 283.87615 * 17 2 1 34 34 H 1.08998 * 111.12771 * 273.27039 * 20 18 17 35 35 H 1.08997 * 111.13119 * 37.44227 * 20 18 17 36 36 H 1.08996 * 110.88306 * 207.75154 * 21 20 18 37 37 H 1.09005 * 110.92734 * 84.25019 * 21 20 18 38 38 H 1.09003 * 109.82633 * 261.76787 * 22 21 20 39 39 H 1.08993 * 109.83456 * 140.79770 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0575 -1.3183 5 1 0.5530 2.0058 -1.4691 6 6 2.3155 1.3778 -2.4304 7 7 2.8435 0.8532 -3.2886 8 6 2.0697 3.5225 -1.2689 9 6 1.6029 4.2288 -2.5155 10 1 1.0485 3.6871 -3.2677 11 6 1.8825 5.5669 -2.6955 12 7 1.4746 6.1834 -3.7832 13 14 2.8407 6.5041 -1.3943 14 1 4.2933 6.4157 -1.6897 15 1 2.4201 7.9282 -1.3998 16 1 2.5703 5.9132 -0.0591 17 6 1.9954 -0.7659 1.1376 18 6 3.4720 -1.0865 0.8969 19 1 4.0516 -0.1663 0.8257 20 6 4.0208 -1.9810 2.0369 21 6 5.2030 -2.6852 1.3144 22 6 4.6685 -2.8305 -0.1266 23 8 3.6243 -1.8656 -0.3003 24 1 -0.3634 0.5518 0.8669 25 1 -0.3634 0.4747 -0.9114 26 1 -0.3632 -1.0268 0.0445 27 1 1.5609 1.9274 0.8309 28 1 3.0797 1.3446 0.1082 29 1 1.6328 4.0032 -0.3937 30 1 3.1568 3.5746 -1.2073 31 1 1.6717 7.1247 -3.9100 32 1 1.4342 -1.6945 1.2413 33 1 1.8955 -0.1771 2.0494 34 1 4.3730 -1.3785 2.8741 35 1 3.2736 -2.7046 2.3629 36 1 5.4012 -3.6623 1.7550 37 1 6.0981 -2.0634 1.3353 38 1 4.2721 -3.8351 -0.2744 39 1 5.4706 -2.6397 -0.8395 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112559853.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:46 Heat of formation + Delta-G solvation = -45.855407 kcal Electronic energy + Delta-G solvation = -18790.910734 eV Core-core repulsion = 15925.474896 eV Total energy + Delta-G solvation = -2865.435838 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.49241 -39.06971 -37.06367 -35.41919 -33.72736 -32.97443 -31.36082 -29.28925 -27.33891 -25.70165 -23.36392 -23.09977 -22.35959 -21.43014 -18.90402 -18.36525 -17.67902 -16.93916 -16.69890 -16.00742 -15.89993 -15.61810 -15.11887 -14.84016 -14.59881 -14.31914 -14.08265 -13.83183 -13.51218 -13.32518 -13.13345 -12.87492 -12.74049 -12.60780 -12.53351 -12.42438 -12.07899 -11.92283 -11.75637 -11.70963 -11.54309 -11.45942 -11.20552 -10.73222 -10.35411 -9.08136 -8.23986 -6.29773 1.43149 1.44723 1.55807 2.09634 2.18611 2.41651 2.84006 3.12038 3.18471 3.36785 3.63660 3.82042 4.02300 4.07857 4.17079 4.31526 4.39047 4.48414 4.57978 4.62890 4.72898 4.73010 4.76401 4.85512 4.88599 4.91408 4.93928 5.03604 5.10325 5.17852 5.25197 5.30381 5.44651 5.63888 6.10359 6.20644 6.28737 6.38438 6.77555 6.95864 7.34440 8.93168 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027188 B = 0.005024 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.624879 B = 5571.360241 C = 5639.411373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.562 5.562 3 C 0.069 3.931 4 C 0.025 3.975 5 H 0.112 0.888 6 C 0.262 3.738 7 N -0.516 5.516 8 C -0.001 4.001 9 C -0.531 4.531 10 H 0.026 0.974 11 C 0.003 3.997 12 N -0.955 5.955 13 Si 0.949 3.051 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.222 1.222 17 C 0.062 3.938 18 C 0.072 3.928 19 H 0.056 0.944 20 C -0.140 4.140 21 C -0.148 4.148 22 C 0.037 3.963 23 O -0.395 6.395 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.024 0.976 31 H 0.265 0.735 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.120 -15.688 20.367 25.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.286 5.286 3 C -0.060 4.060 4 C 0.003 3.997 5 H 0.130 0.870 6 C -0.054 4.054 7 N -0.193 5.193 8 C -0.040 4.040 9 C -0.569 4.569 10 H 0.045 0.955 11 C -0.194 4.194 12 N -0.595 5.595 13 Si 0.771 3.229 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.144 1.144 17 C -0.065 4.065 18 C 0.015 3.985 19 H 0.074 0.926 20 C -0.178 4.178 21 C -0.186 4.186 22 C -0.040 4.040 23 O -0.315 6.315 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.927 -16.549 18.378 25.041 hybrid contribution 0.020 1.280 0.377 1.335 sum 3.947 -15.269 18.755 24.504 Atomic orbital electron populations 1.22453 0.86194 1.02437 1.01425 1.61808 1.08919 1.13378 1.44499 1.22186 1.01040 0.88291 0.94486 1.19101 0.99597 0.93565 0.87445 0.87030 1.29410 0.92118 0.90474 0.93422 1.80962 1.11976 1.13422 1.12982 1.19586 0.97149 0.90135 0.97172 1.21390 1.35472 0.95229 1.04824 0.95536 1.26052 0.96545 0.98874 0.97882 1.70094 1.48681 1.11421 1.29340 0.85689 0.78393 0.77482 0.81304 1.20302 1.21379 1.14393 1.22300 0.93883 0.98624 0.91732 1.23216 0.96423 0.94384 0.84491 0.92591 1.23289 0.97836 0.98997 0.97702 1.23115 0.98720 1.02921 0.93843 1.23258 0.90161 0.92922 0.97662 1.88595 1.55589 1.49940 1.37378 0.93422 0.92333 0.90784 0.90008 0.90560 0.91619 0.95811 0.92641 0.89633 0.90902 0.88005 0.89164 0.88106 0.90474 0.91069 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.27 127.69 1.18 1.67 16 2 N -0.56 -14.37 4.31 -922.43 -3.98 -18.35 16 3 C 0.07 1.85 4.17 86.30 0.36 2.21 16 4 C 0.02 0.90 2.13 -12.60 -0.03 0.87 16 5 H 0.11 3.91 6.39 -2.39 -0.02 3.89 16 6 C 0.26 11.70 13.67 89.44 1.22 12.93 16 7 N -0.52 -25.72 18.54 20.01 0.37 -25.35 16 8 C 0.00 -0.06 3.49 29.85 0.10 0.04 16 9 C -0.53 -29.48 9.15 25.60 0.23 -29.25 16 10 H 0.03 1.67 7.84 -2.91 -0.02 1.65 16 11 C 0.00 0.17 5.47 84.66 0.46 0.63 16 12 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 13 Si 0.95 41.93 27.47 68.60 1.88 43.82 16 14 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 15 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 16 H -0.22 -8.27 6.54 99.48 0.65 -7.62 16 17 C 0.06 1.20 4.72 86.31 0.41 1.61 16 18 C 0.07 1.56 3.39 31.26 0.11 1.67 16 19 H 0.06 1.32 6.73 -2.39 -0.02 1.30 16 20 C -0.14 -1.90 6.58 32.09 0.21 -1.69 16 21 C -0.15 -2.12 7.02 31.90 0.22 -1.90 16 22 C 0.04 0.79 7.80 72.45 0.56 1.36 16 23 O -0.40 -11.56 10.93 -148.98 -1.63 -13.19 16 24 H 0.05 0.83 8.12 -2.39 -0.02 0.81 16 25 H 0.06 1.45 6.49 -2.39 -0.02 1.44 16 26 H 0.07 1.43 7.94 -2.39 -0.02 1.42 16 27 H 0.08 1.72 8.10 -2.39 -0.02 1.70 16 28 H 0.08 2.08 6.47 -2.38 -0.02 2.07 16 29 H 0.07 2.41 7.20 -2.39 -0.02 2.39 16 30 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 31 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 32 H 0.09 1.52 7.85 -2.39 -0.02 1.51 16 33 H 0.07 1.05 8.05 -2.39 -0.02 1.03 16 34 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 1.03 8.05 -2.39 -0.02 1.01 16 36 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -75.20 318.63 2.96 -72.24 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.96 Total: 10.41 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 5.05 Total: -9.85 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -3.31 Total: -103.42 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -1.63 Total: -13.19 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.88 Total: 43.82 kcal Total: -75.20 2.96 -72.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112559853.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.380 kcal (2) G-P(sol) polarization free energy of solvation -75.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds