Wall clock time and date at job start Mon Mar 30 2020 04:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46731 * 2 1 4 4 H 1.09002 * 109.46826 * 180.70084 * 3 2 1 5 5 C 1.50694 * 109.47516 * 300.69962 * 3 2 1 6 6 H 1.08003 * 120.00254 * 120.00180 * 5 3 2 7 7 C 1.37883 * 119.99950 * 300.00260 * 5 3 2 8 8 N 1.31512 * 119.99817 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99947 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47062 * 90.00492 * 9 7 5 11 11 H 1.48510 * 109.46972 * 210.00136 * 9 7 5 12 12 H 1.48501 * 109.47229 * 329.99771 * 9 7 5 13 13 N 1.46899 * 109.47279 * 60.70459 * 3 2 1 14 14 C 1.46901 * 111.00367 * 86.37612 * 13 3 2 15 15 H 1.09000 * 109.46804 * 323.87823 * 14 13 3 16 16 C 1.52994 * 109.47268 * 83.87878 * 14 13 3 17 17 C 1.52998 * 109.46816 * 203.88055 * 14 13 3 18 18 C 1.52999 * 109.47615 * 65.00076 * 17 14 13 19 19 N 1.46494 * 109.47664 * 179.97438 * 18 17 14 20 20 C 1.34430 * 126.82894 * 124.99208 * 19 18 17 21 21 N 1.30834 * 108.07876 * 179.74084 * 20 19 18 22 22 C 1.33234 * 109.82653 * 0.26815 * 21 20 19 23 23 N 1.30713 * 108.95089 * 359.97438 * 22 21 20 24 24 H 1.09009 * 109.46861 * 55.69136 * 1 2 3 25 25 H 1.08998 * 109.46961 * 175.68507 * 1 2 3 26 26 H 1.08998 * 109.47741 * 295.68690 * 1 2 3 27 27 H 1.09000 * 109.47341 * 239.99962 * 2 1 3 28 28 H 1.08993 * 109.46970 * 119.99534 * 2 1 3 29 29 H 0.97001 * 120.00085 * 179.97438 * 8 7 5 30 30 H 1.00906 * 110.99652 * 210.33295 * 13 3 2 31 31 H 1.09001 * 109.47505 * 179.97438 * 16 14 13 32 32 H 1.08997 * 109.46985 * 300.00084 * 16 14 13 33 33 H 1.09000 * 109.47253 * 60.00219 * 16 14 13 34 34 H 1.08996 * 109.47256 * 304.99770 * 17 14 13 35 35 H 1.09008 * 109.46951 * 184.99657 * 17 14 13 36 36 H 1.08996 * 109.47058 * 59.99573 * 18 17 14 37 37 H 1.09008 * 109.46619 * 299.99785 * 18 17 14 38 38 H 1.08001 * 125.95754 * 0.02562 * 20 19 18 39 39 H 1.08006 * 125.52503 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 -0.0126 5 6 1.5235 2.1580 -1.2216 6 1 0.9038 3.0356 -1.1118 7 6 1.8421 1.6920 -2.4796 8 7 2.5963 0.6230 -2.6133 9 14 1.2014 2.5785 -3.9939 10 1 2.1745 3.6221 -4.4053 11 1 1.0239 1.6036 -5.1001 12 1 -0.1035 3.2142 -3.6803 13 7 1.5642 2.1301 1.2078 14 6 2.4785 1.9064 2.3357 15 1 2.8765 0.8929 2.2852 16 6 3.6304 2.9108 2.2653 17 6 1.7200 2.0915 3.6514 18 6 0.6475 1.0079 3.7788 19 7 -0.0784 1.1847 5.0389 20 6 -1.4074 1.3173 5.1916 21 7 -1.6583 1.4475 6.4690 22 6 -0.5196 1.4090 7.1595 23 7 0.4763 1.2525 6.3274 24 1 -0.3633 0.5793 -0.8489 25 1 -0.3633 -1.0247 -0.0773 26 1 -0.3634 0.4454 0.9261 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 2.8202 0.2950 -3.4983 30 1 1.4364 3.1162 1.0359 31 1 4.3086 2.7451 3.1024 32 1 4.1707 2.7789 1.3279 33 1 3.2324 3.9243 2.3158 34 1 1.2474 3.0736 3.6633 35 1 2.4164 2.0133 4.4864 36 1 1.1201 0.0258 3.7669 37 1 -0.0490 1.0861 2.9439 38 1 -2.1404 1.3122 4.3985 39 1 -0.4333 1.4926 8.2328 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124257148.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:52 Heat of formation + Delta-G solvation = 74.433091 kcal Electronic energy + Delta-G solvation = -18910.657057 eV Core-core repulsion = 16082.730070 eV Total energy + Delta-G solvation = -2827.926986 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.93626 -37.56671 -34.88712 -33.32082 -31.33588 -31.12205 -29.60746 -28.16364 -25.84909 -24.20985 -23.27006 -21.88381 -21.39053 -20.44115 -18.96216 -17.08472 -16.44206 -15.72054 -15.24686 -14.81583 -14.49187 -14.11462 -13.93866 -13.84151 -13.11397 -13.02214 -12.42518 -12.19525 -12.00877 -11.86437 -11.84710 -11.31741 -11.02488 -10.93965 -10.71444 -10.59934 -10.32446 -10.09282 -9.97288 -9.76376 -9.71073 -9.55815 -9.44744 -8.85928 -8.54077 -7.35301 -6.08652 -4.14209 1.73273 2.46370 3.02050 3.24185 3.32120 3.34641 4.34335 4.38376 4.60726 4.95672 5.05877 5.09715 5.23858 5.40083 5.47431 5.65035 5.69796 5.84812 5.96326 6.13948 6.24364 6.35181 6.42944 6.45375 6.50193 6.56070 6.56431 6.76222 6.91422 7.09544 7.24538 7.40580 7.64226 7.72317 7.77111 8.14637 8.17652 8.29781 8.57771 8.94960 9.51131 10.97162 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032840 B = 0.004795 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.404411 B = 5837.927042 C = 6164.473831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C 0.216 3.784 4 H 0.003 0.997 5 C -0.514 4.514 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.683 5.683 14 C 0.084 3.916 15 H 0.074 0.926 16 C -0.176 4.176 17 C -0.110 4.110 18 C 0.132 3.868 19 N -0.368 5.368 20 C 0.252 3.748 21 N -0.557 5.557 22 C 0.187 3.813 23 N -0.322 5.322 24 H 0.058 0.942 25 H 0.013 0.987 26 H 0.038 0.962 27 H 0.086 0.914 28 H 0.009 0.991 29 H 0.261 0.739 30 H 0.332 0.668 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.120 0.880 38 H 0.217 0.783 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 0.994 11.524 11.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.142 4.142 3 C 0.109 3.891 4 H 0.021 0.979 5 C -0.552 4.552 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.314 5.314 14 C -0.028 4.028 15 H 0.092 0.908 16 C -0.235 4.235 17 C -0.149 4.149 18 C 0.012 3.988 19 N -0.158 5.158 20 C -0.044 4.044 21 N -0.285 5.285 22 C -0.116 4.116 23 N -0.151 5.151 24 H 0.077 0.923 25 H 0.032 0.968 26 H 0.057 0.943 27 H 0.105 0.895 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.150 0.850 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.138 0.862 38 H 0.234 0.766 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -3.060 0.327 11.817 12.211 hybrid contribution 0.436 0.965 -1.423 1.774 sum -2.625 1.292 10.394 10.798 Atomic orbital electron populations 1.21469 0.97584 0.97462 1.01124 1.21456 0.94929 0.98388 0.99429 1.19120 0.93310 0.91290 0.85398 0.97934 1.21173 1.31735 1.11958 0.90363 0.92370 1.24873 0.95030 0.94953 0.98893 1.69874 1.36906 1.22773 1.23110 0.86607 0.79306 0.79405 0.82744 1.20852 1.21254 1.19871 1.60844 1.47160 1.16473 1.06908 1.21458 0.91208 0.99008 0.91103 0.90769 1.22435 0.99459 0.99673 1.01905 1.21810 0.97044 0.97974 0.98121 1.22059 0.96533 1.00566 0.79673 1.50817 1.06287 1.51708 1.06987 1.26074 0.86017 0.96417 0.95926 1.70510 1.29678 1.25622 1.02679 1.25917 0.85489 0.99243 1.00987 1.77981 1.23139 1.25547 0.88458 0.92335 0.96755 0.94321 0.89549 0.97268 0.92934 0.85003 0.93278 0.91950 0.93003 0.91812 0.91382 0.89838 0.86168 0.76622 0.77172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 9.53 37.16 0.35 -2.04 16 2 C -0.10 -2.28 5.57 -26.73 -0.15 -2.43 16 3 C 0.22 4.84 2.10 -68.87 -0.14 4.70 16 4 H 0.00 0.08 7.03 -51.93 -0.37 -0.29 16 5 C -0.51 -12.81 7.22 -34.44 -0.25 -13.06 16 6 H 0.06 1.45 7.60 -52.48 -0.40 1.05 16 7 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 8 N -0.89 -24.02 11.32 55.43 0.63 -23.39 16 9 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.68 -12.25 4.85 -100.96 -0.49 -12.74 16 14 C 0.08 1.29 2.40 -67.72 -0.16 1.13 16 15 H 0.07 1.23 7.21 -51.93 -0.37 0.86 16 16 C -0.18 -2.62 9.14 37.15 0.34 -2.28 16 17 C -0.11 -1.48 5.10 -26.73 -0.14 -1.62 16 18 C 0.13 1.70 6.44 -4.05 -0.03 1.68 16 19 N -0.37 -4.89 3.69 -62.63 -0.23 -5.12 16 20 C 0.25 3.07 12.63 -90.65 -1.14 1.92 16 21 N -0.56 -7.53 11.19 -15.83 -0.18 -7.71 16 22 C 0.19 2.36 13.03 -91.82 -1.20 1.17 16 23 N -0.32 -4.61 12.57 29.29 0.37 -4.24 16 24 H 0.06 1.30 7.04 -51.92 -0.37 0.93 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.04 0.69 6.78 -51.93 -0.35 0.34 16 27 H 0.09 2.19 6.09 -51.93 -0.32 1.87 16 28 H 0.01 0.18 7.51 -51.93 -0.39 -0.21 16 29 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.33 6.06 7.95 -39.29 -0.31 5.75 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.05 7.36 -51.93 -0.38 0.67 16 33 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.12 1.54 6.72 -51.92 -0.35 1.19 16 38 H 0.22 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.21 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 317.51 15.07 4.78 4.78 Total: -1.00 -28.04 317.51 -8.87 -36.91 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.12 Total: 5.45 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -2.61 Total: -9.24 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.10 Total: -53.20 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.04 -8.87 -36.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124257148.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.347 kcal (2) G-P(sol) polarization free energy of solvation -28.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds